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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA gene List
[FTIW] metagenome; soil
HIT:
66 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV180027104
FTIW01016128
[FTIW] metagenome; soil
1
76
+
Thr
TGT
[ENA]
¢þ
>WENV180027138
FTIW01270639
[FTIW] metagenome; soil
1
77
+
Met
CAT
[ENA]
¢þ
>WENV180027126
FTIW01165256
[FTIW] metagenome; soil
2
77
+
Glu
TTC
[ENA]
¢þ
>WENV180027096
FTIW01000446
[FTIW] metagenome; soil
5
81
+
fMet
CAT
[ENA]
¢þ
>WENV180027115
FTIW01070353
[FTIW] metagenome; soil
7
92
+
Tyr
GTA
[ENA]
¢þ
>WENV180027145
FTIW01348978
[FTIW] metagenome; soil
12
87
+
His
GTG
[ENA]
¢þ
>WENV180027154
FTIW01488834
[FTIW] metagenome; soil
19
92
+
Gln
TTG
[ENA]
¢þ
>WENV180027139
FTIW01283749
[FTIW] metagenome; soil
19
94
+
Cys
GCA
[ENA]
¢þ
>WENV180027132
FTIW01216473
[FTIW] metagenome; soil
37
112
+
Ile
TAT
[ENA]
¢þ
>WENV180027107
FTIW01035228
[FTIW] metagenome; soil
46
129
+
Leu
TAG
[ENA]
¢þ
>WENV180027148
FTIW01371970
[FTIW] metagenome; soil
48
132
+
Leu
TAG
[ENA]
¢þ
>WENV180027143
FTIW01344041
[FTIW] metagenome; soil
49
123
+
Leu
TAA
[ENA]
¢þ
>WENV180027092
FTIW01000071
[FTIW] metagenome; soil
63
136
+
Gly
GCC
[ENA]
¢þ
>WENV180027131
FTIW01184447
[FTIW] metagenome; soil
70
141
+
Gln
TTG
[ENA]
¢þ
>WENV180027102
FTIW01012104
[FTIW] metagenome; soil
72
1
-
Glu
TTC
[ENA]
¢þ
>WENV180027124
FTIW01134789
[FTIW] metagenome; soil
74
1
-
Glu
CTC
[ENA]
¢þ
>WENV180027137
FTIW01265252
[FTIW] metagenome; soil
74
150
+
Ile2
CAT
[ENA]
¢þ
>WENV180027099
FTIW01007274
[FTIW] metagenome; soil
74
163
+
Ser
GGA
[ENA]
¢þ
>WENV180027108
FTIW01036510
[FTIW] metagenome; soil
76
2
-
Leu
TAA
[ENA]
¢þ
>WENV180027130
FTIW01181659
[FTIW] metagenome; soil
79
155
+
Arg
ACG
[ENA]
¢þ
>WENV180027135
FTIW01229279
[FTIW] metagenome; soil
84
160
+
Met
CAT
[ENA]
¢þ
>WENV180027110
FTIW01042182
[FTIW] metagenome; soil
86
14
-
Arg
GCG
[ENA]
¢þ
>WENV180027140
FTIW01286249
[FTIW] metagenome; soil
87
14
-
Arg
CCT
[ENA]
¢þ
>WENV180027155
FTIW01494020
[FTIW] metagenome; soil
89
161
+
Gln
TTG
[ENA]
¢þ
>WENV180027125
FTIW01142299
[FTIW] metagenome; soil
97
23
-
Val
CAC
[ENA]
¢þ
>WENV180027100
FTIW01008885
[FTIW] metagenome; soil
99
9
-
Ser
GGA
[ENA]
¢þ
>WENV180027119
FTIW01090581
[FTIW] metagenome; soil
114
40
-
Pro
CGG
[ENA]
¢þ
>WENV180027098
FTIW01002752
[FTIW] metagenome; soil
121
48
-
Phe
GAA
[ENA]
¢þ
>WENV180027122
FTIW01132335
[FTIW] metagenome; soil
125
37
-
Ser
GCT
[ENA]
¢þ
>WENV180027106
FTIW01034831
[FTIW] metagenome; soil
125
195
+
Asn
GTT
[ENA]
¢þ
>WENV180027109
FTIW01039730
[FTIW] metagenome; soil
126
55
-
Gln
TTG
[ENA]
¢þ
>WENV180027150
FTIW01379267
[FTIW] metagenome; soil
130
55
-
Ala
TGC
[ENA]
¢þ
>WENV180027134
FTIW01229111
