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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA gene List
[OCGW] soil metagenome; soil
HIT:
63 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV180510801
OCGW01000129
[OCGW] soil metagenome; soil
3
89
+
Leu
CAG
[ENA]
¢þ
>WENV180510810
OCGW01000218
[OCGW] soil metagenome; soil
6
81
+
Asn
GTT
[ENA]
¢þ
>WENV180510788
OCGW01000070
[OCGW] soil metagenome; soil
57
132
+
Lys
TTT
[ENA]
¢þ
>WENV180510815
OCGW01000306
[OCGW] soil metagenome; soil
62
137
+
Thr
GGT
[ENA]
¢þ
>WENV180510763
OCGW01000011
[OCGW] soil metagenome; soil
76
1
-
Phe
GAA
[ENA]
¢þ
>WENV180510818
OCGW01000338
[OCGW] soil metagenome; soil
79
4
-
Val
TAC
[ENA]
¢þ
>WENV180510817
OCGW01000328
[OCGW] soil metagenome; soil
92
18
-
Gln
TTG
[ENA]
¢þ
>WENV180510781
OCGW01000041
[OCGW] soil metagenome; soil
95
171
+
Arg
ACG
[ENA]
¢þ
>WENV180510802
OCGW01000129
[OCGW] soil metagenome; soil
132
208
+
Pro
TGG
[ENA]
¢þ
>WENV180510776
OCGW01000029
[OCGW] soil metagenome; soil
149
74
-
His
GTG
[ENA]
¢þ
>WENV180510816
OCGW01000312
[OCGW] soil metagenome; soil
161
77
-
Leu
TAG
[ENA]
¢þ
>WENV180510814
OCGW01000283
[OCGW] soil metagenome; soil
175
89
-
Leu
CAG
[ENA]
¢þ
>WENV180510812
OCGW01000249
[OCGW] soil metagenome; soil
192
117
-
Ala
TGC
[ENA]
¢þ
>WENV180510813
OCGW01000251
[OCGW] soil metagenome; soil
213
288
+
Glu
TTC
[ENA]
¢þ
>WENV180510775
OCGW01000029
[OCGW] soil metagenome; soil
284
208
-
Arg
CCG
[ENA]
¢þ
>WENV180510811
OCGW01000249
[OCGW] soil metagenome; soil
311
235
-
Ile
GAT
[ENA]
¢þ
>WENV180510809
OCGW01000168
[OCGW] soil metagenome; soil
375
300
-
Thr
GGT
[ENA]
¢þ
>WENV180510808
OCGW01000168
[OCGW] soil metagenome; soil
455
381
-
Gly
TCC
[ENA]
¢þ
>WENV180510807
OCGW01000168
[OCGW] soil metagenome; soil
656
572
-
Tyr
GTA
[ENA]
¢þ
>WENV180510806
OCGW01000168
[OCGW] soil metagenome; soil
740
665
-
Thr
TGT
[ENA]
¢þ
>WENV180510789
OCGW01000073
[OCGW] soil metagenome; soil
1421
1348
-
Gly
CCC
[ENA]
¢þ
>WENV180510805
OCGW01000165
[OCGW] soil metagenome; soil
1568
1493
-
Ala
GGC
[ENA]
¢þ
>WENV180510803
OCGW01000134
[OCGW] soil metagenome; soil
1590
1665
+
Asn
GTT
[ENA]
¢þ
>WENV180510764
OCGW01000014
[OCGW] soil metagenome; soil
1831
1747
-
Leu
CAA
[ENA]
¢þ
>WENV180510786
OCGW01000053
[OCGW] soil metagenome; soil
2763
2687
-
Pro
GGG
[ENA]
¢þ
>WENV180510804
OCGW01000134
[OCGW] soil metagenome; soil
3999
4074
+
Asn
GTT
[ENA]
¢þ
>WENV180510800
OCGW01000115
[OCGW] soil metagenome; soil
7251
7176
-
Thr
CGT
[ENA]
¢þ
>WENV180510799
OCGW01000113
[OCGW] soil metagenome; soil
8803
8890
+
Ser
GGA
[ENA]
¢þ
>WENV180510796
OCGW01000107
[OCGW] soil metagenome; soil
10758
10834
+
Met
CAT
[ENA]
¢þ
>WENV180510787
OCGW01000057
[OCGW] soil metagenome; soil
10780
10693
-
Ser
GGA
[ENA]
¢þ
>WENV180510797
OCGW01000107
[OCGW] soil metagenome; soil
10882
10956
+
Gln
CTG
[ENA]
¢þ
>WENV180510798
OCGW01000107
[OCGW] soil metagenome; soil
