This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA gene List
[OCFW] soil metagenome; soil
HIT:
72 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV180509911
OCFW01000065
[OCFW] soil metagenome; soil
8
95
+
Ser
GGA
[ENA]
¢þ
>WENV180509888
OCFW01000025
[OCFW] soil metagenome; soil
72
147
+
Thr
GGT
[ENA]
¢þ
>WENV180509927
OCFW01000367
[OCFW] soil metagenome; soil
78
3
-
Gly
GCC
[ENA]
¢þ
>WENV180509926
OCFW01000366
[OCFW] soil metagenome; soil
86
10
-
Arg
ACG
[ENA]
¢þ
>WENV180509881
OCFW01000018
[OCFW] soil metagenome; soil
112
188
+
Asp
GTC
[ENA]
¢þ
>WENV180509922
OCFW01000213
[OCFW] soil metagenome; soil
127
202
+
Glu
TTC
[ENA]
¢þ
>WENV180509865
OCFW01000007
[OCFW] soil metagenome; soil
150
58
-
Ser
GCT
[ENA]
¢þ
>WENV180509924
OCFW01000237
[OCFW] soil metagenome; soil
186
111
-
Ala
TGC
[ENA]
¢þ
>WENV180509882
OCFW01000018
[OCFW] soil metagenome; soil
197
272
+
Trp
CCA
[ENA]
¢þ
>WENV180509921
OCFW01000186
[OCFW] soil metagenome; soil
213
288
+
Glu
TTC
[ENA]
¢þ
>WENV180509925
OCFW01000292
[OCFW] soil metagenome; soil
268
193
-
Lys
TTT
[ENA]
¢þ
>WENV180509923
OCFW01000237
[OCFW] soil metagenome; soil
305
229
-
Ile
GAT
[ENA]
¢þ
>WENV180509920
OCFW01000077
[OCFW] soil metagenome; soil
381
306
-
Thr
GGT
[ENA]
¢þ
>WENV180509909
OCFW01000053
[OCFW] soil metagenome; soil
443
359
-
Tyr
GTA
[ENA]
¢þ
>WENV180509919
OCFW01000077
[OCFW] soil metagenome; soil
461
387
-
Gly
TCC
[ENA]
¢þ
>WENV180509918
OCFW01000077
[OCFW] soil metagenome; soil
662
578
-
Tyr
GTA
[ENA]
¢þ
>WENV180509908
OCFW01000053
[OCFW] soil metagenome; soil
737
653
-
Tyr
GTA
[ENA]
¢þ
>WENV180509917
OCFW01000077
[OCFW] soil metagenome; soil
746
671
-
Thr
TGT
[ENA]
¢þ
>WENV180509906
OCFW01000036
[OCFW] soil metagenome; soil
1161
1085
-
Arg
TCT
[ENA]
¢þ
>WENV180509876
OCFW01000011
[OCFW] soil metagenome; soil
1421
1348
-
Gly
CCC
[ENA]
¢þ
>WENV180509913
OCFW01000066
[OCFW] soil metagenome; soil
2222
2146
-
Asp
GTC
[ENA]
¢þ
>WENV180509916
OCFW01000075
[OCFW] soil metagenome; soil
2554
2479
-
Ala
GGC
[ENA]
¢þ
>WENV180509915
OCFW01000075
[OCFW] soil metagenome; soil
2669
2594
-
Ala
GGC
[ENA]
¢þ
>WENV180509910
OCFW01000064
[OCFW] soil metagenome; soil
3292
3367
+
Thr
CGT
[ENA]
¢þ
>WENV180509874
OCFW01000009
[OCFW] soil metagenome; soil
3971
3896
-
Asn
GTT
[ENA]
¢þ
>WENV180509914
OCFW01000075
[OCFW] soil metagenome; soil
5369
5444
+
Val
TAC
[ENA]
¢þ
>WENV180509873
OCFW01000009
[OCFW] soil metagenome; soil
6380
6305
-
Asn
GTT
[ENA]
¢þ
>WENV180509898
OCFW01000030
[OCFW] soil metagenome; soil
7530
7456
-
Sup
CTA
[ENA]
¢þ
>WENV180509897
OCFW01000030
[OCFW] soil metagenome; soil
7642
7568
-
Gln
CTG
[ENA]
¢þ
>WENV180509896
OCFW01000030
[OCFW] soil metagenome; soil
7766
7690
-
Met
CAT
[ENA]
¢þ
>WENV180509895
OCFW01000030
[OCFW] soil metagenome; soil
7856
7782
-
Gln
TTG
[ENA]
¢þ
>WENV180509894
OCFW01000030
[OCFW] soil metagenome; soil
7965
7891
-
Gln
TTG
[ENA]
¢þ
>WENV180509893
OCFW01000030
[OCFW] soil metagenome; soil
8073
7989
-
Leu
TAG
[ENA]
¢þ
>WENV180509867
OCFW01000009
[OCFW] soil metagenome; soil
8129
8204
+
Asn
GTT
[ENA]
¢þ
>WENV180509892
OCFW01000030
[OCFW] soil metagenome; soil
8159
8083
-
Met
CAT
[ENA]
¢þ
>WENV180509912
OCFW01000066
[OCFW] soil metagenome; soil
10225
10149
-
Asp
GTC
[ENA]
¢þ
>WENV180509889
