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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA gene List
[OCLN] human gut metagenome; human gut
HIT:
143 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV180568674
OCLN01000016
[OCLN] human gut metagenome; human gut
1
74
+
Lys
TTT
[ENA]
¢þ
>WENV180568778
OCLN01022860
[OCLN] human gut metagenome; human gut
3
76
+
His
GTG
[ENA]
¢þ
>WENV180568770
OCLN01021155
[OCLN] human gut metagenome; human gut
32
104
+
Gly
TCC
[ENA]
¢þ
>WENV180568773
OCLN01022399
[OCLN] human gut metagenome; human gut
33
106
+
Cys
GCA
[ENA]
¢þ
>WENV180568723
OCLN01000444
[OCLN] human gut metagenome; human gut
56
130
+
Gln
TTG
[ENA]
¢þ
>WENV180568771
OCLN01022387
[OCLN] human gut metagenome; human gut
64
145
+
Leu
TAG
[ENA]
¢þ
>WENV180568746
OCLN01002206
[OCLN] human gut metagenome; human gut
67
141
+
Ala
TGC
[ENA]
¢þ
>WENV180568743
OCLN01001178
[OCLN] human gut metagenome; human gut
68
140
+
Ala
TGC
[ENA]
¢þ
>WENV180568738
OCLN01000657
[OCLN] human gut metagenome; human gut
71
141
+
Ala
TGC
[ENA]
¢þ
>WENV180568779
OCLN01022905
[OCLN] human gut metagenome; human gut
72
1
-
Gln
TTG
[ENA]
¢þ
>WENV180568756
OCLN01003191
[OCLN] human gut metagenome; human gut
73
1
-
Val
GAC
[ENA]
¢þ
>WENV180568772
OCLN01022389
[OCLN] human gut metagenome; human gut
74
1
-
Ala
GGC
[ENA]
¢þ
>WENV180568776
OCLN01022475
[OCLN] human gut metagenome; human gut
77
2
-
Asn
GTT
[ENA]
¢þ
>WENV180568775
OCLN01022443
[OCLN] human gut metagenome; human gut
79
3
-
Ile
GAT
[ENA]
¢þ
>WENV180568777
OCLN01022781
[OCLN] human gut metagenome; human gut
85
2
-
Tyr
GTA
[ENA]
¢þ
>WENV180568768
OCLN01019527
[OCLN] human gut metagenome; human gut
95
168
+
Val
CAC
[ENA]
¢þ
>WENV180568744
OCLN01002056
[OCLN] human gut metagenome; human gut
96
179
+
Leu
CAA
[ENA]
¢þ
>WENV180568637
OCLN01000001
[OCLN] human gut metagenome; human gut
96
186
+
Ser
GGA
[ENA]
¢þ
>WENV180568763
OCLN01009043
[OCLN] human gut metagenome; human gut
101
16
-
Ile
AAT
[ENA]
¢þ
>WENV180568753
OCLN01003118
[OCLN] human gut metagenome; human gut
110
36
-
Lys
CTT
[ENA]
¢þ
>WENV180568762
OCLN01008390
[OCLN] human gut metagenome; human gut
112
18
-
Arg
ACG
[ENA]
¢þ
>WENV180568767
OCLN01012088
[OCLN] human gut metagenome; human gut
113
39
-
Lys
TTT
[ENA]
¢þ
>WENV180568765
OCLN01009953
[OCLN] human gut metagenome; human gut
116
33
-
Ser
AGA
[ENA]
¢þ
>WENV180568774
OCLN01022403
[OCLN] human gut metagenome; human gut
129
56
-
Trp
CCA
[ENA]
¢þ
>WENV180568724
OCLN01000444
[OCLN] human gut metagenome; human gut
134
207
+
Lys
TTT
[ENA]
¢þ
>WENV180568734
OCLN01000583
[OCLN] human gut metagenome; human gut
137
222
+
Ser
GGA
[ENA]
¢þ
>WENV180568691
OCLN01000036
[OCLN] human gut metagenome; human gut
144
69
-
Asp
GTC
[ENA]
¢þ
>WENV180568755
OCLN01003191
[OCLN] human gut metagenome; human gut
145
74
-
Cys
