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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA gene List
[FTHY] metagenome; soil
HIT:
101 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV180023535
FTHY01020800
[FTHY] metagenome; soil
1
75
+
His
GTG
[ENA]
¢þ
>WENV180023484
FTHY01001136
[FTHY] metagenome; soil
2
76
+
fMet
CAT
[ENA]
¢þ
>WENV180023526
FTHY01010874
[FTHY] metagenome; soil
2
91
+
Ser
CGA
[ENA]
¢þ
>WENV180023490
FTHY01001406
[FTHY] metagenome; soil
7
93
+
Tyr
GTA
[ENA]
¢þ
>WENV180023549
FTHY01105213
[FTHY] metagenome; soil
11
99
+
Ser
TGA
[ENA]
¢þ
>WENV180023552
FTHY01121608
[FTHY] metagenome; soil
11
101
+
Ser
GCT
[ENA]
¢þ
>WENV180023453
FTHY01000046
[FTHY] metagenome; soil
15
87
+
Val
GAC
[ENA]
¢þ
>WENV180023545
FTHY01089442
[FTHY] metagenome; soil
18
90
+
Gln
CTG
[ENA]
¢þ
>WENV180023546
FTHY01093427
[FTHY] metagenome; soil
18
102
+
Tyr
GTA
[ENA]
¢þ
>WENV180023497
FTHY01001720
[FTHY] metagenome; soil
26
102
+
Arg
ACG
[ENA]
¢þ
>WENV180023533
FTHY01016377
[FTHY] metagenome; soil
27
112
+
Ser
TGA
[ENA]
¢þ
>WENV180023539
FTHY01046772
[FTHY] metagenome; soil
41
127
+
Tyr
GTA
[ENA]
¢þ
>WENV180023541
FTHY01053190
[FTHY] metagenome; soil
45
118
+
Gly
CCC
[ENA]
¢þ
>WENV180023540
FTHY01051825
[FTHY] metagenome; soil
50
124
+
Thr
TGT
[ENA]
¢þ
>WENV180023532
FTHY01016094
[FTHY] metagenome; soil
55
128
+
Arg
CCT
[ENA]
¢þ
>WENV180023531
FTHY01014744
[FTHY] metagenome; soil
69
143
+
fMet
CAT
[ENA]
¢þ
>WENV180023519
FTHY01007057
[FTHY] metagenome; soil
76
2
-
His
GTG
[ENA]
¢þ
>WENV180023551
FTHY01107788
[FTHY] metagenome; soil
79
6
-
Glu
TTC
[ENA]
¢þ
>WENV180023537
FTHY01028371
[FTHY] metagenome; soil
87
163
+
His
GTG
[ENA]
¢þ
>WENV180023550
FTHY01105579
[FTHY] metagenome; soil
89
6
-
Leu
CAG
[ENA]
¢þ
>WENV180023543
FTHY01084701
[FTHY] metagenome; soil
98
2
-
SeC
TCA
[ENA]
¢þ
>WENV180023544
FTHY01089192
[FTHY] metagenome; soil
102
27
-
Cys
GCA
[ENA]
¢þ
>WENV180023536
FTHY01022004
[FTHY] metagenome; soil
103
29
-
Lys
TTT
[ENA]
¢þ
>WENV180023530
FTHY01011609
[FTHY] metagenome; soil
108
184
+
Met
CAT
[ENA]
¢þ
>WENV180023548
FTHY01097266
[FTHY] metagenome; soil
111
41
-
Gln
TTG
[ENA]
¢þ
>WENV180023507
FTHY01003502
[FTHY] metagenome; soil
112
38
-
Thr
CGT
[ENA]
¢þ
>WENV180023511
FTHY01004662
[FTHY] metagenome; soil
112
184
+
Met
CAT
[ENA]
¢þ
>WENV180023514
FTHY01005763
[FTHY] metagenome; soil
114
185
+
Ile
GAT
[ENA]
¢þ
>WENV180023538
FTHY01034856
[FTHY] metagenome; soil
121
218
+
SeC
TCA
[ENA]
¢þ
>WENV180023510
FTHY01004319
[FTHY] metagenome; soil
124
195
+
Gln
TTG
[ENA]
¢þ
>WENV180023520
FTHY01008024
[FTHY] metagenome; soil
126
55
-
Glu
TTC
[ENA]
¢þ
>WENV180023454
FTHY01000046
[FTHY] metagenome; soil
127
199
+
Val
GAC
[ENA]
¢þ
>WENV180023483
FTHY01001049
[FTHY] metagenome; soil
142
69
-
Glu
CTC
[ENA]
¢þ
