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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA gene List
[OCQJ] human gut metagenome; human gut
HIT:
123 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV180625066
OCQJ01000005
[OCQJ] human gut metagenome; human gut
1
74
+
Pro
TGG
[ENA]
¢þ
>WENV180625164
OCQJ01004430
[OCQJ] human gut metagenome; human gut
3
76
+
His
GTG
[ENA]
¢þ
>WENV180625045
OCQJ01000002
[OCQJ] human gut metagenome; human gut
5
79
+
Val
TAC
[ENA]
¢þ
>WENV180625153
OCQJ01000936
[OCQJ] human gut metagenome; human gut
21
91
+
Arg
TCT
[ENA]
¢þ
>WENV180625141
OCQJ01000112
[OCQJ] human gut metagenome; human gut
45
135
+
Ser
GCT
[ENA]
¢þ
>WENV180625148
OCQJ01000305
[OCQJ] human gut metagenome; human gut
75
2
-
Arg
ACG
[ENA]
¢þ
>WENV180625162
OCQJ01004187
[OCQJ] human gut metagenome; human gut
77
2
-
Asn
GTT
[ENA]
¢þ
>WENV180625161
OCQJ01004161
[OCQJ] human gut metagenome; human gut
79
3
-
Ile
GAT
[ENA]
¢þ
>WENV180625163
OCQJ01004413
[OCQJ] human gut metagenome; human gut
79
6
-
Gly
TCC
[ENA]
¢þ
>WENV180625046
OCQJ01000002
[OCQJ] human gut metagenome; human gut
89
164
+
Asp
GTC
[ENA]
¢þ
>WENV180625154
OCQJ01000936
[OCQJ] human gut metagenome; human gut
110
180
+
Val
TAC
[ENA]
¢þ
>WENV180625160
OCQJ01004138
[OCQJ] human gut metagenome; human gut
129
56
-
Trp
CCA
[ENA]
¢þ
>WENV180625159
OCQJ01004067
[OCQJ] human gut metagenome; human gut
141
59
-
Leu
TAG
[ENA]
¢þ
>WENV180625133
OCQJ01000049
[OCQJ] human gut metagenome; human gut
144
69
-
Asp
GTC
[ENA]
¢þ
>WENV180625151
OCQJ01000516
[OCQJ] human gut metagenome; human gut
153
62
-
Ser
TGA
[ENA]
¢þ
>WENV180625158
OCQJ01003420
[OCQJ] human gut metagenome; human gut
158
85
-
Cys
GCA
[ENA]
¢þ
>WENV180625157
OCQJ01002071
[OCQJ] human gut metagenome; human gut
161
71
-
Ser
GGA
[ENA]
¢þ
>WENV180625115
OCQJ01000020
[OCQJ] human gut metagenome; human gut
163
77
-
Leu
GAG
[ENA]
¢þ
>WENV180625147
OCQJ01000305
[OCQJ] human gut metagenome; human gut
175
90
-
Leu
TAA
[ENA]
¢þ
>WENV180625155
OCQJ01000936
[OCQJ] human gut metagenome; human gut
182
256
+
Sup
TCA
[ENA]
¢þ
>WENV180625047
OCQJ01000002
[OCQJ] human gut metagenome; human gut
210
282
+
Phe
GAA
[ENA]
¢þ
>WENV180625132
OCQJ01000049
[OCQJ] human gut metagenome; human gut
232
159
-
fMet
CAT
[ENA]
¢þ
>WENV180625150
OCQJ01000516
[OCQJ] human gut metagenome; human gut
235
162
-
Ile2
CAT
[ENA]
¢þ
>WENV180625152
OCQJ01000916
[OCQJ] human gut metagenome; human gut
249
174
-
Ala
TGC
[ENA]
¢þ
