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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA gene List
[OCGO] soil metagenome; soil
HIT:
71 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV180510365
OCGO01000019
[OCGO] soil metagenome; soil
112
188
+
Asp
GTC
[ENA]
¢þ
>WENV180510400
OCGO01000110
[OCGO] soil metagenome; soil
186
111
-
Ala
TGC
[ENA]
¢þ
>WENV180510366
OCGO01000019
[OCGO] soil metagenome; soil
197
272
+
Trp
CCA
[ENA]
¢þ
>WENV180510398
OCGO01000102
[OCGO] soil metagenome; soil
213
288
+
Glu
TTC
[ENA]
¢þ
>WENV180510401
OCGO01000164
[OCGO] soil metagenome; soil
268
193
-
Lys
TTT
[ENA]
¢þ
>WENV180510399
OCGO01000110
[OCGO] soil metagenome; soil
305
229
-
Ile
GAT
[ENA]
¢þ
>WENV180510397
OCGO01000065
[OCGO] soil metagenome; soil
381
306
-
Thr
GGT
[ENA]
¢þ
>WENV180510396
OCGO01000065
[OCGO] soil metagenome; soil
461
387
-
Gly
TCC
[ENA]
¢þ
>WENV180510395
OCGO01000065
[OCGO] soil metagenome; soil
662
578
-
Tyr
GTA
[ENA]
¢þ
>WENV180510394
OCGO01000065
[OCGO] soil metagenome; soil
746
671
-
Thr
TGT
[ENA]
¢þ
>WENV180510387
OCGO01000036
[OCGO] soil metagenome; soil
1158
1082
-
Arg
TCT
[ENA]
¢þ
>WENV180510390
OCGO01000058
[OCGO] soil metagenome; soil
2222
2146
-
Asp
GTC
[ENA]
¢þ
>WENV180510393
OCGO01000064
[OCGO] soil metagenome; soil
2554
2479
-
Ala
GGC
[ENA]
¢þ
>WENV180510392
OCGO01000064
[OCGO] soil metagenome; soil
2669
2594
-
Ala
GGC
[ENA]
¢þ
>WENV180510388
OCGO01000057
[OCGO] soil metagenome; soil
3292
3367
+
Thr
CGT
[ENA]
¢þ
>WENV180510354
OCGO01000009
[OCGO] soil metagenome; soil
3971
3896
-
Asn
GTT
[ENA]
¢þ
>WENV180510391
OCGO01000064
[OCGO] soil metagenome; soil
5369
5444
+
Val
TAC
[ENA]
¢þ
>WENV180510353
OCGO01000009
[OCGO] soil metagenome; soil
6380
6305
-
Asn
GTT
[ENA]
¢þ
>WENV180510386
OCGO01000033
[OCGO] soil metagenome; soil
7510
7436
-
Sup
CTA
[ENA]
¢þ
>WENV180510385
OCGO01000033
[OCGO] soil metagenome; soil
7622
7548
-
Gln
CTG
[ENA]
¢þ
>WENV180510384
OCGO01000033
[OCGO] soil metagenome; soil
7746
7670
-
Met
CAT
[ENA]
¢þ
>WENV180510383
OCGO01000033
[OCGO] soil metagenome; soil
7836
7762
-
Gln
TTG
[ENA]
¢þ
>WENV180510382
OCGO01000033
[OCGO] soil metagenome; soil
7945
7871
-
Gln
TTG
[ENA]
¢þ
>WENV180510381
OCGO01000033
[OCGO] soil metagenome; soil
8053
7969
-
Leu
TAG
[ENA]
¢þ
>WENV180510347
OCGO01000009
[OCGO] soil metagenome; soil
8129
8204
+
Asn
GTT
[ENA]
¢þ
>WENV180510380
OCGO01000033
[OCGO] soil metagenome; soil
8139
8063
-
Met
CAT
[ENA]
¢þ
>WENV180510389
OCGO01000058
[OCGO] soil metagenome; soil
10225
10149
-
Asp
GTC
[ENA]
¢þ
>WENV180510356
OCGO01000010
[OCGO] soil metagenome; soil
10780
10693
-
Ser
GGA
[ENA]
¢þ
>WENV180510372
OCGO01000028
[OCGO] soil metagenome; soil
11995
12071
+
Pro
CGG
[ENA]
¢þ
>WENV180510358
OCGO01000012
[OCGO] soil metagenome; soil
19851
19776
-
Phe
GAA
[ENA]
¢þ
>WENV180510362
OCGO01000017
[OCGO] soil metagenome; soil
20800
20884
+
Tyr
GTA
[ENA]
¢þ
>WENV180510363
OCGO01000017
[OCGO] soil metagenome; soil
21094
21178
+
Tyr
GTA
[ENA]
¢þ
>WENV180510352
OCGO01000009
[OCGO] soil metagenome; soil
21682
21607
-
Asn
GTT
[ENA]
¢þ
>WENV180510348
OCGO01000009
[OCGO] soil metagenome; soil
22674
22763
+
Ser
CGA
[ENA]
¢þ
>WENV180510343
OCGO01000007
[OCGO] soil metagenome; soil
28226
28301
+
Ile2
CAT
[ENA]
¢þ
>WENV180510367
