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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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BLAST
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HOW TO USE
tRNA gene List
[OCFR] soil metagenome; soil
HIT:
6 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV180509694
OCFR01000007
[OCFR] soil metagenome; soil
87
162
+
Glu
TTC
[ENA]
¢þ
>WENV180509697
OCFR01000224
[OCFR] soil metagenome; soil
95
20
-
Asn
GTT
[ENA]
¢þ
>WENV180509699
OCFR01001107
[OCFR] soil metagenome; soil
136
49
-
Ser
GGA
[ENA]
¢þ
>WENV180509698
OCFR01000271
[OCFR] soil metagenome; soil
146
222
+
Asp
GTC
[ENA]
¢þ
>WENV180509696
OCFR01000013
[OCFR] soil metagenome; soil
180
105
-
Ala
TGC
[ENA]
¢þ
>WENV180509695
OCFR01000013
[OCFR] soil metagenome; soil
299
223
-
Ile
GAT
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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