>WENV180023522
FTHY01009173
[FTHY] metagenome; soil
151
77
-
Gln
TTG
[ENA]
¢þ
>WENV180023508
FTHY01003877
[FTHY] metagenome; soil
174
244
+
Gly
TCC
[ENA]
¢þ
>WENV180023467
FTHY01000485
[FTHY] metagenome; soil
182
255
+
Ala
GGC
[ENA]
¢þ
>WENV180023513
FTHY01004864
[FTHY] metagenome; soil
227
155
-
Ile2
CAT
[ENA]
¢þ
>WENV180023482
FTHY01001049
[FTHY] metagenome; soil
256
183
-
Glu
CTC
[ENA]
¢þ
>WENV180023455
FTHY01000073
[FTHY] metagenome; soil
264
191
-
Arg
TCT
[ENA]
¢þ
>WENV180023506
FTHY01002478
[FTHY] metagenome; soil
276
204
-
Val
TAC
[ENA]
¢þ
>WENV180023473
FTHY01000690
[FTHY] metagenome; soil
295
220
-
Gly
GCC
[ENA]
¢þ
>WENV180023521
FTHY01008537
[FTHY] metagenome; soil
302
389
+
Leu
GAG
[ENA]
¢þ
>WENV180023529
FTHY01011135
[FTHY] metagenome; soil
304
218
-
Ser
TGA
[ENA]
¢þ
>WENV180023547
FTHY01096454
[FTHY] metagenome; soil
319
389
+
Arg
ACG
[ENA]
¢þ
>WENV180023491
FTHY01001406
[FTHY] metagenome; soil
320
392
+
Asn
GTT
[ENA]
¢þ
>WENV180023481
FTHY01001049
[FTHY] metagenome; soil
356
284
-
Gln
CTG
[ENA]
¢þ
>WENV180023528
FTHY01011135
[FTHY] metagenome; soil
377
306
-
Ile
GAT
[ENA]
¢þ
>WENV180023492
FTHY01001500
[FTHY] metagenome; soil
387
313
-
Gln
TTG
[ENA]
¢þ
>WENV180023504
FTHY01002380
[FTHY] metagenome; soil
398
324
-
Phe
GAA
[ENA]
¢þ
>WENV180023472
FTHY01000690
[FTHY] metagenome; soil
415
342
-
Gly
GCC
[ENA]
¢þ
>WENV180023471
FTHY01000557
[FTHY] metagenome; soil
416
342
-
Lys
CTT
[ENA]
¢þ
>WENV180023509
FTHY01003877
[FTHY] metagenome; soil
431
503
+
Asp
GTC
[ENA]
¢þ
>WENV180023527
FTHY01011135
[FTHY] metagenome; soil
450
378
-
Val
TAC
[ENA]
¢þ
>WENV180023503
FTHY01002380
[FTHY] metagenome; soil
499
425
-
Asp
GTC
[ENA]
¢þ
>WENV180023512
FTHY01004864
[FTHY] metagenome; soil
503
432
-
Glu
TTC
[ENA]
¢þ
>WENV180023499
FTHY01002135
[FTHY] metagenome; soil
535
609
+
fMet
CAT
[ENA]
¢þ
>WENV180023478
FTHY01000952
[FTHY] metagenome; soil
559
485
-
Ile2
CAT
[ENA]
¢þ
>WENV180023518
FTHY01007057
[FTHY] metagenome; soil
570
498
-
Phe
GAA
[ENA]
¢þ
>WENV180023502
FTHY01002380
[FTHY] metagenome; soil
629
556
-
Glu
TTC
[ENA]
¢þ
>WENV180023517
FTHY01007057
[FTHY] metagenome; soil
649
577
-
Ala
TGC
[ENA]
¢þ
>WENV180023494
FTHY01001711
[FTHY] metagenome; soil
797
889
+
Ser
GCT
[ENA]
¢þ
>WENV180023498
FTHY01001845
[FTHY] metagenome; soil
819
893
+
fMet
CAT
[ENA]
¢þ
>WENV180023462
FTHY01000328
[FTHY] metagenome; soil
942
1025
+
Tyr
GTA
[ENA]
¢þ
>WENV180023523
FTHY01009232
[FTHY] metagenome; soil
962
1033
+
Gly
CCC
[ENA]
¢þ
>WENV180023516
FTHY01006676
[FTHY] metagenome; soil
962
1050
+
Ser
TGA
[ENA]
¢þ
>WENV180023495
FTHY01001711
[FTHY] metagenome; soil
1040
1114
+
Arg
ACG
[ENA]
¢þ
>WENV180023515
FTHY01006354
[FTHY] metagenome; soil
1047
974
-
Trp
CCA
[ENA]
¢þ
>WENV180023542
FTHY01066783
[FTHY] metagenome; soil
1053
1129
+
Leu
TAG
[ENA]
¢þ
