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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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|
HOW TO USE
tRNA gene List
[OBXG] human gut metagenome; faeces
HIT:
85 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV180449373
OBXG01000004
[OBXG] human gut metagenome; faeces
62
137
+
Thr
GGT
[ENA]
¢þ
>WENV180449424
OBXG01002903
[OBXG] human gut metagenome; faeces
77
1
-
Asp
GTC
[ENA]
¢þ
>WENV180449422
OBXG01001584
[OBXG] human gut metagenome; faeces
123
197
+
Asp
GTC
[ENA]
¢þ
>WENV180449406
OBXG01000023
[OBXG] human gut metagenome; faeces
149
74
-
His
GTG
[ENA]
¢þ
>WENV180449423
OBXG01002022
[OBXG] human gut metagenome; faeces
172
100
-
Thr
GGT
[ENA]
¢þ
>WENV180449420
OBXG01000571
[OBXG] human gut metagenome; faeces
245
170
-
Ala
TGC
[ENA]
¢þ
>WENV180449421
OBXG01000810
[OBXG] human gut metagenome; faeces
255
180
-
Glu
TTC
[ENA]
¢þ
>WENV180449405
OBXG01000023
[OBXG] human gut metagenome; faeces
284
208
-
Arg
CCG
[ENA]
¢þ
>WENV180449419
OBXG01000571
[OBXG] human gut metagenome; faeces
364
288
-
Ile
GAT
[ENA]
¢þ
>WENV180449418
OBXG01000081
[OBXG] human gut metagenome; faeces
368
442
+
Leu
TAA
[ENA]
¢þ
>WENV180449415
OBXG01000048
[OBXG] human gut metagenome; faeces
380
305
-
Thr
GGT
[ENA]
¢þ
>WENV180449414
OBXG01000048
[OBXG] human gut metagenome; faeces
461
387
-
Gly
TCC
[ENA]
¢þ
>WENV180449413
OBXG01000048
[OBXG] human gut metagenome; faeces
662
578
-
Tyr
GTA
[ENA]
¢þ
>WENV180449412
OBXG01000048
[OBXG] human gut metagenome; faeces
746
671
-
Thr
TGT
[ENA]
¢þ
>WENV180449416
OBXG01000050
[OBXG] human gut metagenome; faeces
1792
1866
+
Ile
GAT
[ENA]
¢þ
>WENV180449417
OBXG01000050
[OBXG] human gut metagenome; faeces
1883
1957
+
Ala
TGC
[ENA]
¢þ
>WENV180449411
OBXG01000034
[OBXG] human gut metagenome; faeces
6579
6503
-
Asp
GTC
[ENA]
¢þ
>WENV180449399
OBXG01000014
[OBXG] human gut metagenome; faeces
8954
8878
-
Pro
CGG
[ENA]
¢þ
>WENV180449410
OBXG01000034
[OBXG] human gut metagenome; faeces
14802
14726
-
Asp
GTC
[ENA]
¢þ
>WENV180449407
OBXG01000028
[OBXG] human gut metagenome; faeces
14915
14990
+
Ile2
CAT
[ENA]
¢þ
>WENV180449408
OBXG01000028
[OBXG] human gut metagenome; faeces
14998
15074
+
Arg
TCG
[ENA]
¢þ
>WENV180449409
OBXG01000028
[OBXG] human gut metagenome; faeces
15088
15164
+
Arg
TCT
[ENA]
¢þ
>WENV180449382
OBXG01000006
[OBXG] human gut metagenome; faeces
19274
19188
-
Leu
CAG
[ENA]
¢þ
>WENV180449381
OBXG01000006
[OBXG] human gut metagenome; faeces
19395
19309
-
Leu
CAG
[ENA]
¢þ
>WENV180449380
OBXG01000006
[OBXG] human gut metagenome; faeces
19510
19424
-
Leu
CAG
[ENA]
¢þ
>WENV180449404
OBXG01000023
[OBXG] human gut metagenome; faeces
34828
34753
-
Trp
CCA
[ENA]
¢þ
>WENV180449403
OBXG01000023
[OBXG] human gut metagenome; faeces
34913
34837
-
Asp
GTC
[ENA]
¢þ
>WENV180449356
OBXG01000002
[OBXG] human gut metagenome; faeces
