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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA gene List
[OCGA] soil metagenome; soil
HIT:
14 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV180510018
OCGA01000314
[OCGA] soil metagenome; soil
72
158
+
Leu
CAG
[ENA]
¢þ
>WENV180510024
OCGA01002975
[OCGA] soil metagenome; soil
95
171
+
Arg
ACG
[ENA]
¢þ
>WENV180510022
OCGA01002581
[OCGA] soil metagenome; soil
109
33
-
Met
CAT
[ENA]
¢þ
>WENV180510017
OCGA01000240
[OCGA] soil metagenome; soil
132
48
-
Tyr
GTA
[ENA]
¢þ
>WENV180510020
OCGA01001035
[OCGA] soil metagenome; soil
191
275
+
Leu
CAA
[ENA]
¢þ
>WENV180510021
OCGA01002581
[OCGA] soil metagenome; soil
199
125
-
Gln
TTG
[ENA]
¢þ
>WENV180510019
OCGA01000314
[OCGA] soil metagenome; soil
201
277
+
Pro
TGG
[ENA]
¢þ
>WENV180510023
OCGA01002844
[OCGA] soil metagenome; soil
212
137
-
Lys
TTT
[ENA]
¢þ
>WENV180510016
OCGA01000240
[OCGA] soil metagenome; soil
216
141
-
Thr
TGT
[ENA]
¢þ
>WENV180510015
OCGA01000047
[OCGA] soil metagenome; soil
272
199
-
Gly
CCC
[ENA]
¢þ
>WENV180510013
OCGA01000005
[OCGA] soil metagenome; soil
1821
1897
+
Ile
GAT
[ENA]
¢þ
>WENV180510014
OCGA01000005
[OCGA] soil metagenome; soil
1940
2015
+
Ala
TGC
[ENA]
¢þ
>WENV180510011
OCGA01000001
[OCGA] soil metagenome; soil
18784
18709
-
Asn
GTT
[ENA]
¢þ
>WENV180510012
OCGA01000002
[OCGA] soil metagenome; soil
21327
21252
-
Trp
CCA
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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