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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA gene List
[OCGR] soil metagenome; soil
HIT:
74 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV180510547
OCGR01000171
[OCGR] soil metagenome; soil
72
147
+
Thr
GGT
[ENA]
¢þ
>WENV180510548
OCGR01000230
[OCGR] soil metagenome; soil
78
3
-
Gly
GCC
[ENA]
¢þ
>WENV180510507
OCGR01000018
[OCGR] soil metagenome; soil
112
188
+
Asp
GTC
[ENA]
¢þ
>WENV180510545
OCGR01000134
[OCGR] soil metagenome; soil
127
202
+
Glu
TTC
[ENA]
¢þ
>WENV180510544
OCGR01000128
[OCGR] soil metagenome; soil
186
111
-
Ala
TGC
[ENA]
¢þ
>WENV180510508
OCGR01000018
[OCGR] soil metagenome; soil
197
272
+
Trp
CCA
[ENA]
¢þ
>WENV180510546
OCGR01000154
[OCGR] soil metagenome; soil
268
193
-
Lys
TTT
[ENA]
¢þ
>WENV180510543
OCGR01000128
[OCGR] soil metagenome; soil
305
229
-
Ile
GAT
[ENA]
¢þ
>WENV180510542
OCGR01000072
[OCGR] soil metagenome; soil
381
306
-
Thr
GGT
[ENA]
¢þ
>WENV180510541
OCGR01000072
[OCGR] soil metagenome; soil
461
387
-
Gly
TCC
[ENA]
¢þ
>WENV180510540
OCGR01000072
[OCGR] soil metagenome; soil
662
578
-
Tyr
GTA
[ENA]
¢þ
>WENV180510539
OCGR01000072
[OCGR] soil metagenome; soil
746
671
-
Thr
TGT
[ENA]
¢þ
>WENV180510530
OCGR01000039
[OCGR] soil metagenome; soil
1178
1102
-
Arg
TCT
[ENA]
¢þ
>WENV180510500
OCGR01000010
[OCGR] soil metagenome; soil
1421
1348
-
Gly
CCC
[ENA]
¢þ
>WENV180510506
OCGR01000016
[OCGR] soil metagenome; soil
1843
1756
-
Ser
GGA
[ENA]
¢þ
>WENV180510535
OCGR01000064
[OCGR] soil metagenome; soil
2222
2146
-
Asp
GTC
[ENA]
¢þ
>WENV180510538
OCGR01000071
[OCGR] soil metagenome; soil
2554
2479
-
Ala
GGC
[ENA]
¢þ
>WENV180510537
OCGR01000071
[OCGR] soil metagenome; soil
2669
2594
-
Ala
GGC
[ENA]
¢þ
>WENV180510516
OCGR01000032
[OCGR] soil metagenome; soil
2780
2704
-
Pro
GGG
[ENA]
¢þ
>WENV180510496
OCGR01000007
[OCGR] soil metagenome; soil
3971
3896
-
Asn
GTT
[ENA]
¢þ
>WENV180510536
OCGR01000071
[OCGR] soil metagenome; soil
5369
5444
+
Val
TAC
[ENA]
¢þ
>WENV180510488
OCGR01000006
[OCGR] soil metagenome; soil
5795
5721
-
Arg
CCT
[ENA]
¢þ
>WENV180510495
OCGR01000007
[OCGR] soil metagenome; soil
6380
6305
-
Asn
GTT
[ENA]
¢þ
>WENV180510529
OCGR01000037
[OCGR] soil metagenome; soil
7514
7440
-
Sup
CTA
[ENA]
¢þ
>WENV180510528
OCGR01000037
[OCGR] soil metagenome; soil
7626
7552
-
Gln
CTG
[ENA]
¢þ
>WENV180510533
OCGR01000062
[OCGR] soil metagenome; soil
7723
7648
-
Thr
CGT
[ENA]
¢þ
>WENV180510527
OCGR01000037
[OCGR] soil metagenome; soil
7750
7674
-
Met
CAT
[ENA]
¢þ
>WENV180510526
OCGR01000037
[OCGR] soil metagenome; soil
7840
7766
-
Gln
TTG
[ENA]
¢þ
>WENV180510525
OCGR01000037
[OCGR] soil metagenome; soil
7949
7875
-
Gln
TTG
[ENA]
¢þ
>WENV180510524
OCGR01000037
[OCGR] soil metagenome; soil
8057
7973
-
Leu
TAG
[ENA]
¢þ
>WENV180510489
OCGR01000007
[OCGR] soil metagenome; soil
8129
8204
+
Asn
GTT
[ENA]
¢þ
>WENV180510523
OCGR01000037
[OCGR] soil metagenome; soil
8143
8067
-
Met
CAT
[ENA]
¢þ
>WENV180510534
OCGR01000064
[OCGR] soil metagenome; soil
10225
10149
-
Asp
GTC
[ENA]
¢þ
>WENV180510498
OCGR01000008
[OCGR] soil metagenome; soil
10763
10676
-
Ser
GGA
[ENA]
¢þ
>WENV180510515
OCGR01000031
[OCGR] soil metagenome; soil
11995
12071
+
Pro
CGG
[ENA]
¢þ
>WENV180510532
OCGR01000041
[OCGR] soil metagenome; soil
16533
16449
-
Tyr
GTA
[ENA]
¢þ
>WENV180510531
OCGR01000041
[OCGR] soil metagenome; soil
16827
16743