GCA
[ENA]
¢þ
>WENV180568761
OCLN01005876
[OCLN] human gut metagenome; human gut
153
62
-
Ser
TGA
[ENA]
¢þ
>WENV180568769
OCLN01019796
[OCLN] human gut metagenome; human gut
162
90
-
Gly
GCC
[ENA]
¢þ
>WENV180568747
OCLN01002206
[OCLN] human gut metagenome; human gut
163
238
+
Met
CAT
[ENA]
¢þ
>WENV180568741
OCLN01000988
[OCLN] human gut metagenome; human gut
170
99
-
Ile2
CAT
[ENA]
¢þ
>WENV180568764
OCLN01009898
[OCLN] human gut metagenome; human gut
194
268
+
Ala
AGC
[ENA]
¢þ
>WENV180568638
OCLN01000001
[OCLN] human gut metagenome; human gut
202
275
+
Glu
TTC
[ENA]
¢þ
>WENV180568766
OCLN01011368
[OCLN] human gut metagenome; human gut
212
286
+
Val
CAC
[ENA]
¢þ
>WENV180568758
OCLN01005055
[OCLN] human gut metagenome; human gut
224
296
+
Gln
CTG
[ENA]
¢þ
>WENV180568690
OCLN01000036
[OCLN] human gut metagenome; human gut
232
159
-
fMet
CAT
[ENA]
¢þ
>WENV180568760
OCLN01005876
[OCLN] human gut metagenome; human gut
235
162
-
Ile2
CAT
[ENA]
¢þ
>WENV180568754
OCLN01003191
[OCLN] human gut metagenome; human gut
246
173
-
Gly
GCC
[ENA]
¢þ
>WENV180568748
OCLN01002206
[OCLN] human gut metagenome; human gut
257
332
+
Ile2
CAT
[ENA]
¢þ
>WENV180568639
OCLN01000001
[OCLN] human gut metagenome; human gut
301
375
+
Val
TAC
[ENA]
¢þ
>WENV180568759
OCLN01005876
[OCLN] human gut metagenome; human gut
336
262
-
Met
CAT
[ENA]
¢þ
>WENV180568742
OCLN01001151
[OCLN] human gut metagenome; human gut
346
421
+
Arg
TCT
[ENA]
¢þ
>WENV180568757
OCLN01004256
[OCLN] human gut metagenome; human gut
351
276
-
Arg
TCT
[ENA]
¢þ
>WENV180568740
OCLN01000784
[OCLN] human gut metagenome; human gut
352
279
-
Arg
CCG
[ENA]
¢þ
>WENV180568749
OCLN01002206
[OCLN] human gut metagenome; human gut
365
454
+
Ser
TGA
[ENA]
¢þ
>WENV180568737
OCLN01000647
[OCLN] human gut metagenome; human gut
380
308
-
Thr
TGT
[ENA]
¢þ
>WENV180568640
OCLN01000001
[OCLN] human gut metagenome; human gut
385
460
+
Asp
GTC
[ENA]
¢þ
>WENV180568732
OCLN01000534
[OCLN] human gut metagenome; human gut
471
399
-
Ile
GAT
[ENA]
¢þ
>WENV180568752
OCLN01002569
[OCLN] human gut metagenome; human gut
482
397
-
Ser
TGA
[ENA]
¢þ
>WENV180568750
OCLN01002206
[OCLN] human gut metagenome; human gut
487
562
+
fMet
CAT
[ENA]
¢þ
>WENV180568641
OCLN01000001
[OCLN] human gut metagenome; human gut
506
578
+
Phe
GAA
[ENA]
¢þ
>WENV180568718
OCLN01000372
[OCLN] human gut metagenome; human gut
510
436
-
Ala
CGC
[ENA]
¢þ
>WENV180568733
OCLN01000539
[OCLN] human gut metagenome; human gut
572
645
+
Ala
TGC
[ENA]
¢þ
>WENV180568642
OCLN01000001
[OCLN] human gut metagenome; human gut
583
665
+
Tyr
GTA
[ENA]
¢þ
>WENV180568751
OCLN01002206
[OCLN] human gut metagenome; human gut
600
676
+
Asp
GTC
[ENA]
¢þ
>WENV180568654
OCLN01000003
[OCLN] human gut metagenome; human gut
611
685
+
Val
TAC
[ENA]
¢þ
>WENV180568736
OCLN01000647
[OCLN] human gut metagenome; human gut