10994
11068
+
Sup
CTA
[ENA]
¢þ
>WENV180510783
OCGW01000052
[OCGW] soil metagenome; soil
11449
11524
+
Gly
GCC
[ENA]
¢þ
>WENV180510784
OCGW01000052
[OCGW] soil metagenome; soil
11579
11652
+
Cys
GCA
[ENA]
¢þ
>WENV180510785
OCGW01000052
[OCGW] soil metagenome; soil
11665
11751
+
Leu
TAA
[ENA]
¢þ
>WENV180510795
OCGW01000106
[OCGW] soil metagenome; soil
12343
12427
+
Tyr
GTA
[ENA]
¢þ
>WENV180510791
OCGW01000085
[OCGW] soil metagenome; soil
13475
13386
-
Ser
CGA
[ENA]
¢þ
>WENV180510790
OCGW01000085
[OCGW] soil metagenome; soil
14467
14542
+
Asn
GTT
[ENA]
¢þ
>WENV180510771
OCGW01000028
[OCGW] soil metagenome; soil
15746
15671
-
Ile2
CAT
[ENA]
¢þ
>WENV180510794
OCGW01000086
[OCGW] soil metagenome; soil
17163
17088
-
Lys
TTT
[ENA]
¢þ
>WENV180510793
OCGW01000086
[OCGW] soil metagenome; soil
17371
17296
-
Lys
TTT
[ENA]
¢þ
>WENV180510792
OCGW01000086
[OCGW] soil metagenome; soil
17593
17518
-
Lys
TTT
[ENA]
¢þ
>WENV180510769
OCGW01000022
[OCGW] soil metagenome; soil
18031
17955
-
Val
GAC
[ENA]
¢þ
>WENV180510768
OCGW01000022
[OCGW] soil metagenome; soil
18112
18036
-
Val
GAC
[ENA]
¢þ
>WENV180510761
OCGW01000011
[OCGW] soil metagenome; soil
29810
29885
+
Gly
GCC
[ENA]
¢þ
>WENV180510762
OCGW01000011
[OCGW] soil metagenome; soil
29921
29996
+
Gly
GCC
[ENA]
¢þ
>WENV180510782
OCGW01000041
[OCGW] soil metagenome; soil
32117
32192
+
Ile2
CAT
[ENA]
¢þ
>WENV180510765
OCGW01000016
[OCGW] soil metagenome; soil
33001
33087
+
Leu
GAG
[ENA]
¢þ
>WENV180510774
OCGW01000029
[OCGW] soil metagenome; soil
35702
35627
-
Trp
CCA
[ENA]
¢þ
>WENV180510773
OCGW01000029
[OCGW] soil metagenome; soil
35787
35711
-
Asp
GTC
[ENA]
¢þ
>WENV180510766
OCGW01000016
[OCGW] soil metagenome; soil
36870
36946
+
fMet
CAT
[ENA]
¢þ
>WENV180510780
OCGW01000033
[OCGW] soil metagenome; soil
41082
41158
+
Arg
TCT
[ENA]
¢þ
>WENV180510777
OCGW01000032
[OCGW] soil metagenome; soil
41815
41890
+
Lys
TTT
[ENA]
¢þ
>WENV180510778
OCGW01000032
[OCGW] soil metagenome; soil
42026
42101
+
Val
TAC
[ENA]
¢þ
>WENV180510779
OCGW01000032
[OCGW] soil metagenome; soil
42106
42181
+
Lys
TTT
[ENA]
¢þ
>WENV180510770
OCGW01000024
[OCGW] soil metagenome; soil
43275
43351
+
Pro
CGG
[ENA]
¢þ
>WENV180510772
OCGW01000029
[OCGW] soil metagenome; soil
43790
43714
-
Asp
GTC
[ENA]
¢þ
>WENV180510767
OCGW01000021
[OCGW] soil metagenome; soil
51497
51589
+
Ser
GCT
[ENA]
¢þ
>WENV180510756
OCGW01000001
[OCGW] soil metagenome; soil
54319
54413
+
SeC
TCA
[ENA]
¢þ
>WENV180510760
OCGW01000009
[OCGW] soil metagenome; soil
59803
59878
+
Phe
GAA
[ENA]
¢þ
>WENV180510757
OCGW01000002
[OCGW] soil metagenome; soil
77204
77280
+
fMet
CAT
[ENA]
¢þ
>WENV180510758
OCGW01000002
[OCGW] soil metagenome; soil
77314
77390
+
fMet
CAT
[ENA]
¢þ
>WENV180510759
OCGW01000007
[OCGW] soil metagenome; soil
79196
79270
+
Arg
CCT
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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