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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA gene List
[OBYT] human gut metagenome; faeces
HIT:
113 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV180474897
OBYT01000214
[OBYT] human gut metagenome; faeces
3
76
+
Arg
TCT
[ENA]
¢þ
>WENV180474909
OBYT01001112
[OBYT] human gut metagenome; faeces
18
90
+
Val
GAC
[ENA]
¢þ
>WENV180474902
OBYT01000260
[OBYT] human gut metagenome; faeces
102
176
+
Ala
TGC
[ENA]
¢þ
>WENV180474884
OBYT01000122
[OBYT] human gut metagenome; faeces
175
248
+
Glu
CTC
[ENA]
¢þ
>WENV180474910
OBYT01001541
[OBYT] human gut metagenome; faeces
204
131
-
Glu
TTC
[ENA]
¢þ
>WENV180474908
OBYT01000515
[OBYT] human gut metagenome; faeces
219
145
-
Gln
TTG
[ENA]
¢þ
>WENV180474877
OBYT01000064
[OBYT] human gut metagenome; faeces
234
150
-
Leu
CAG
[ENA]
¢þ
>WENV180474845
OBYT01000011
[OBYT] human gut metagenome; faeces
301
229
-
Cys
GCA
[ENA]
¢þ
>WENV180474844
OBYT01000011
[OBYT] human gut metagenome; faeces
432
360
-
Cys
GCA
[ENA]
¢þ
>WENV180474857
OBYT01000026
[OBYT] human gut metagenome; faeces
607
681
+
His
GTG
[ENA]
¢þ
>WENV180474903
OBYT01000322
[OBYT] human gut metagenome; faeces
626
698
+
Val
TAC
[ENA]
¢þ
>WENV180474890
OBYT01000136
[OBYT] human gut metagenome; faeces
656
729
+
Gly
GCC
[ENA]
¢þ
>WENV180474904
OBYT01000322
[OBYT] human gut metagenome; faeces
701
773
+
Asp
GTC
[ENA]
¢þ
>WENV180474895
OBYT01000204
[OBYT] human gut metagenome; faeces
737
810
+
Val
TAC
[ENA]
¢þ
>WENV180474858
OBYT01000026
[OBYT] human gut metagenome; faeces
773
847
+
His
GTG
[ENA]
¢þ
>WENV180474905
OBYT01000322
[OBYT] human gut metagenome; faeces
793
865
+
Lys
TTT
[ENA]
¢þ
>WENV180474891
OBYT01000136
[OBYT] human gut metagenome; faeces
794
867
+
Cys
GCA
[ENA]
¢þ
>WENV180474896
OBYT01000204
[OBYT] human gut metagenome; faeces
851
924
+
Val
TAC
[ENA]
¢þ
>WENV180474906
OBYT01000322
[OBYT] human gut metagenome; faeces
870
953
+
Leu
TAG
[ENA]
¢þ
>WENV180474875
OBYT01000062
[OBYT] human gut metagenome; faeces
961
875
-
Leu
GAG
[ENA]
¢þ
>WENV180474907
OBYT01000322
[OBYT] human gut metagenome; faeces
966
1038
+
Thr
TGT
[ENA]
¢þ
>WENV180474874
OBYT01000062
[OBYT] human gut metagenome; faeces
1198
1125
-
Gly
TCC
[ENA]
¢þ
>WENV180474901
OBYT01000234
[OBYT] human gut metagenome; faeces
1294
1368
+
Pro
GGG
[ENA]
¢þ
>WENV180474873
OBYT01000062
[OBYT] human gut metagenome; faeces
1513
1588
+
Pro
TGG
[ENA]
¢þ
>WENV180474889
OBYT01000135
[OBYT] human gut metagenome; faeces
2192
2265
+
Ala
GGC
[ENA]
¢þ
>WENV180474893
OBYT01000190
[OBYT] human gut metagenome; faeces
2221
2147
-
His
GTG
[ENA]
¢þ
>WENV180474900
OBYT01000225
[OBYT] human gut metagenome; faeces
2231
2157
-
Thr
CGT
[ENA]
¢þ
>WENV180474899
OBYT01000222
[OBYT] human gut metagenome; faeces
