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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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BLAST
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HOW TO USE
tRNA gene List
[FTKJ] metagenome; soil
HIT:
16 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV180033441
FTKJ01019285
[FTKJ] metagenome; soil
20
92
+
Thr
GGT
[ENA]
¢þ
>WENV180033443
FTKJ01028886
[FTKJ] metagenome; soil
34
117
+
Leu
TAA
[ENA]
¢þ
>WENV180033444
FTKJ01029728
[FTKJ] metagenome; soil
72
-1
-
Ile
TAT
[ENA]
¢þ
>WENV180033448
FTKJ01076679
[FTKJ] metagenome; soil
73
1
-
Gly
CCC
[ENA]
¢þ
>WENV180033438
FTKJ01002845
[FTKJ] metagenome; soil
74
1
-
His
GTG
[ENA]
¢þ
>WENV180033440
FTKJ01014860
[FTKJ] metagenome; soil
87
162
+
Lys
CTT
[ENA]
¢þ
>WENV180033446
FTKJ01051001
[FTKJ] metagenome; soil
90
15
-
Lys
TTT
[ENA]
¢þ
>WENV180033449
FTKJ01076855
[FTKJ] metagenome; soil
92
16
-
Pro
TGG
[ENA]
¢þ
>WENV180033447
FTKJ01063193
[FTKJ] metagenome; soil
94
9
-
Leu
CAA
[ENA]
¢þ
>WENV180033439
FTKJ01007245
[FTKJ] metagenome; soil
98
23
-
Met
CAT
[ENA]
¢þ
>WENV180033445
FTKJ01049157
[FTKJ] metagenome; soil
99
28
-
Cys
GCA
[ENA]
¢þ
>WENV180033442
FTKJ01028118
[FTKJ] metagenome; soil
100
23
-
Pro
GGG
[ENA]
¢þ
>WENV180033436
FTKJ01002329
[FTKJ] metagenome; soil
100
171
+
Cys
GCA
[ENA]
¢þ
>WENV180033434
FTKJ01000209
[FTKJ] metagenome; soil
137
213
+
fMet
CAT
[ENA]
¢þ
>WENV180033435
FTKJ01001192
[FTKJ] metagenome; soil
146
74
-
Val
TAC
[ENA]
¢þ
>WENV180033437
FTKJ01002845
[FTKJ] metagenome; soil
174
98
-
Arg
TCT
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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