635
554
-
Leu
TAA
[ENA]
¢þ
>WENV180568745
OCLN01002160
[OCLN] human gut metagenome; human gut
640
568
-
Thr
AGT
[ENA]
¢þ
>WENV180568643
OCLN01000001
[OCLN] human gut metagenome; human gut
669
742
+
Trp
CCA
[ENA]
¢þ
>WENV180568655
OCLN01000003
[OCLN] human gut metagenome; human gut
690
764
+
Lys
TTT
[ENA]
¢þ
>WENV180568709
OCLN01000229
[OCLN] human gut metagenome; human gut
753
829
+
Pro
CGG
[ENA]
¢þ
>WENV180568644
OCLN01000001
[OCLN] human gut metagenome; human gut
779
852
+
His
GTG
[ENA]
¢þ
>WENV180568656
OCLN01000003
[OCLN] human gut metagenome; human gut
779
862
+
Leu
TAG
[ENA]
¢þ
>WENV180568645
OCLN01000001
[OCLN] human gut metagenome; human gut
865
938
+
Gln
TTG
[ENA]
¢þ
>WENV180568657
OCLN01000003
[OCLN] human gut metagenome; human gut
868
943
+
Thr
TGT
[ENA]
¢þ
>WENV180568727
OCLN01000530
[OCLN] human gut metagenome; human gut
875
945
+
Arg
TCT
[ENA]
¢þ
>WENV180568739
OCLN01000657
[OCLN] human gut metagenome; human gut
901
971
+
Asn
GTT
[ENA]
¢þ
>WENV180568658
OCLN01000003
[OCLN] human gut metagenome; human gut
948
1019
+
Gly
GCC
[ENA]
¢þ
>WENV180568646
OCLN01000001
[OCLN] human gut metagenome; human gut
963
1033
+
Cys
GCA
[ENA]
¢þ
>WENV180568711
OCLN01000242
[OCLN] human gut metagenome; human gut
1031
947
-
Leu
CAA
[ENA]
¢þ
>WENV180568659
OCLN01000003
[OCLN] human gut metagenome; human gut
1035
1120
+
Leu
TAA
[ENA]
¢þ
>WENV180568728
OCLN01000530
[OCLN] human gut metagenome; human gut
1036
1110
+
Sup
TCA
[ENA]
¢þ
>WENV180568647
OCLN01000001
[OCLN] human gut metagenome; human gut
1046
1131
+
Leu
CAA
[ENA]
¢þ
>WENV180568719
OCLN01000374
[OCLN] human gut metagenome; human gut
1084
1011
-
Trp
CCA
[ENA]
¢þ
>WENV180568729
OCLN01000530
[OCLN] human gut metagenome; human gut
1108
1178
+
Phe
GAA
[ENA]
¢þ
>WENV180568722
OCLN01000417
[OCLN] human gut metagenome; human gut
1128
1202
+
Leu
TAA
[ENA]
¢þ
>WENV180568660
OCLN01000003
[OCLN] human gut metagenome; human gut
1135
1208
+
Arg
ACG
[ENA]
¢þ
>WENV180568661
OCLN01000003
[OCLN] human gut metagenome; human gut
1220
1293
+
Pro
TGG
[ENA]
¢þ
>WENV180568735
OCLN01000647
[OCLN] human gut metagenome; human gut
1310
1384
+
Lys
TTT
[ENA]
¢þ
>WENV180568671
OCLN01000007
[OCLN] human gut metagenome; human gut
1484
1410
-
Lys
CTT
[ENA]
¢þ
>WENV180568731
OCLN01000534
[OCLN] human gut metagenome; human gut
1679
1605
-
Pro
TGG
[ENA]
¢þ
>WENV180568721
OCLN01000395
[OCLN] human gut metagenome; human gut
1821
1907
+
Leu
GAG
[ENA]
¢þ
>WENV180568730
OCLN01000534
[OCLN] human gut metagenome; human gut
1913
1841
-
Gly
TCC
[ENA]
¢þ
>WENV180568714
OCLN01000341
[OCLN] human gut metagenome; human gut
2055
1984
-
Asp
GTC
[ENA]
¢þ
>WENV180568715
OCLN01000358
[OCLN] human gut metagenome; human gut
2151
2065
-
Ser
CGA
[ENA]
¢þ
>WENV180568698
OCLN01000079
[OCLN] human gut metagenome; human gut
2374
2445
+
