Composite table

unclassifiedarchaea


[Important Notice]
This table can browse both anticodon number and codon usage concurrently.
When you consider the correlation of codon usage with anticodon number (i.e., number of tRNA genes having the respective anticodon), you have to pay attention to "wobble pairing" between the codon third position and the anticodon first position. For example, G base at the anticodon first position can pair with either U or C at the codon third position, and thus one anticodon can recognize two codons. U at the anticodon first position can pair with either A or G at the codon third position, and thus the anticodon also can recognize two codons. Furthermore, there exist the cases where the anticodon first position is enzymatically modified resulting in change of the codon recognition pattern.
Number of tRNA genes / Codon usage (permillage)
T C A G
AA anti
codon
tRNA codon usage AA anti
codon
tRNA codon usage AA anti
codon
tRNA codon usage AA anti
codon
tRNA codon usage
T phe AAA 0 TTT 19.64 Ser AGA 0 TCT 12.28 Tyr ATA 0 TAT 16.44 Cys ACA 0 TGT 3.96 T
GAA 6 TTC 24.07 GGA 1 TCC 10.64 GTA 2 TAC 15.39 GCA 6 TGC 5.84 C
Leu TAA 6 TTA 13.28 TGA 5 TCA 13.84 ochre TTA 0 TAA 1.39 opal Sec TCA 0 TGA 1.21 A
CAA 7 TTG 14.58 CGA 3 TCG 9.31 amber CTA 0 TAG 1.28 Trp CCA 2 TGG 10.92 G
C Leu AAG 5 CTT 18.70 Pro AGG 1 CCT 11.12 His ATG 0 CAT 9.37 Arg ACG 1 CGT 4.42 T
GAG 2 CTC 22.75 GGG 3 CCC 9.44 GTG 6 CAC 8.65 GCG 4 CGC 6.74 C
TAG 7 CTA 11.60 TGG 3 CCA 12.10 Gln TTG 13 CAA 14.17 TCG 6 CGA 7.58 A
CAG 4 CTG 17.89 CGG 5 CCG 10.09 CTG 4 CAG 16.95 CCG 1 CGG 6.64 G
A Ile AAT 0 ATT 25.13 Thr AGT 0 ACT 13.25 Asn ATT 0 AAT 20.82 Ser ACT 0 AGT 8.50 T
GAT 8 ATC 25.75 GGT 4 ACC 14.11 GTT 6 AAC 19.66 GCT 5 AGC 14.66 C
TAT 0 ATA 20.06 TGT 6 ACA 17.44 Lys TTT 4 AAA 37.24 Arg TCT 5 AGA 16.53 A
Met CAT 6 ATG 21.44 CGT 6 ACG 10.91 CTT 3 AAG 30.65 CCT 6 AGG 11.70 G
G Val AAC 0 GTT 20.48 Ala AGC 0 GCT 16.88 Asp ATC 0 GAT 25.35 Gly ACC 0 GGT 12.45 T
GAC 3 GTC 22.02 GGC 5 GCC 17.57 GTC 3 GAC 23.75 GCC 2 GGC 20.10 C
TAC 6 GTA 12.81 TGC 4 GCA 22.31 Glu TTC 6 GAA 36.89 TCC 6 GGA 26.99 A
CAC 6 GTG 15.08 CGC 3 GCG 16.18 CTC 2 GAG 28.16 CCC 3 GGG 12.87 G



BACK