3243
3169
-
Ala
TGC
[ENA]
¢þ
>WENV180474898
OBYT01000222
[OBYT] human gut metagenome; faeces
3327
3253
-
Ile
GAT
[ENA]
¢þ
>WENV180474892
OBYT01000150
[OBYT] human gut metagenome; faeces
4302
4220
-
Leu
CAA
[ENA]
¢þ
>WENV180474888
OBYT01000128
[OBYT] human gut metagenome; faeces
4373
4299
-
fMet
CAT
[ENA]
¢þ
>WENV180474894
OBYT01000195
[OBYT] human gut metagenome; faeces
4595
4667
+
Gln
CTG
[ENA]
¢þ
>WENV180474887
OBYT01000126
[OBYT] human gut metagenome; faeces
5247
5174
-
Lys
TTT
[ENA]
¢þ
>WENV180474886
OBYT01000124
[OBYT] human gut metagenome; faeces
6266
6184
-
Leu
TAG
[ENA]
¢þ
>WENV180474881
OBYT01000091
[OBYT] human gut metagenome; faeces
7211
7138
-
Trp
CCA
[ENA]
¢þ
>WENV180474882
OBYT01000103
[OBYT] human gut metagenome; faeces
7423
7513
+
Ser
TGA
[ENA]
¢þ
>WENV180474885
OBYT01000124
[OBYT] human gut metagenome; faeces
7715
7788
+
Lys
CTT
[ENA]
¢þ
>WENV180474879
OBYT01000077
[OBYT] human gut metagenome; faeces
8690
8602
-
Ser
CGA
[ENA]
¢þ
>WENV180474880
OBYT01000089
[OBYT] human gut metagenome; faeces
8821
8893
+
Gln
TTG
[ENA]
¢þ
>WENV180474876
OBYT01000063
[OBYT] human gut metagenome; faeces
8914
8987
+
Arg
CCT
[ENA]
¢þ
>WENV180474883
OBYT01000103
[OBYT] human gut metagenome; faeces
9329
9418
+
Ser
GCT
[ENA]
¢þ
>WENV180474869
OBYT01000050
[OBYT] human gut metagenome; faeces
9748
9833
+
Ser
GGA
[ENA]
¢þ
>WENV180474878
OBYT01000069
[OBYT] human gut metagenome; faeces
10447
10372
-
Leu
TAA
[ENA]
¢þ
>WENV180474871
OBYT01000054
[OBYT] human gut metagenome; faeces
11971
11897
-
Ile2
CAT
[ENA]
¢þ
>WENV180474872
OBYT01000061
[OBYT] human gut metagenome; faeces
12033
11959
-
Thr
TGT
[ENA]
¢þ
>WENV180474856
OBYT01000024
[OBYT] human gut metagenome; faeces
12039
12112
+
Arg
CCG
[ENA]
¢þ
>WENV180474870
OBYT01000054
[OBYT] human gut metagenome; faeces
16418
16345
-
Asn
GTT
[ENA]
¢þ
>WENV180474865
OBYT01000041
[OBYT] human gut metagenome; faeces
18564
18482
-
Tyr
GTA
[ENA]
¢þ
>WENV180474841
OBYT01000010
[OBYT] human gut metagenome; faeces
19590
19502
-
Ser
GGA
[ENA]
¢þ
>WENV180474840
OBYT01000010
[OBYT] human gut metagenome; faeces
20846
20761
-
Ser
TGA
[ENA]
¢þ
>WENV180474863
OBYT01000035
[OBYT] human gut metagenome; faeces
21349
21273
-
Pro
CGG
[ENA]
¢þ
>WENV180474866
OBYT01000042
[OBYT] human gut metagenome; faeces
21925
21999
+
Ile
GAT
[ENA]
¢þ
>WENV180474862
OBYT01000034
[OBYT] human gut metagenome; faeces
22107
22178
+
Gly
CCC
[ENA]
¢þ
>WENV180474867
OBYT01000042
[OBYT] human gut metagenome; faeces
22166
22239
+
Ala
TGC
[ENA]
¢þ
>WENV180474868
OBYT01000042
[OBYT] human gut metagenome; faeces
26945
27018
+
Ala
TGC
[ENA]
¢þ
>WENV180474837
OBYT01000010
[OBYT] human gut metagenome; faeces
28862
28935
+
Lys
CTT
[ENA]
¢þ
>WENV180474838
OBYT01000010
[OBYT] human gut metagenome; faeces
28954