OCGO01000019
[OCGO] soil metagenome; soil
35615
35691
+
Arg
CCG
[ENA]
¢þ
>WENV180510368
OCGO01000019
[OCGO] soil metagenome; soil
35750
35825
+
His
GTG
[ENA]
¢þ
>WENV180510369
OCGO01000019
[OCGO] soil metagenome; soil
35846
35932
+
Leu
CAG
[ENA]
¢þ
>WENV180510370
OCGO01000019
[OCGO] soil metagenome; soil
35975
36051
+
Pro
TGG
[ENA]
¢þ
>WENV180510342
OCGO01000004
[OCGO] soil metagenome; soil
38186
38111
-
Gly
GCC
[ENA]
¢þ
>WENV180510341
OCGO01000004
[OCGO] soil metagenome; soil
38297
38222
-
Gly
GCC
[ENA]
¢þ
>WENV180510374
OCGO01000030
[OCGO] soil metagenome; soil
41913
41988
+
Lys
TTT
[ENA]
¢þ
>WENV180510375
OCGO01000030
[OCGO] soil metagenome; soil
42124
42199
+
Val
TAC
[ENA]
¢þ
>WENV180510376
OCGO01000030
[OCGO] soil metagenome; soil
42204
42279
+
Lys
TTT
[ENA]
¢þ
>WENV180510377
OCGO01000030
[OCGO] soil metagenome; soil
42429
42504
+
Val
TAC
[ENA]
¢þ
>WENV180510378
OCGO01000030
[OCGO] soil metagenome; soil
42509
42584
+
Lys
TTT
[ENA]
¢þ
>WENV180510379
OCGO01000030
[OCGO] soil metagenome; soil
42731
42806
+
Lys
TTT
[ENA]
¢þ
>WENV180510373
OCGO01000029
[OCGO] soil metagenome; soil
48385
48461
+
Pro
GGG
[ENA]
¢þ
>WENV180510336
OCGO01000001
[OCGO] soil metagenome; soil
54407
54332
-
Ile2
CAT
[ENA]
¢þ
>WENV180510371
OCGO01000023
[OCGO] soil metagenome; soil
61832
61916
+
Leu
CAA
[ENA]
¢þ
>WENV180510361
OCGO01000015
[OCGO] soil metagenome; soil
64179
64093
-
Leu
CAG
[ENA]
¢þ
>WENV180510360
OCGO01000015
[OCGO] soil metagenome; soil
64300
64214
-
Leu
CAG
[ENA]
¢þ
>WENV180510359
OCGO01000015
[OCGO] soil metagenome; soil
64415
64329
-
Leu
CAG
[ENA]
¢þ
>WENV180510340
OCGO01000004
[OCGO] soil metagenome; soil
68031
68106
+
Phe
GAA
[ENA]
¢þ
>WENV180510349
OCGO01000009
[OCGO] soil metagenome; soil
74114
74189
+
Gly
GCC
[ENA]
¢þ
>WENV180510350
OCGO01000009
[OCGO] soil metagenome; soil
74244
74317
+
Cys
GCA
[ENA]
¢þ
>WENV180510351
OCGO01000009
[OCGO] soil metagenome; soil
74330
74416
+
Leu
TAA
[ENA]
¢þ
>WENV180510335
OCGO01000001
[OCGO] soil metagenome; soil
86429
86353
-
Arg
ACG
[ENA]
¢þ
>WENV180510334
OCGO01000001
[OCGO] soil metagenome; soil
86704
86628
-
Arg
ACG
[ENA]
¢þ
>WENV180510333
OCGO01000001
[OCGO] soil metagenome; soil
86979
86903
-
Arg
ACG
[ENA]
¢þ
>WENV180510332
OCGO01000001
[OCGO] soil metagenome; soil
87075
86983
-
Ser
GCT
[ENA]
¢þ
>WENV180510337
OCGO01000002
[OCGO] soil metagenome; soil
94942
95018
+
Val
GAC
[ENA]
¢þ
>WENV180510338
OCGO01000002
[OCGO] soil metagenome; soil
95023
95099
+
Val
GAC
[ENA]
¢þ
>WENV180510364
OCGO01000018
[OCGO] soil metagenome; soil
102275
102362
+
Ser
GGA
[ENA]
¢þ
>WENV180510346
OCGO01000008
[OCGO] soil metagenome; soil
105280
105186
-
SeC
TCA
[ENA]
¢þ
>WENV180510355
OCGO01000010
[OCGO] soil metagenome; soil
116521
116434
-
Ser
TGA
[ENA]
¢þ
>WENV180510345
OCGO01000007
[OCGO] soil metagenome; soil
131030
130954
-
fMet
CAT
[ENA]
¢þ
>WENV180510357
OCGO01000012
[OCGO] soil metagenome; soil
131160
131233
+
Gly
CCC
[ENA]
¢þ
>WENV180510344
OCGO01000007
[OCGO] soil metagenome; soil
134899
134813
-
Leu
GAG
[ENA]
¢þ
>WENV180510339
OCGO01000003
[OCGO] soil metagenome; soil
176364
176438
+
Arg
CCT
[ENA]
¢þ
>WENV180510331
OCGO01000001
[OCGO] soil metagenome; soil
215756
215832
+
fMet
CAT
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
BACK