>WENV180625156
OCQJ01000936
[OCQJ] human gut metagenome; human gut
254
324
+
Phe
GAA
[ENA]
¢þ
>WENV180625146
OCQJ01000305
[OCQJ] human gut metagenome; human gut
262
191
-
Gly
GCC
[ENA]
¢þ
>WENV180625048
OCQJ01000002
[OCQJ] human gut metagenome; human gut
287
369
+
Tyr
GTA
[ENA]
¢þ
>WENV180625149
OCQJ01000516
[OCQJ] human gut metagenome; human gut
336
262
-
Met
CAT
[ENA]
¢þ
>WENV180625145
OCQJ01000305
[OCQJ] human gut metagenome; human gut
342
267
-
Thr
TGT
[ENA]
¢þ
>WENV180625049
OCQJ01000002
[OCQJ] human gut metagenome; human gut
373
446
+
Trp
CCA
[ENA]
¢þ
>WENV180625144
OCQJ01000305
[OCQJ] human gut metagenome; human gut
431
348
-
Leu
TAG
[ENA]
¢þ
>WENV180625050
OCQJ01000002
[OCQJ] human gut metagenome; human gut
483
556
+
His
GTG
[ENA]
¢þ
>WENV180625143
OCQJ01000305
[OCQJ] human gut metagenome; human gut
520
446
-
Lys
TTT
[ENA]
¢þ
>WENV180625051
OCQJ01000002
[OCQJ] human gut metagenome; human gut
569
642
+
Gln
TTG
[ENA]
¢þ
>WENV180625052
OCQJ01000002
[OCQJ] human gut metagenome; human gut
667
737
+
Cys
GCA
[ENA]
¢þ
>WENV180625053
OCQJ01000002
[OCQJ] human gut metagenome; human gut
750
835
+
Leu
CAA
[ENA]
¢þ
>WENV180625142
OCQJ01000215
[OCQJ] human gut metagenome; human gut
1009
926
-
Leu
CAA
[ENA]
¢þ
>WENV180625100
OCQJ01000013
[OCQJ] human gut metagenome; human gut
1484
1410
-
Lys
CTT
[ENA]
¢þ
>WENV180625087
OCQJ01000011
[OCQJ] human gut metagenome; human gut
2586
2512
-
Ala
CGC
[ENA]
¢þ
>WENV180625130
OCQJ01000047
[OCQJ] human gut metagenome; human gut
10903
10982
+
Gln
TTG
[ENA]
¢þ
>WENV180625085
OCQJ01000011
[OCQJ] human gut metagenome; human gut
13488
13562
+
Arg
CCT
[ENA]
¢þ
>WENV180625137
OCQJ01000050
[OCQJ] human gut metagenome; human gut
14290
14216
-
Val
GAC
[ENA]
¢þ
>WENV180625136
OCQJ01000050
[OCQJ] human gut metagenome; human gut
14362
14291
-
Cys
GCA
[ENA]
¢þ
>WENV180625135
OCQJ01000050
[OCQJ] human gut metagenome; human gut
14463
14390
-
Gly
GCC
[ENA]
¢þ
>WENV180625134
OCQJ01000050
[OCQJ] human gut metagenome; human gut
14961
15035
+
Val
CAC
[ENA]
¢þ
>WENV180625140
OCQJ01000076
[OCQJ] human gut metagenome; human gut
15116
15026
-
Ser
GGA
[ENA]
¢þ
>WENV180625139
OCQJ01000051
[OCQJ] human gut metagenome; human gut
18307
18224
-
Leu
TAG
[ENA]
¢þ
>WENV180625079
OCQJ01000008
[OCQJ] human gut metagenome; human gut
20742
20823
+
Tyr
GTA
[ENA]
¢þ
>WENV180625080
OCQJ01000008
[OCQJ] human gut metagenome; human gut
21028
21101
+
Thr
GGT
[ENA]
¢þ
>WENV180625081
OCQJ01000008
[OCQJ] human gut metagenome; human gut