OCFW01000028
[OCFW] soil metagenome; soil
11995
12071
+
Pro
CGG
[ENA]
¢þ
>WENV180509891
OCFW01000029
[OCFW] soil metagenome; soil
16139
16064
-
Ile2
CAT
[ENA]
¢þ
>WENV180509872
OCFW01000009
[OCFW] soil metagenome; soil
21682
21607
-
Asn
GTT
[ENA]
¢þ
>WENV180509868
OCFW01000009
[OCFW] soil metagenome; soil
22674
22763
+
Ser
CGA
[ENA]
¢þ
>WENV180509860
OCFW01000006
[OCFW] soil metagenome; soil
28226
28301
+
Ile2
CAT
[ENA]
¢þ
>WENV180509859
OCFW01000005
[OCFW] soil metagenome; soil
29789
29864
+
Phe
GAA
[ENA]
¢þ
>WENV180509907
OCFW01000040
[OCFW] soil metagenome; soil
32335
32264
-
fMet
CAT
[ENA]
¢þ
>WENV180509883
OCFW01000018
[OCFW] soil metagenome; soil
35615
35691
+
Arg
CCG
[ENA]
¢þ
>WENV180509884
OCFW01000018
[OCFW] soil metagenome; soil
35750
35825
+
His
GTG
[ENA]
¢þ
>WENV180509885
OCFW01000018
[OCFW] soil metagenome; soil
35846
35932
+
Leu
CAG
[ENA]
¢þ
>WENV180509886
OCFW01000018
[OCFW] soil metagenome; soil
35975
36051
+
Pro
TGG
[ENA]
¢þ
>WENV180509905
OCFW01000035
[OCFW] soil metagenome; soil
36569
36645
+
Pro
GGG
[ENA]
¢þ
>WENV180509899
OCFW01000031
[OCFW] soil metagenome; soil
41913
41988
+
Lys
TTT
[ENA]
¢þ
>WENV180509900
OCFW01000031
[OCFW] soil metagenome; soil
42124
42199
+
Val
TAC
[ENA]
¢þ
>WENV180509901
OCFW01000031
[OCFW] soil metagenome; soil
42204
42279
+
Lys
TTT
[ENA]
¢þ
>WENV180509902
OCFW01000031
[OCFW] soil metagenome; soil
42429
42504
+
Val
TAC
[ENA]
¢þ
>WENV180509903
OCFW01000031
[OCFW] soil metagenome; soil
42509
42584
+
Lys
TTT
[ENA]
¢þ
>WENV180509904
OCFW01000031
[OCFW] soil metagenome; soil
42731
42806
+
Lys
TTT
[ENA]
¢þ
>WENV180509890
OCFW01000029
[OCFW] soil metagenome; soil
48161
48085
-
Arg
ACG
[ENA]
¢þ
>WENV180509878
OCFW01000014
[OCFW] soil metagenome; soil
50693
50779
+
Leu
CAG
[ENA]
¢þ
>WENV180509879
OCFW01000014
[OCFW] soil metagenome; soil
50808
50894
+
Leu
CAG
[ENA]
¢þ
>WENV180509880
OCFW01000014
[OCFW] soil metagenome; soil
50929
51015
+
Leu
CAG
[ENA]
¢þ
>WENV180509887
OCFW01000022
[OCFW] soil metagenome; soil
61882
61966
+
Leu
CAA
[ENA]
¢þ
>WENV180509869
OCFW01000009
[OCFW] soil metagenome; soil
74114
74189
+
Gly
GCC
[ENA]
¢þ
>WENV180509870
OCFW01000009
[OCFW] soil metagenome; soil
74244
74317
+
Cys
GCA
[ENA]
¢þ
>WENV180509871
OCFW01000009
[OCFW] soil metagenome; soil
74330
74416
+
Leu
TAA
[ENA]
¢þ
>WENV180509856
OCFW01000001
[OCFW] soil metagenome; soil
94942
95018
+
Val
GAC
[ENA]
¢þ
>WENV180509857
OCFW01000001
[OCFW] soil metagenome; soil
95023
95099
+
Val
GAC
[ENA]
¢þ
>WENV180509866
OCFW01000008
[OCFW] soil metagenome; soil
105280
105186
-
SeC
TCA
[ENA]
¢þ
>WENV180509877
OCFW01000013
[OCFW] soil metagenome; soil
105789
105702
-
Ser
TGA
[ENA]
¢þ
>WENV180509875
OCFW01000011
[OCFW] soil metagenome; soil
112730
112805
+
Phe
GAA
[ENA]
¢þ
>WENV180509863
OCFW01000007
[OCFW] soil metagenome; soil
128831
128907
+
fMet
CAT
[ENA]
¢þ
>WENV180509864
OCFW01000007
[OCFW] soil metagenome; soil
128941
129017
+
fMet
CAT
[ENA]
¢þ
>WENV180509862
OCFW01000006
[OCFW] soil metagenome; soil
130917
130841
-
fMet
CAT
[ENA]
¢þ
>WENV180509861
OCFW01000006
[OCFW] soil metagenome; soil
134786
134700
-
Leu
GAG
[ENA]
¢þ
>WENV180509858
OCFW01000002
[OCFW] soil metagenome; soil
175912
175986
+
Arg
CCT
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
BACK