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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA gene List
[OAOM] sediment metagenome; sediment
HIT:
63 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV180100307
OAOM01005273
[OAOM] sediment metagenome; sediment
14
87
+
Lys
TTT
[ENA]
¢þ
>WENV180100292
OAOM01000997
[OAOM] sediment metagenome; sediment
47
122
+
Thr
CGT
[ENA]
¢þ
>WENV180100320
OAOM01009331
[OAOM] sediment metagenome; sediment
57
128
+
Gln
TTG
[ENA]
¢þ
>WENV180100334
OAOM01013837
[OAOM] sediment metagenome; sediment
76
1
-
Phe
GAA
[ENA]
¢þ
>WENV180100319
OAOM01009152
[OAOM] sediment metagenome; sediment
81
155
+
Thr
CGT
[ENA]
¢þ
>WENV180100306
OAOM01005093
[OAOM] sediment metagenome; sediment
93
166
+
Lys
CTT
[ENA]
¢þ
>WENV180100321
OAOM01009407
[OAOM] sediment metagenome; sediment
104
177
+
Gly
CCC
[ENA]
¢þ
>WENV180100328
OAOM01010547
[OAOM] sediment metagenome; sediment
113
38
-
Ala
TGC
[ENA]
¢þ
>WENV180100324
OAOM01010288
[OAOM] sediment metagenome; sediment
116
189
+
Thr
GGT
[ENA]
¢þ
>WENV180100310
OAOM01006638
[OAOM] sediment metagenome; sediment
126
53
-
Arg
TCT
[ENA]
¢þ
>WENV180100315
OAOM01007927
[OAOM] sediment metagenome; sediment
131
60
-
Arg
TCT
[ENA]
¢þ
>WENV180100333
OAOM01013113
[OAOM] sediment metagenome; sediment
135
58
-
Pro
TGG
[ENA]
¢þ
>WENV180100329
OAOM01010636
[OAOM] sediment metagenome; sediment
137
213
+
fMet
CAT
[ENA]
¢þ
>WENV180100314
OAOM01007887
[OAOM] sediment metagenome; sediment
173
246
+
His
GTG
[ENA]
¢þ
>WENV180100318
OAOM01008721
[OAOM] sediment metagenome; sediment
184
260
+
Arg
TCG
[ENA]
¢þ
>WENV180100330
OAOM01012039
[OAOM] sediment metagenome; sediment
189
113
-
Pro
GGG
[ENA]
¢þ
>WENV180100323
OAOM01010174
[OAOM] sediment metagenome; sediment
189
278
+
Ser
CGA
[ENA]
¢þ
>WENV180100332
OAOM01012893
[OAOM] sediment metagenome; sediment
190
114
-
Arg
ACG
[ENA]
¢þ
>WENV180100309
OAOM01006001
[OAOM] sediment metagenome; sediment
202
277
+
Arg
CCT
[ENA]
¢þ
>WENV180100331
OAOM01012636
[OAOM] sediment metagenome; sediment
214
138
-
fMet
CAT
[ENA]
¢þ
>WENV180100327
OAOM01010547
[OAOM] sediment metagenome; sediment
226
150
-
Ile
GAT
[ENA]
¢þ
>WENV180100325
OAOM01010288
[OAOM] sediment metagenome; sediment
234
307
+
Met
CAT
[ENA]
¢þ
>WENV180100322
OAOM01010081
[OAOM] sediment metagenome; sediment
245
173
-
Val
CAC
[ENA]
¢þ
>WENV180100294
OAOM01001404
[OAOM] sediment metagenome; sediment
248
174
-
Glu
CTC
[ENA]
¢þ
>WENV180100316
OAOM01008414
[OAOM] sediment metagenome; sediment
256
342
+
Ser
GGA
[ENA]
¢þ
>WENV180100311
OAOM01007329
[OAOM] sediment metagenome; sediment
259
347
+
Leu
TAA
[ENA]
¢þ
>WENV180100326
OAOM01010426
[OAOM] sediment metagenome; sediment
267
185
-
Leu
TAG
[ENA]
¢þ
>WENV180100313
OAOM01007777
[OAOM] sediment metagenome; sediment
285
195
-
Ser
GGA
[ENA]
¢þ
>WENV180100280
OAOM01000246
[OAOM] sediment metagenome; sediment
315
240
-
Glu
TTC
[ENA]
¢þ
>WENV180100312
OAOM01007482
[OAOM] sediment metagenome; sediment
329
415
+
Leu
GAG
[ENA]
¢þ
>WENV180100304
OAOM01004648
[OAOM] sediment metagenome; sediment
336
408
+
Lys
TTT
[ENA]
¢þ
>WENV180100317