41430
41506
+
Val
GAC
[ENA]
¢þ
>WENV180449357
OBXG01000002
[OBXG] human gut metagenome; faeces
41511
41587
+
Val
GAC
[ENA]
¢þ
>WENV180449393
OBXG01000010
[OBXG] human gut metagenome; faeces
43813
43729
-
Leu
CAA
[ENA]
¢þ
>WENV180449383
OBXG01000007
[OBXG] human gut metagenome; faeces
44178
44254
+
fMet
CAT
[ENA]
¢þ
>WENV180449384
OBXG01000007
[OBXG] human gut metagenome; faeces
44288
44364
+
fMet
CAT
[ENA]
¢þ
>WENV180449385
OBXG01000007
[OBXG] human gut metagenome; faeces
44398
44474
+
fMet
CAT
[ENA]
¢þ
>WENV180449402
OBXG01000019
[OBXG] human gut metagenome; faeces
78050
77974
-
Pro
TGG
[ENA]
¢þ
>WENV180449394
OBXG01000013
[OBXG] human gut metagenome; faeces
80041
80133
+
Ser
GCT
[ENA]
¢þ
>WENV180449395
OBXG01000013
[OBXG] human gut metagenome; faeces
80137
80213
+
Arg
ACG
[ENA]
¢þ
>WENV180449396
OBXG01000013
[OBXG] human gut metagenome; faeces
80277
80353
+
Arg
ACG
[ENA]
¢þ
>WENV180449397
OBXG01000013
[OBXG] human gut metagenome; faeces
80417
80493
+
Arg
ACG
[ENA]
¢þ
>WENV180449401
OBXG01000016
[OBXG] human gut metagenome; faeces
95786
95702
-
Tyr
GTA
[ENA]
¢þ
>WENV180449400
OBXG01000016
[OBXG] human gut metagenome; faeces
95904
95820
-
Tyr
GTA
[ENA]
¢þ
>WENV180449374
OBXG01000004
[OBXG] human gut metagenome; faeces
99532
99618
+
Leu
GAG
[ENA]
¢þ
>WENV180449375
OBXG01000004
[OBXG] human gut metagenome; faeces
103396
103472
+
fMet
CAT
[ENA]
¢þ
>WENV180449377
OBXG01000005
[OBXG] human gut metagenome; faeces
120260
120347
+
Ser
GGA
[ENA]
¢þ
>WENV180449387
OBXG01000007
[OBXG] human gut metagenome; faeces
120354
120281
-
Gly
CCC
[ENA]
¢þ
>WENV180449398
OBXG01000014
[OBXG] human gut metagenome; faeces
134850
134944
+
SeC
TCA
[ENA]
¢þ
>WENV180449355
OBXG01000001
[OBXG] human gut metagenome; faeces
135797
135722
-
Lys
TTT
[ENA]
¢þ
>WENV180449354
OBXG01000001
[OBXG] human gut metagenome; faeces
135906
135831
-
Lys
TTT
[ENA]
¢þ
>WENV180449353
OBXG01000001
[OBXG] human gut metagenome; faeces
136030
135955
-
Lys
TTT
[ENA]
¢þ
>WENV180449352
OBXG01000001
[OBXG] human gut metagenome; faeces
136109
136034
-
Val
TAC
[ENA]
¢þ
>WENV180449351
OBXG01000001
[OBXG] human gut metagenome; faeces
136236
136161
-
Lys
TTT
[ENA]
¢þ
>WENV180449350
OBXG01000001
[OBXG] human gut metagenome; faeces
136316
136241
-
Val
TAC
[ENA]
¢þ
>WENV180449349
OBXG01000001
[OBXG] human gut metagenome; faeces
136427
136352
-
Lys
TTT
[ENA]
¢þ
>WENV180449392
OBXG01000010
[OBXG] human gut metagenome; faeces
146979
146904
-
Gly
GCC
[ENA]
¢þ
>WENV180449391
OBXG01000010
[OBXG] human gut metagenome; faeces
147091
147016
-
Gly
GCC
[ENA]
¢þ
>WENV180449390
OBXG01000010
[OBXG] human gut metagenome; faeces
147203
147128
-
Gly
GCC
[ENA]
¢þ
>WENV180449378
OBXG01000005
[OBXG] human gut metagenome; faeces
172266
172353
+
Ser
TGA
[ENA]
¢þ
>WENV180449389
OBXG01000010
[OBXG] human gut metagenome; faeces
176637
176712
+
Phe