21164
21238
+
Met
CAT
[ENA]
¢þ
>WENV180625117
OCQJ01000026
[OCQJ] human gut metagenome; human gut
21289
21375
+
Leu
GAG
[ENA]
¢þ
>WENV180625138
OCQJ01000051
[OCQJ] human gut metagenome; human gut
23422
23348
-
Lys
CTT
[ENA]
¢þ
>WENV180625082
OCQJ01000008
[OCQJ] human gut metagenome; human gut
26355
26428
+
Trp
CCA
[ENA]
¢þ
>WENV180625105
OCQJ01000014
[OCQJ] human gut metagenome; human gut
30213
30142
-
Gly
CCC
[ENA]
¢þ
>WENV180625131
OCQJ01000047
[OCQJ] human gut metagenome; human gut
30938
31012
+
Leu
TAA
[ENA]
¢þ
>WENV180625129
OCQJ01000041
[OCQJ] human gut metagenome; human gut
33539
33631
+
Ser
TGA
[ENA]
¢þ
>WENV180625116
OCQJ01000025
[OCQJ] human gut metagenome; human gut
33556
33485
-
Arg
CCG
[ENA]
¢þ
>WENV180625042
OCQJ01000001
[OCQJ] human gut metagenome; human gut
34263
34352
+
Ser
CGA
[ENA]
¢þ
>WENV180625128
OCQJ01000040
[OCQJ] human gut metagenome; human gut
36263
36336
+
Thr
CGT
[ENA]
¢þ
>WENV180625086
OCQJ01000011
[OCQJ] human gut metagenome; human gut
37618
37543
-
Thr
TGT
[ENA]
¢þ
>WENV180625088
OCQJ01000012
[OCQJ] human gut metagenome; human gut
39711
39637
-
Arg
TCT
[ENA]
¢þ
>WENV180625120
OCQJ01000039
[OCQJ] human gut metagenome; human gut
42145
42220
+
Val
TAC
[ENA]
¢þ
>WENV180625121
OCQJ01000039
[OCQJ] human gut metagenome; human gut
42227
42302
+
Thr
TGT
[ENA]
¢þ
>WENV180625122
OCQJ01000039
[OCQJ] human gut metagenome; human gut
42308
42382
+
Lys
TTT
[ENA]
¢þ
>WENV180625123
OCQJ01000039
[OCQJ] human gut metagenome; human gut
42400
42474
+
Gly
GCC
[ENA]
¢þ
>WENV180625124
OCQJ01000039
[OCQJ] human gut metagenome; human gut
42486
42574
+
Leu
TAA
[ENA]
¢þ
>WENV180625125
OCQJ01000039
[OCQJ] human gut metagenome; human gut
42587
42663
+
Arg
ACG
[ENA]
¢þ
>WENV180625126
OCQJ01000039
[OCQJ] human gut metagenome; human gut
42690
42764
+
Pro
TGG
[ENA]
¢þ
>WENV180625127
OCQJ01000039
[OCQJ] human gut metagenome; human gut
42778
42853
+
Ala
TGC
[ENA]
¢þ
>WENV180625118
OCQJ01000033
[OCQJ] human gut metagenome; human gut
47057
47131
+
Glu
TTC
[ENA]
¢þ
>WENV180625119
OCQJ01000033
[OCQJ] human gut metagenome; human gut
47137
47209
+
Asp
GTC
[ENA]
¢þ
>WENV180625109
OCQJ01000017
[OCQJ] human gut metagenome; human gut
50353
50282
-
Gly
TCC
[ENA]
¢þ
>WENV180625108
OCQJ01000017
[OCQJ] human gut metagenome; human gut
51282
51208
-
Pro
TGG
[ENA]
¢þ
>WENV180625083
OCQJ01000010
[OCQJ] human gut metagenome; human gut
71793
71869
+
Ile
GAT
[ENA]
¢þ
>WENV180625110
OCQJ01000019
[OCQJ] human gut metagenome; human gut