[FTIW] metagenome; soil
131
61
-
Gly
GCC
[ENA]
¢þ
>WENV180027105
FTIW01023872
[FTIW] metagenome; soil
136
62
-
Ala
TGC
[ENA]
¢þ
>WENV180027118
FTIW01089178
[FTIW] metagenome; soil
137
219
+
Leu
GAG
[ENA]
¢þ
>WENV180027136
FTIW01229734
[FTIW] metagenome; soil
144
227
+
Leu
TAG
[ENA]
¢þ
>WENV180027156
FTIW01520547
[FTIW] metagenome; soil
151
222
+
Glu
CTC
[ENA]
¢þ
>WENV180027112
FTIW01048685
[FTIW] metagenome; soil
164
93
-
Gln
TTG
[ENA]
¢þ
>WENV180027129
FTIW01181413
[FTIW] metagenome; soil
188
116
-
Gly
GCC
[ENA]
¢þ
>WENV180027127
FTIW01165256
[FTIW] metagenome; soil
195
270
+
Ala
GGC
[ENA]
¢þ
>WENV180027153
FTIW01477218
[FTIW] metagenome; soil
200
125
-
Arg
CCT
[ENA]
¢þ
>WENV180027091
FTIW01000051
[FTIW] metagenome; soil
201
290
+
Ser
CGA
[ENA]
¢þ
>WENV180027151
FTIW01410013
[FTIW] metagenome; soil
214
290
+
fMet
CAT
[ENA]
¢þ
>WENV180027146
FTIW01353039
[FTIW] metagenome; soil
227
156
-
Glu
TTC
[ENA]
¢þ
>WENV180027128
FTIW01166767
[FTIW] metagenome; soil
228
305
+
Arg
ACG
[ENA]
¢þ
>WENV180027149
FTIW01379267
[FTIW] metagenome; soil
229
153
-
Ile
GAT
[ENA]
¢þ
>WENV180027103
FTIW01013545
[FTIW] metagenome; soil
231
304
+
Arg
CCT
[ENA]
¢þ
>WENV180027111
FTIW01048657
[FTIW] metagenome; soil
239
164
-
Arg
CCT
[ENA]
¢þ
>WENV180027121
FTIW01130163
[FTIW] metagenome; soil
294
367
+
Gln
TTG
[ENA]
¢þ
>WENV180027141
FTIW01338573
[FTIW] metagenome; soil
319
390
+
Glu
TTC
[ENA]
¢þ
>WENV180027120
FTIW01127454
[FTIW] metagenome; soil
330
401
+
Val
CAC
[ENA]
¢þ
>WENV180027142
FTIW01343930
[FTIW] metagenome; soil
341
267
-
Arg
CCT
[ENA]
¢þ
>WENV180027133
FTIW01220954
[FTIW] metagenome; soil
400
316
-
His
GTG
[ENA]
¢þ
>WENV180027147
FTIW01365661
[FTIW] metagenome; soil
437
362
-
His
GTG
[ENA]
¢þ
>WENV180027095
FTIW01000436
[FTIW] metagenome; soil
485
401
-
Leu
GAG
[ENA]
¢þ
>WENV180027114
FTIW01068425
[FTIW] metagenome; soil
600
509
-
Ser
TGA
[ENA]
¢þ
>WENV180027101
FTIW01009374
[FTIW] metagenome; soil
786
861
+
His
GTG
[ENA]
¢þ
>WENV180027117
FTIW01086320
[FTIW] metagenome; soil
807
902
+
SeC
TCA
[ENA]
¢þ
>WENV180027097
FTIW01000804
[FTIW] metagenome; soil
1017
941
-
Arg
CCG
[ENA]
¢þ
>WENV180027116
FTIW01074188
[FTIW] metagenome; soil
1059
1132
+
Pro
CGG
[ENA]
¢þ
>WENV180027123
FTIW01133541
[FTIW] metagenome; soil
1063
988
-
Glu
TTC
[ENA]
¢þ
>WENV180027113
FTIW01058810
[FTIW] metagenome; soil
1159
1232
+
Lys
CTT
[ENA]
¢þ
>WENV180027152
FTIW01441020
[FTIW] metagenome; soil
1458
1386
-
Met
CAT
[ENA]
¢þ
>WENV180027144
FTIW01348242
[FTIW] metagenome; soil
1654
1582
-
Gly
CCC
[ENA]
¢þ
>WENV180027094
FTIW01000225
[FTIW] metagenome; soil
2080
2006
-
Ala
TGC
[ENA]
¢þ
>WENV180027093
FTIW01000225
[FTIW] metagenome; soil
2234
2160
-
Ile
GAT
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
BACK