OAOM01008591
[OAOM] sediment metagenome; sediment
357
280
-
Pro
CGG
[ENA]
¢þ
>WENV180100303
OAOM01004632
[OAOM] sediment metagenome; sediment
411
486
+
Thr
TGT
[ENA]
¢þ
>WENV180100298
OAOM01002048
[OAOM] sediment metagenome; sediment
433
507
+
Asn
GTT
[ENA]
¢þ
>WENV180100279
OAOM01000246
[OAOM] sediment metagenome; sediment
445
370
-
Ala
GGC
[ENA]
¢þ
>WENV180100308
OAOM01005582
[OAOM] sediment metagenome; sediment
454
368
-
Ser
TGA
[ENA]
¢þ
>WENV180100299
OAOM01002231
[OAOM] sediment metagenome; sediment
466
392
-
Val
GAC
[ENA]
¢þ
>WENV180100305
OAOM01005081
[OAOM] sediment metagenome; sediment
472
387
-
Leu
CAA
[ENA]
¢þ
>WENV180100300
OAOM01002328
[OAOM] sediment metagenome; sediment
485
559
+
Trp
CCA
[ENA]
¢þ
>WENV180100301
OAOM01002728
[OAOM] sediment metagenome; sediment
500
585
+
Tyr
GTA
[ENA]
¢þ
>WENV180100272
OAOM01000001
[OAOM] sediment metagenome; sediment
525
597
+
fMet
CAT
[ENA]
¢þ
>WENV180100302
OAOM01002728
[OAOM] sediment metagenome; sediment
610
683
+
Gly
TCC
[ENA]
¢þ
>WENV180100278
OAOM01000220
[OAOM] sediment metagenome; sediment
690
766
+
Pro
GGG
[ENA]
¢þ
>WENV180100296
OAOM01001624
[OAOM] sediment metagenome; sediment
788
714
-
Gln
CTG
[ENA]
¢þ
>WENV180100284
OAOM01000437
[OAOM] sediment metagenome; sediment
841
765
-
Arg
CCG
[ENA]
¢þ
>WENV180100291
OAOM01000946
[OAOM] sediment metagenome; sediment
853
778
-
Lys
CTT
[ENA]
¢þ
>WENV180100297
OAOM01002037
[OAOM] sediment metagenome; sediment
873
798
-
Ala
GGC
[ENA]
¢þ
>WENV180100295
OAOM01001624
[OAOM] sediment metagenome; sediment
920
844
-
Met
CAT
[ENA]
¢þ
>WENV180100293
OAOM01001252
[OAOM] sediment metagenome; sediment
983
1058
+
Ile2
CAT
[ENA]
¢þ
>WENV180100290
OAOM01000946
[OAOM] sediment metagenome; sediment
1009
933
-
His
GTG
[ENA]
¢þ
>WENV180100289
OAOM01000946
[OAOM] sediment metagenome; sediment
1260
1184
-
Arg
TCT
[ENA]
¢þ
>WENV180100287
OAOM01000588
[OAOM] sediment metagenome; sediment
1319
1411
+
Ser
GGA
[ENA]
¢þ
>WENV180100288
OAOM01000946
[OAOM] sediment metagenome; sediment
1376
1300
-
Pro
TGG
[ENA]
¢þ
>WENV180100286
OAOM01000461
[OAOM] sediment metagenome; sediment
1463
1379
-
Leu
GAG
[ENA]
¢þ
>WENV180100281
OAOM01000296
[OAOM] sediment metagenome; sediment
1511
1425
-
Leu
TAA
[ENA]
¢þ
>WENV180100285
OAOM01000460
[OAOM] sediment metagenome; sediment
1786
1862
+
Pro
CGG
[ENA]
¢þ
>WENV180100283
OAOM01000372
[OAOM] sediment metagenome; sediment
1846
1930
+
Leu
CAG
[ENA]
¢þ
>WENV180100282
OAOM01000313
[OAOM] sediment metagenome; sediment
2042
2118
+
Asn
GTT
[ENA]
¢þ
>WENV180100277
OAOM01000079
[OAOM] sediment metagenome; sediment
2281
2357
+
Arg
CCT
[ENA]
¢þ
>WENV180100273
OAOM01000003
[OAOM] sediment metagenome; sediment
2700
2605
-
SeC
TCA
[ENA]
¢þ
>WENV180100276
OAOM01000077
[OAOM] sediment metagenome; sediment
2896
2804
-
Ser
GCT
[ENA]
¢þ
>WENV180100275
OAOM01000005
[OAOM] sediment metagenome; sediment
3867
3791
-
Ile
GAT
[ENA]
¢þ
>WENV180100274
OAOM01000005
[OAOM] sediment metagenome; sediment
3972
3897
-
Ala
TGC
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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