75306
75221
-
Ser
GGA
[ENA]
¢þ
>WENV180625057
OCQJ01000003
[OCQJ] human gut metagenome; human gut
81335
81410
+
Ile2
CAT
[ENA]
¢þ
>WENV180625114
OCQJ01000020
[OCQJ] human gut metagenome; human gut
82278
82205
-
Lys
TTT
[ENA]
¢þ
>WENV180625113
OCQJ01000020
[OCQJ] human gut metagenome; human gut
82356
82282
-
Gln
TTG
[ENA]
¢þ
>WENV180625112
OCQJ01000020
[OCQJ] human gut metagenome; human gut
82444
82361
-
Tyr
GTA
[ENA]
¢þ
>WENV180625111
OCQJ01000020
[OCQJ] human gut metagenome; human gut
82536
82461
-
Val
TAC
[ENA]
¢þ
>WENV180625107
OCQJ01000017
[OCQJ] human gut metagenome; human gut
86907
86832
-
Arg
TCT
[ENA]
¢þ
>WENV180625106
OCQJ01000017
[OCQJ] human gut metagenome; human gut
88990
89065
+
His
GTG
[ENA]
¢þ
>WENV180625099
OCQJ01000013
[OCQJ] human gut metagenome; human gut
120806
120733
-
Ile2
CAT
[ENA]
¢þ
>WENV180625073
OCQJ01000007
[OCQJ] human gut metagenome; human gut
125273
125358
+
Ser
TGA
[ENA]
¢þ
>WENV180625074
OCQJ01000007
[OCQJ] human gut metagenome; human gut
132948
133038
+
Ser
GCT
[ENA]
¢þ
>WENV180625075
OCQJ01000007
[OCQJ] human gut metagenome; human gut
133247
133320
+
Arg
ACG
[ENA]
¢þ
>WENV180625067
OCQJ01000006
[OCQJ] human gut metagenome; human gut
136779
136853
+
Pro
GGG
[ENA]
¢þ
>WENV180625104
OCQJ01000014
[OCQJ] human gut metagenome; human gut
141387
141310
-
Phe
GAA
[ENA]
¢þ
>WENV180625103
OCQJ01000014
[OCQJ] human gut metagenome; human gut
141521
141447
-
Asp
GTC
[ENA]
¢þ
>WENV180625102
OCQJ01000014
[OCQJ] human gut metagenome; human gut
141956
141883
-
Glu
TTC
[ENA]
¢þ
>WENV180625101
OCQJ01000014
[OCQJ] human gut metagenome; human gut
144258
144332
+
Lys
TTT
[ENA]
¢þ
>WENV180625076
OCQJ01000007
[OCQJ] human gut metagenome; human gut
144307
144393
+
Ser
CGA
[ENA]
¢þ
>WENV180625065
OCQJ01000004
[OCQJ] human gut metagenome; human gut
167563
167479
-
Leu
CAA
[ENA]
¢þ
>WENV180625084
OCQJ01000010
[OCQJ] human gut metagenome; human gut
177730
177657
-
Ala
TGC
[ENA]
¢þ
>WENV180625068
OCQJ01000006
[OCQJ] human gut metagenome; human gut
185526
185599
+
Arg
CCG
[ENA]
¢þ
>WENV180625078
OCQJ01000007
[OCQJ] human gut metagenome; human gut
188693
188617
-
Pro
CGG
[ENA]
¢þ
>WENV180625098
OCQJ01000013
[OCQJ] human gut metagenome; human gut
193183
193110
-
Glu
TTC
[ENA]
¢þ
>WENV180625097
OCQJ01000013
[OCQJ] human gut metagenome; human gut
193286
193197
-
Ser
GCT
[ENA]
¢þ
>WENV180625096
OCQJ01000013
[OCQJ] human gut metagenome; human gut
193370
193295
-
Ile
GAT
[ENA]
¢þ
>WENV180625095