GAA
[ENA]
¢þ
>WENV180449372
OBXG01000003
[OBXG] human gut metagenome; faeces
188967
188892
-
Lys
TTT
[ENA]
¢þ
>WENV180449371
OBXG01000003
[OBXG] human gut metagenome; faeces
189047
188972
-
Val
TAC
[ENA]
¢þ
>WENV180449370
OBXG01000003
[OBXG] human gut metagenome; faeces
189169
189094
-
Val
TAC
[ENA]
¢þ
>WENV180449369
OBXG01000003
[OBXG] human gut metagenome; faeces
189291
189216
-
Val
TAC
[ENA]
¢þ
>WENV180449366
OBXG01000003
[OBXG] human gut metagenome; faeces
191990
192065
+
Ala
GGC
[ENA]
¢þ
>WENV180449367
OBXG01000003
[OBXG] human gut metagenome; faeces
192105
192180
+
Ala
GGC
[ENA]
¢þ
>WENV180449376
OBXG01000004
[OBXG] human gut metagenome; faeces
198106
198031
-
Ile2
CAT
[ENA]
¢þ
>WENV180449340
OBXG01000001
[OBXG] human gut metagenome; faeces
208789
208865
+
Met
CAT
[ENA]
¢þ
>WENV180449341
OBXG01000001
[OBXG] human gut metagenome; faeces
208876
208960
+
Leu
TAG
[ENA]
¢þ
>WENV180449342
OBXG01000001
[OBXG] human gut metagenome; faeces
208984
209058
+
Gln
TTG
[ENA]
¢þ
>WENV180449343
OBXG01000001
[OBXG] human gut metagenome; faeces
209093
209167
+
Gln
TTG
[ENA]
¢þ
>WENV180449344
OBXG01000001
[OBXG] human gut metagenome; faeces
209183
209259
+
Met
CAT
[ENA]
¢þ
>WENV180449345
OBXG01000001
[OBXG] human gut metagenome; faeces
209308
209382
+
Gln
CTG
[ENA]
¢þ
>WENV180449346
OBXG01000001
[OBXG] human gut metagenome; faeces
209420
209494
+
Gln
CTG
[ENA]
¢þ
>WENV180449388
OBXG01000008
[OBXG] human gut metagenome; faeces
209422
209498
+
Pro
GGG
[ENA]
¢þ
>WENV180449386
OBXG01000007
[OBXG] human gut metagenome; faeces
230372
230447
+
Phe
GAA
[ENA]
¢þ
>WENV180449368
OBXG01000003
[OBXG] human gut metagenome; faeces
232354
232280
-
Arg
CCT
[ENA]
¢þ
>WENV180449379
OBXG01000005
[OBXG] human gut metagenome; faeces
268123
268210
+
Ser
GGA
[ENA]
¢þ
>WENV180449365
OBXG01000002
[OBXG] human gut metagenome; faeces
286099
286013
-
Leu
TAA
[ENA]
¢þ
>WENV180449364
OBXG01000002
[OBXG] human gut metagenome; faeces
286185
286112
-
Cys
GCA
[ENA]
¢þ
>WENV180449363
OBXG01000002
[OBXG] human gut metagenome; faeces
286315
286240
-
Gly
GCC
[ENA]
¢þ
>WENV180449348
OBXG01000001
[OBXG] human gut metagenome; faeces
311676
311600
-
Arg
TCT
[ENA]
¢þ
>WENV180449362
OBXG01000002
[OBXG] human gut metagenome; faeces
339259
339170
-
Ser
CGA
[ENA]
¢þ
>WENV180449358
OBXG01000002
[OBXG] human gut metagenome; faeces
340251
340326
+
Asn
GTT
[ENA]
¢þ
>WENV180449361
OBXG01000002
[OBXG] human gut metagenome; faeces
380219
380144
-
Asn
GTT
[ENA]
¢þ
>WENV180449359
OBXG01000002
[OBXG] human gut metagenome; faeces
381968
382043
+
Asn
GTT
[ENA]
¢þ
>WENV180449360
OBXG01000002
[OBXG] human gut metagenome; faeces
384376
384451
+
Asn
GTT
[ENA]
¢þ
>WENV180449347
OBXG01000001
[OBXG] human gut metagenome; faeces
587324
587249
-
Thr
CGT
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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