Gly
CCC
[ENA]
¢þ
>WENV180568716
OCLN01000362
[OCLN] human gut metagenome; human gut
2378
2303
-
His
GTG
[ENA]
¢þ
>WENV180568726
OCLN01000500
[OCLN] human gut metagenome; human gut
2840
2916
+
Ile
GAT
[ENA]
¢þ
>WENV180568725
OCLN01000469
[OCLN] human gut metagenome; human gut
2865
2948
+
Leu
CAG
[ENA]
¢þ
>WENV180568720
OCLN01000384
[OCLN] human gut metagenome; human gut
2886
2810
-
fMet
CAT
[ENA]
¢þ
>WENV180568717
OCLN01000371
[OCLN] human gut metagenome; human gut
3106
3180
+
Pro
GGG
[ENA]
¢þ
>WENV180568710
OCLN01000230
[OCLN] human gut metagenome; human gut
3361
3287
-
Arg
CCT
[ENA]
¢þ
>WENV180568708
OCLN01000203
[OCLN] human gut metagenome; human gut
3949
3874
-
Thr
TGT
[ENA]
¢þ
>WENV180568703
OCLN01000134
[OCLN] human gut metagenome; human gut
3964
4038
+
Ile2
CAT
[ENA]
¢þ
>WENV180568702
OCLN01000096
[OCLN] human gut metagenome; human gut
3999
4072
+
Thr
CGT
[ENA]
¢þ
>WENV180568713
OCLN01000256
[OCLN] human gut metagenome; human gut
4823
4750
-
Arg
ACG
[ENA]
¢þ
>WENV180568712
OCLN01000256
[OCLN] human gut metagenome; human gut
5122
5032
-
Ser
GCT
[ENA]
¢þ
>WENV180568705
OCLN01000166
[OCLN] human gut metagenome; human gut
5363
5444
+
Tyr
GTA
[ENA]
¢þ
>WENV180568706
OCLN01000166
[OCLN] human gut metagenome; human gut
5649
5722
+
Thr
GGT
[ENA]
¢þ
>WENV180568701
OCLN01000089
[OCLN] human gut metagenome; human gut
5705
5622
-
Leu
TAG
[ENA]
¢þ
>WENV180568707
OCLN01000166
[OCLN] human gut metagenome; human gut
5785
5859
+
Met
CAT
[ENA]
¢þ
>WENV180568704
OCLN01000164
[OCLN] human gut metagenome; human gut
6018
5939
-
Gln
TTG
[ENA]
¢þ
>WENV180568681
OCLN01000027
[OCLN] human gut metagenome; human gut
7294
7202
-
Ser
TGA
[ENA]
¢þ
>WENV180568697
OCLN01000064
[OCLN] human gut metagenome; human gut
7882
7805
-
Phe
GAA
[ENA]
¢þ
>WENV180568696
OCLN01000064
[OCLN] human gut metagenome; human gut
8016
7942
-
Asp
GTC
[ENA]
¢þ
>WENV180568695
OCLN01000064
[OCLN] human gut metagenome; human gut
8451
8378
-
Glu
TTC
[ENA]
¢þ
>WENV180568692
OCLN01000046
[OCLN] human gut metagenome; human gut
8500
8425
-
Val
TAC
[ENA]
¢þ
>WENV180568699
OCLN01000081
[OCLN] human gut metagenome; human gut
8846
8920
+
Pro
TGG
[ENA]
¢þ
>WENV180568700
OCLN01000081
[OCLN] human gut metagenome; human gut
9775
9846
+
Gly
TCC
[ENA]
¢þ
>WENV180568694
OCLN01000064
[OCLN] human gut metagenome; human gut
10267
10341
+
Lys
TTT
[ENA]
¢þ
>WENV180568693
OCLN01000061
[OCLN] human gut metagenome; human gut
14693
14603
-
Ser
GGA
[ENA]
¢þ
>WENV180568651
OCLN01000002
[OCLN] human gut metagenome; human gut
34263
34352
+
Ser
CGA
[ENA]
¢þ
>WENV180568673
OCLN01000013
[OCLN] human gut metagenome; human gut
35218
35289
+
Arg
CCG
[ENA]
¢þ
>WENV180568665
OCLN01000005
[OCLN] human gut metagenome; human gut
36993
36918
-
Arg
CCT
[ENA]
¢þ
>WENV180568682
OCLN01000028
[OCLN] human gut metagenome; human gut
38936