OCQJ01000013
[OCQJ] human gut metagenome; human gut
193449
193379
-
Gly
TCC
[ENA]
¢þ
>WENV180625094
OCQJ01000013
[OCQJ] human gut metagenome; human gut
193537
193460
-
Phe
GAA
[ENA]
¢þ
>WENV180625093
OCQJ01000013
[OCQJ] human gut metagenome; human gut
193616
193541
-
Asp
GTC
[ENA]
¢þ
>WENV180625092
OCQJ01000013
[OCQJ] human gut metagenome; human gut
193728
193653
-
fMet
CAT
[ENA]
¢þ
>WENV180625091
OCQJ01000013
[OCQJ] human gut metagenome; human gut
193850
193761
-
Ser
TGA
[ENA]
¢þ
>WENV180625090
OCQJ01000013
[OCQJ] human gut metagenome; human gut
193958
193883
-
Ile2
CAT
[ENA]
¢þ
>WENV180625089
OCQJ01000013
[OCQJ] human gut metagenome; human gut
194052
193977
-
Met
CAT
[ENA]
¢þ
>WENV180625069
OCQJ01000006
[OCQJ] human gut metagenome; human gut
209646
209722
+
fMet
CAT
[ENA]
¢þ
>WENV180625064
OCQJ01000004
[OCQJ] human gut metagenome; human gut
229298
229225
-
Ala
GGC
[ENA]
¢þ
>WENV180625063
OCQJ01000004
[OCQJ] human gut metagenome; human gut
229443
229368
-
Ala
GGC
[ENA]
¢þ
>WENV180625077
OCQJ01000007
[OCQJ] human gut metagenome; human gut
237171
237088
-
Leu
CAG
[ENA]
¢þ
>WENV180625054
OCQJ01000002
[OCQJ] human gut metagenome; human gut
254062
254148
+
Leu
GAG
[ENA]
¢þ
>WENV180625055
OCQJ01000002
[OCQJ] human gut metagenome; human gut
265395
265477
+
Tyr
GTA
[ENA]
¢þ
>WENV180625056
OCQJ01000002
[OCQJ] human gut metagenome; human gut
265485
265558
+
Gln
TTG
[ENA]
¢þ
>WENV180625043
OCQJ01000001
[OCQJ] human gut metagenome; human gut
272944
273016
+
Thr
CGT
[ENA]
¢þ
>WENV180625070
OCQJ01000006
[OCQJ] human gut metagenome; human gut
274660
274735
+
Val
TAC
[ENA]
¢þ
>WENV180625072
OCQJ01000006
[OCQJ] human gut metagenome; human gut
284794
284719
-
Glu
CTC
[ENA]
¢þ
>WENV180625071
OCQJ01000006
[OCQJ] human gut metagenome; human gut
285002
284930
-
Gln
CTG
[ENA]
¢þ
>WENV180625060
OCQJ01000003
[OCQJ] human gut metagenome; human gut
305420
305347
-
Arg
CCG
[ENA]
¢þ
>WENV180625061
OCQJ01000004
[OCQJ] human gut metagenome; human gut
326907
326980
+
Asn
GTT
[ENA]
¢þ
>WENV180625062
OCQJ01000004
[OCQJ] human gut metagenome; human gut
340225
340299
+
Ile2
CAT
[ENA]
¢þ
>WENV180625059
OCQJ01000003
[OCQJ] human gut metagenome; human gut
497198
497123
-
Arg
TCT
[ENA]
¢þ
>WENV180625058
OCQJ01000003
[OCQJ] human gut metagenome; human gut
547955
548030
+
Arg
CCT
[ENA]
¢þ
>WENV180625044
OCQJ01000001
[OCQJ] human gut metagenome; human gut
559651
559579
-
Thr
GGT
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
BACK