-
Tyr
GTA
[ENA]
¢þ
>WENV180510494
OCGR01000007
[OCGR] soil metagenome; soil
21682
21607
-
Asn
GTT
[ENA]
¢þ
>WENV180510490
OCGR01000007
[OCGR] soil metagenome; soil
22674
22763
+
Ser
CGA
[ENA]
¢þ
>WENV180510483
OCGR01000001
[OCGR] soil metagenome; soil
26997
26922
-
Ile2
CAT
[ENA]
¢þ
>WENV180510484
OCGR01000004
[OCGR] soil metagenome; soil
28226
28301
+
Ile2
CAT
[ENA]
¢þ
>WENV180510513
OCGR01000020
[OCGR] soil metagenome; soil
29789
29864
+
Phe
GAA
[ENA]
¢þ
>WENV180510509
OCGR01000018
[OCGR] soil metagenome; soil
35615
35691
+
Arg
CCG
[ENA]
¢þ
>WENV180510510
OCGR01000018
[OCGR] soil metagenome; soil
35750
35825
+
His
GTG
[ENA]
¢þ
>WENV180510511
OCGR01000018
[OCGR] soil metagenome; soil
35846
35932
+
Leu
CAG
[ENA]
¢þ
>WENV180510512
OCGR01000018
[OCGR] soil metagenome; soil
35975
36051
+
Pro
TGG
[ENA]
¢þ
>WENV180510517
OCGR01000033
[OCGR] soil metagenome; soil
41913
41988
+
Lys
TTT
[ENA]
¢þ
>WENV180510518
OCGR01000033
[OCGR] soil metagenome; soil
42124
42199
+
Val
TAC
[ENA]
¢þ
>WENV180510519
OCGR01000033
[OCGR] soil metagenome; soil
42204
42279
+
Lys
TTT
[ENA]
¢þ
>WENV180510520
OCGR01000033
[OCGR] soil metagenome; soil
42429
42504
+
Val
TAC
[ENA]
¢þ
>WENV180510521
OCGR01000033
[OCGR] soil metagenome; soil
42509
42584
+
Lys
TTT
[ENA]
¢þ
>WENV180510522
OCGR01000033
[OCGR] soil metagenome; soil
42731
42806
+
Lys
TTT
[ENA]
¢þ
>WENV180510482
OCGR01000001
[OCGR] soil metagenome; soil
59019
58943
-
Arg
ACG
[ENA]
¢þ
>WENV180510481
OCGR01000001
[OCGR] soil metagenome; soil
59294
59218
-
Arg
ACG
[ENA]
¢þ
>WENV180510480
OCGR01000001
[OCGR] soil metagenome; soil
59433
59357
-
Arg
ACG
[ENA]
¢þ
>WENV180510479
OCGR01000001
[OCGR] soil metagenome; soil
59708
59632
-
Arg
ACG
[ENA]
¢þ
>WENV180510478
OCGR01000001
[OCGR] soil metagenome; soil
59804
59712
-
Ser
GCT
[ENA]
¢þ
>WENV180510514
OCGR01000025
[OCGR] soil metagenome; soil
61832
61916
+
Leu
CAA
[ENA]
¢þ
>WENV180510505
OCGR01000014
[OCGR] soil metagenome; soil
64179
64093
-
Leu
CAG
[ENA]
¢þ
>WENV180510504
OCGR01000014
[OCGR] soil metagenome; soil
64300
64214
-
Leu
CAG
[ENA]
¢þ
>WENV180510503
OCGR01000014
[OCGR] soil metagenome; soil
64415
64329
-
Leu
CAG
[ENA]
¢þ
>WENV180510491
OCGR01000007
[OCGR] soil metagenome; soil
74114
74189
+
Gly
GCC
[ENA]
¢þ
>WENV180510492
OCGR01000007
[OCGR] soil metagenome; soil
74244
74317
+
Cys
GCA
[ENA]
¢þ
>WENV180510493
OCGR01000007
[OCGR] soil metagenome; soil
74330
74416
+
Leu
TAA
[ENA]
¢þ
>WENV180510501
OCGR01000011
[OCGR] soil metagenome; soil
94846
94922
+
Val
GAC
[ENA]
¢þ
>WENV180510502
OCGR01000011
[OCGR] soil metagenome; soil
94927
95003
+
Val
GAC
[ENA]
¢þ
>WENV180510487
OCGR01000005
[OCGR] soil metagenome; soil
105280
105186
-
SeC
TCA
[ENA]
¢þ
>WENV180510499
OCGR01000010
[OCGR] soil metagenome; soil
112730
112805
+
Phe
GAA
[ENA]
¢þ
>WENV180510497
OCGR01000008
[OCGR] soil metagenome; soil
116504
116417
-
Ser
TGA
[ENA]
¢þ
>WENV180510486
OCGR01000004
[OCGR] soil metagenome; soil
130804
130728
-
fMet
CAT
[ENA]
¢þ
>WENV180510485
OCGR01000004
[OCGR] soil metagenome; soil
134673
134587
-
Leu
GAG
[ENA]
¢þ
>WENV180510475
OCGR01000001
[OCGR] soil metagenome; soil
188485
188561
+
fMet
CAT
[ENA]
¢þ
>WENV180510476
OCGR01000001
[OCGR] soil metagenome; soil
188595
188671
+
fMet
CAT
[ENA]
¢þ
>WENV180510477
OCGR01000001
[OCGR] soil metagenome; soil
188705
188781
+
fMet
CAT
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
BACK