>WENV180023468
FTHY01000544
[FTHY] metagenome; soil
1224
1151
-
Arg
CCT
[ENA]
¢þ
>WENV180023496
FTHY01001711
[FTHY] metagenome; soil
1247
1322
+
Arg
ACG
[ENA]
¢þ
>WENV180023501
FTHY01002308
[FTHY] metagenome; soil
1290
1365
+
Asp
GTC
[ENA]
¢þ
>WENV180023505
FTHY01002384
[FTHY] metagenome; soil
1307
1229
-
Ala
CGC
[ENA]
¢þ
>WENV180023479
FTHY01000965
[FTHY] metagenome; soil
1328
1400
+
Arg
CCG
[ENA]
¢þ
>WENV180023474
FTHY01000797
[FTHY] metagenome; soil
1403
1478
+
Thr
GGT
[ENA]
¢þ
>WENV180023534
FTHY01017965
[FTHY] metagenome; soil
1420
1346
-
His
GTG
[ENA]
¢þ
>WENV180023500
FTHY01002149
[FTHY] metagenome; soil
1446
1372
-
Leu
CAA
[ENA]
¢þ
>WENV180023487
FTHY01001215
[FTHY] metagenome; soil
1505
1428
-
Trp
CCA
[ENA]
¢þ
>WENV180023460
FTHY01000255
[FTHY] metagenome; soil
1524
1451
-
Ala
TGC
[ENA]
¢þ
>WENV180023456
FTHY01000182
[FTHY] metagenome; soil
1702
1777
+
Pro
CGG
[ENA]
¢þ
>WENV180023493
FTHY01001513
[FTHY] metagenome; soil
1883
1810
-
Lys
TTT
[ENA]
¢þ
>WENV180023452
FTHY01000029
[FTHY] metagenome; soil
2149
2223
+
fMet
CAT
[ENA]
¢þ
>WENV180023465
FTHY01000422
[FTHY] metagenome; soil
2214
2288
+
Lys
CTT
[ENA]
¢þ
>WENV180023488
FTHY01001376
[FTHY] metagenome; soil
2278
2351
+
Ala
GGC
[ENA]
¢þ
>WENV180023463
FTHY01000332
[FTHY] metagenome; soil
2292
2365
+
Val
CAC
[ENA]
¢þ
>WENV180023489
FTHY01001376
[FTHY] metagenome; soil
2388
2461
+
Ala
GGC
[ENA]
¢þ
>WENV180023470
FTHY01000557
[FTHY] metagenome; soil
2411
2337
-
Lys
CTT
[ENA]
¢þ
>WENV180023464
FTHY01000332
[FTHY] metagenome; soil
2576
2649
+
Val
CAC
[ENA]
¢þ
>WENV180023486
FTHY01001181
[FTHY] metagenome; soil
2713
2639
-
Pro
TGG
[ENA]
¢þ
>WENV180023459
FTHY01000255
[FTHY] metagenome; soil
2719
2644
-
Ile
GAT
[ENA]
¢þ
>WENV180023477
FTHY01000952
[FTHY] metagenome; soil
2845
2772
-
Asn
GTT
[ENA]
¢þ
>WENV180023485
FTHY01001181
[FTHY] metagenome; soil
2876
2947
+
Gly
TCC
[ENA]
¢þ
>WENV180023476
FTHY01000952
[FTHY] metagenome; soil
2978
2905
-
Asn
GTT
[ENA]
¢þ
>WENV180023457
FTHY01000200
[FTHY] metagenome; soil
2981
2906
-
Arg
ACG
[ENA]
¢þ
>WENV180023525
FTHY01009543
[FTHY] metagenome; soil
2998
2922
-
Met
CAT
[ENA]
¢þ
>WENV180023524
FTHY01009543
[FTHY] metagenome; soil
3112
3039
-
Thr
GGT
[ENA]
¢þ
>WENV180023475
FTHY01000823
[FTHY] metagenome; soil
3604
3515
-
Ser
CGA
[ENA]
¢þ
>WENV180023469
FTHY01000553
[FTHY] metagenome; soil
5250
5165
-
Leu
GAG
[ENA]
¢þ
>WENV180023458
FTHY01000225
[FTHY] metagenome; soil
6483
6409
-
fMet
CAT
[ENA]
¢þ
>WENV180023480
FTHY01001028
[FTHY] metagenome; soil
7184
7258
+
Cys
GCA
[ENA]
¢þ
>WENV180023466
FTHY01000434
[FTHY] metagenome; soil
7423
7349
-
Thr
TGT
[ENA]
¢þ
>WENV180023461
FTHY01000273
[FTHY] metagenome; soil
9308
9224
-
Leu
CAG
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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