39011
+
Val
TAC
[ENA]
¢þ
>WENV180568683
OCLN01000028
[OCLN] human gut metagenome; human gut
39018
39093
+
Thr
TGT
[ENA]
¢þ
>WENV180568684
OCLN01000028
[OCLN] human gut metagenome; human gut
39099
39173
+
Lys
TTT
[ENA]
¢þ
>WENV180568685
OCLN01000028
[OCLN] human gut metagenome; human gut
39191
39265
+
Gly
GCC
[ENA]
¢þ
>WENV180568686
OCLN01000028
[OCLN] human gut metagenome; human gut
39277
39365
+
Leu
TAA
[ENA]
¢þ
>WENV180568687
OCLN01000028
[OCLN] human gut metagenome; human gut
39378
39454
+
Arg
ACG
[ENA]
¢þ
>WENV180568688
OCLN01000028
[OCLN] human gut metagenome; human gut
39478
39551
+
Pro
TGG
[ENA]
¢þ
>WENV180568689
OCLN01000028
[OCLN] human gut metagenome; human gut
39565
39640
+
Ala
TGC
[ENA]
¢þ
>WENV180568679
OCLN01000026
[OCLN] human gut metagenome; human gut
40376
40450
+
Asn
GTT
[ENA]
¢þ
>WENV180568680
OCLN01000026
[OCLN] human gut metagenome; human gut
40453
40543
+
Ser
GCT
[ENA]
¢þ
>WENV180568677
OCLN01000019
[OCLN] human gut metagenome; human gut
46938
47012
+
Glu
TTC
[ENA]
¢þ
>WENV180568678
OCLN01000019
[OCLN] human gut metagenome; human gut
47018
47090
+
Asp
GTC
[ENA]
¢þ
>WENV180568672
OCLN01000011
[OCLN] human gut metagenome; human gut
63048
63122
+
Arg
TCT
[ENA]
¢þ
>WENV180568675
OCLN01000016
[OCLN] human gut metagenome; human gut
82116
82202
+
Leu
GAG
[ENA]
¢þ
>WENV180568676
OCLN01000016
[OCLN] human gut metagenome; human gut
82225
82298
+
Gly
TCC
[ENA]
¢þ
>WENV180568663
OCLN01000005
[OCLN] human gut metagenome; human gut
87750
87825
+
Arg
TCT
[ENA]
¢þ
>WENV180568670
OCLN01000007
[OCLN] human gut metagenome; human gut
120806
120733
-
Ile2
CAT
[ENA]
¢þ
>WENV180568669
OCLN01000007
[OCLN] human gut metagenome; human gut
193183
193110
-
Glu
TTC
[ENA]
¢þ
>WENV180568668
OCLN01000007
[OCLN] human gut metagenome; human gut
193286
193197
-
Ser
GCT
[ENA]
¢þ
>WENV180568667
OCLN01000007
[OCLN] human gut metagenome; human gut
193370
193295
-
Ile
GAT
[ENA]
¢þ
>WENV180568666
OCLN01000007
[OCLN] human gut metagenome; human gut
193449
193379
-
Gly
TCC
[ENA]
¢þ
>WENV180568662
OCLN01000004
[OCLN] human gut metagenome; human gut
217787
217712
-
Ile2
CAT
[ENA]
¢þ
>WENV180568648
OCLN01000001
[OCLN] human gut metagenome; human gut
254358
254444
+
Leu
GAG
[ENA]
¢þ
>WENV180568649
OCLN01000001
[OCLN] human gut metagenome; human gut
265691
265773
+
Tyr
GTA
[ENA]
¢þ
>WENV180568650
OCLN01000001
[OCLN] human gut metagenome; human gut
265781
265854
+
Gln
TTG
[ENA]
¢þ
>WENV180568652
OCLN01000002
[OCLN] human gut metagenome; human gut
272944
273016
+
Thr
CGT
[ENA]
¢þ
>WENV180568664
OCLN01000005
[OCLN] human gut metagenome; human gut
279528
279601
+
Arg
CCG
[ENA]
¢þ
>WENV180568653
OCLN01000002
[OCLN] human gut metagenome; human gut
559522
559450
-
Thr
GGT
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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