29027
+
Lys
CTT
[ENA]
¢þ
>WENV180474839
OBYT01000010
[OBYT] human gut metagenome; faeces
29042
29127
+
Ser
TGA
[ENA]
¢þ
>WENV180474864
OBYT01000040
[OBYT] human gut metagenome; faeces
29683
29756
+
Arg
ACG
[ENA]
¢þ
>WENV180474861
OBYT01000033
[OBYT] human gut metagenome; faeces
31313
31226
-
Ser
GCT
[ENA]
¢þ
>WENV180474843
OBYT01000011
[OBYT] human gut metagenome; faeces
34030
33959
-
Gln
CTG
[ENA]
¢þ
>WENV180474831
OBYT01000009
[OBYT] human gut metagenome; faeces
34045
34118
+
Lys
TTT
[ENA]
¢þ
>WENV180474842
OBYT01000011
[OBYT] human gut metagenome; faeces
34134
34063
-
Gln
CTG
[ENA]
¢þ
>WENV180474860
OBYT01000029
[OBYT] human gut metagenome; faeces
39538
39464
-
Asp
GTC
[ENA]
¢þ
>WENV180474855
OBYT01000023
[OBYT] human gut metagenome; faeces
39587
39513
-
Thr
TGT
[ENA]
¢þ
>WENV180474859
OBYT01000029
[OBYT] human gut metagenome; faeces
39664
39591
-
Glu
TTC
[ENA]
¢þ
>WENV180474854
OBYT01000023
[OBYT] human gut metagenome; faeces
59663
59579
-
Tyr
GTA
[ENA]
¢þ
>WENV180474830
OBYT01000008
[OBYT] human gut metagenome; faeces
61564
61492
-
Arg
CCT
[ENA]
¢þ
>WENV180474827
OBYT01000008
[OBYT] human gut metagenome; faeces
63204
63276
+
Glu
TTC
[ENA]
¢þ
>WENV180474828
OBYT01000008
[OBYT] human gut metagenome; faeces
63640
63714
+
Glu
TTC
[ENA]
¢þ
>WENV180474853
OBYT01000020
[OBYT] human gut metagenome; faeces
68539
68464
-
Phe
GAA
[ENA]
¢þ
>WENV180474823
OBYT01000006
[OBYT] human gut metagenome; faeces
83641
83570
-
Gln
TTG
[ENA]
¢þ
>WENV180474848
OBYT01000014
[OBYT] human gut metagenome; faeces
103612
103686
+
Arg
TCT
[ENA]
¢þ
>WENV180474819
OBYT01000004
[OBYT] human gut metagenome; faeces
111553
111479
-
Asn
GTT
[ENA]
¢þ
>WENV180474818
OBYT01000004
[OBYT] human gut metagenome; faeces
111670
111596
-
Asn
GTT
[ENA]
¢þ
>WENV180474817
OBYT01000004
[OBYT] human gut metagenome; faeces
111775
111701
-
Asn
GTT
[ENA]
¢þ
>WENV180474829
OBYT01000008
[OBYT] human gut metagenome; faeces
118457
118382
-
Met
CAT
[ENA]
¢þ
>WENV180474851
OBYT01000017
[OBYT] human gut metagenome; faeces
119921
119996
+
Pro
TGG
[ENA]
¢þ
>WENV180474836
OBYT01000009
[OBYT] human gut metagenome; faeces
120437
120354
-
Tyr
GTA
[ENA]
¢þ
>WENV180474835
OBYT01000009
[OBYT] human gut metagenome; faeces
120530
120456
-
Thr
TGT
[ENA]
¢þ
>WENV180474826
OBYT01000007
[OBYT] human gut metagenome; faeces
123043
122971
-
fMet
CAT
[ENA]
¢þ
>WENV180474850
OBYT01000016
[OBYT] human gut metagenome; faeces
124917
124991
+
Ile2
CAT
[ENA]
¢þ
>WENV180474822
OBYT01000005
[OBYT] human gut metagenome; faeces
131807
131725
-
Leu
TAG
[ENA]
¢þ
>WENV180474852
OBYT01000017
[OBYT] human gut metagenome; faeces
132582
132654
+
fMet
CAT
[ENA]
¢þ
>WENV180474846
OBYT01000012
[OBYT] human gut metagenome; faeces
133127
133202
+
Asp
GTC
[ENA]
¢þ
>WENV180474847
OBYT01000012
