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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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BLAST
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HOW TO USE
tRNA gene List
[OCFY] soil metagenome; soil
HIT:
15 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV180509963
OCFY01002117
[OCFY] soil metagenome; soil
96
22
-
Gln
CTG
[ENA]
¢þ
>WENV180509959
OCFY01001564
[OCFY] soil metagenome; soil
105
30
-
Asn
GTT
[ENA]
¢þ
>WENV180509964
OCFY01002553
[OCFY] soil metagenome; soil
108
184
+
Arg
ACG
[ENA]
¢þ
>WENV180509961
OCFY01001895
[OCFY] soil metagenome; soil
160
85
-
Gly
GCC
[ENA]
¢þ
>WENV180509953
OCFY01000009
[OCFY] soil metagenome; soil
170
95
-
Ala
TGC
[ENA]
¢þ
>WENV180509954
OCFY01000211
[OCFY] soil metagenome; soil
173
100
-
Gly
CCC
[ENA]
¢þ
>WENV180509965
OCFY01004046
[OCFY] soil metagenome; soil
185
109
-
Pro
GGG
[ENA]
¢þ
>WENV180509957
OCFY01001090
[OCFY] soil metagenome; soil
185
260
+
Val
TAC
[ENA]
¢þ
>WENV180509962
OCFY01002117
[OCFY] soil metagenome; soil
220
144
-
Met
CAT
[ENA]
¢þ
>WENV180509958
OCFY01001090
[OCFY] soil metagenome; soil
264
339
+
Lys
TTT
[ENA]
¢þ
>WENV180509952
OCFY01000009
[OCFY] soil metagenome; soil
289
213
-
Ile
GAT
[ENA]
¢þ
>WENV180509960
OCFY01001679
[OCFY] soil metagenome; soil
297
211
-
Leu
GAG
[ENA]
¢þ
>WENV180509956
OCFY01000477
[OCFY] soil metagenome; soil
300
389
+
Ser
CGA
[ENA]
¢þ
>WENV180509955
OCFY01000232
[OCFY] soil metagenome; soil
329
254
-
Phe
GAA
[ENA]
¢þ
>WENV180509951
OCFY01000001
[OCFY] soil metagenome; soil
3507
3582
+
Trp
CCA
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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