[OBYT] human gut metagenome; faeces
133234
133308
+
Asp
GTC
[ENA]
¢þ
>WENV180474824
OBYT01000007
[OBYT] human gut metagenome; faeces
147967
148054
+
Ser
CGA
[ENA]
¢þ
>WENV180474849
OBYT01000014
[OBYT] human gut metagenome; faeces
150975
150902
-
Gly
CCC
[ENA]
¢þ
>WENV180474816
OBYT01000004
[OBYT] human gut metagenome; faeces
154809
154736
-
Gly
GCC
[ENA]
¢þ
>WENV180474815
OBYT01000004
[OBYT] human gut metagenome; faeces
154909
154824
-
Leu
TAA
[ENA]
¢þ
>WENV180474814
OBYT01000004
[OBYT] human gut metagenome; faeces
155005
154932
-
Gly
GCC
[ENA]
¢þ
>WENV180474802
OBYT01000002
[OBYT] human gut metagenome; faeces
168550
168478
-
Glu
CTC
[ENA]
¢þ
>WENV180474813
OBYT01000004
[OBYT] human gut metagenome; faeces
187229
187154
-
Val
TAC
[ENA]
¢þ
>WENV180474812
OBYT01000004
[OBYT] human gut metagenome; faeces
187338
187263
-
Val
TAC
[ENA]
¢þ
>WENV180474811
OBYT01000004
[OBYT] human gut metagenome; faeces
187447
187372
-
Val
TAC
[ENA]
¢þ
>WENV180474810
OBYT01000004
[OBYT] human gut metagenome; faeces
195784
195696
-
Ser
GGA
[ENA]
¢þ
>WENV180474798
OBYT01000002
[OBYT] human gut metagenome; faeces
201707
201781
+
Thr
TGT
[ENA]
¢þ
>WENV180474799
OBYT01000002
[OBYT] human gut metagenome; faeces
201800
201883
+
Tyr
GTA
[ENA]
¢þ
>WENV180474800
OBYT01000002
[OBYT] human gut metagenome; faeces
202010
202082
+
Thr
GGT
[ENA]
¢þ
>WENV180474801
OBYT01000002
[OBYT] human gut metagenome; faeces
203371
203444
+
Trp
CCA
[ENA]
¢þ
>WENV180474825
OBYT01000007
[OBYT] human gut metagenome; faeces
219293
219367
+
Asp
GTC
[ENA]
¢þ
>WENV180474820
OBYT01000005
[OBYT] human gut metagenome; faeces
221630
221714
+
Leu
CAA
[ENA]
¢þ
>WENV180474803
OBYT01000003
[OBYT] human gut metagenome; faeces
249136
249211
+
Pro
GGG
[ENA]
¢þ
>WENV180474804
OBYT01000004
[OBYT] human gut metagenome; faeces
259847
259931
+
Leu
CAG
[ENA]
¢þ
>WENV180474834
OBYT01000009
[OBYT] human gut metagenome; faeces
263436
263352
-
Leu
GAG
[ENA]
¢þ
>WENV180474833
OBYT01000009
[OBYT] human gut metagenome; faeces
263534
263447
-
Leu
CAG
[ENA]
¢þ
>WENV180474832
OBYT01000009
[OBYT] human gut metagenome; faeces
263622
263549
-
Gly
GCC
[ENA]
¢þ
>WENV180474805
OBYT01000004
[OBYT] human gut metagenome; faeces
273116
273189
+
Thr
CGT
[ENA]
¢þ
>WENV180474809
OBYT01000004
[OBYT] human gut metagenome; faeces
273503
273427
-
Ala
GGC
[ENA]
¢þ
>WENV180474821
OBYT01000005
[OBYT] human gut metagenome; faeces
312672
312747
+
Lys
TTT
[ENA]
¢þ
>WENV180474808
OBYT01000004
[OBYT] human gut metagenome; faeces
312816
312743
-
Trp
CCA
[ENA]
¢þ
>WENV180474807
OBYT01000004
[OBYT] human gut metagenome; faeces
314377
314303
-
Pro
CGG
[ENA]
¢þ
>WENV180474806
OBYT01000004
[OBYT] human gut metagenome; faeces
314577
314650
+
Phe
GAA
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
BACK