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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
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|
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HOW TO USE
tRNA gene List
[OCRJ] human gut metagenome; human gut
HIT:
144 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV180639212
OCRJ01000004
[OCRJ] human gut metagenome; human gut
1
74
+
Pro
TGG
[ENA]
¢þ
>WENV180639319
OCRJ01002215
[OCRJ] human gut metagenome; human gut
1
89
+
Ser
GCT
[ENA]
¢þ
>WENV180639325
OCRJ01002790
[OCRJ] human gut metagenome; human gut
1
90
+
Ser
TGA
[ENA]
¢þ
>WENV180639335
OCRJ01004711
[OCRJ] human gut metagenome; human gut
2
72
+
Gly
TCC
[ENA]
¢þ
>WENV180639337
OCRJ01004712
[OCRJ] human gut metagenome; human gut
2
94
+
Ser
TGA
[ENA]
¢þ
>WENV180639340
OCRJ01004811
[OCRJ] human gut metagenome; human gut
5
79
+
Val
TAC
[ENA]
¢þ
>WENV180639312
OCRJ01001595
[OCRJ] human gut metagenome; human gut
23
106
+
Leu
CAA
[ENA]
¢þ
>WENV180639303
OCRJ01001177
[OCRJ] human gut metagenome; human gut
52
126
+
Gly
GCC
[ENA]
¢þ
>WENV180639200
OCRJ01000002
[OCRJ] human gut metagenome; human gut
55
128
+
Trp
CCA
[ENA]
¢þ
>WENV180639328
OCRJ01002811
[OCRJ] human gut metagenome; human gut
64
139
+
Asp
GTC
[ENA]
¢þ
>WENV180639333
OCRJ01004318
[OCRJ] human gut metagenome; human gut
64
153
+
Ser
GCT
[ENA]
¢þ
>WENV180639311
OCRJ01001511
[OCRJ] human gut metagenome; human gut
75
2
-
Arg
ACG
[ENA]
¢þ
>WENV180639323
OCRJ01002660
[OCRJ] human gut metagenome; human gut
76
151
+
Met
CAT
[ENA]
¢þ
>WENV180639338
OCRJ01004727
[OCRJ] human gut metagenome; human gut
77
2
-
Asn
GTT
[ENA]
¢þ
>WENV180639278
OCRJ01000163
[OCRJ] human gut metagenome; human gut
80
154
+
Asn
GTT
[ENA]
¢þ
>WENV180639336
OCRJ01004711
[OCRJ] human gut metagenome; human gut
86
159
+
Ile
GAT
[ENA]
¢þ
>WENV180639315
OCRJ01002085
[OCRJ] human gut metagenome; human gut
89
163
+
Gly
GCC
[ENA]
¢þ
>WENV180639332
OCRJ01003787
[OCRJ] human gut metagenome; human gut
112
185
+
fMet
CAT
[ENA]
¢þ
>WENV180639326
OCRJ01002790
[OCRJ] human gut metagenome; human gut
123
198
+
fMet
CAT
[ENA]
¢þ
>WENV180639339
OCRJ01004733
[OCRJ] human gut metagenome; human gut
131
57
-
Asn
GTT
[ENA]
¢þ
>WENV180639322
OCRJ01002307
[OCRJ] human gut metagenome; human gut
133
60
-
Gly
TCC
[ENA]
¢þ
>WENV180639304
OCRJ01001177
[OCRJ] human gut metagenome; human gut
134
210
+
Arg
ACG
[ENA]
¢þ
>WENV180639334
OCRJ01004692
[OCRJ] human gut metagenome; human gut
142
65
-
Phe
GAA
[ENA]
¢þ
>WENV180639330
OCRJ01003581
[OCRJ] human gut metagenome; human gut
161
71
-
Ser
GGA
[ENA]
¢þ
>WENV180639201
OCRJ01000002
[OCRJ] human gut metagenome; human gut
165
238
+
His
GTG
[ENA]
¢þ
>WENV180639279
OCRJ01000163
[OCRJ] human gut metagenome; human gut
167
255
+
Leu
TAA
[ENA]
¢þ
>WENV180639324
OCRJ01002660
[OCRJ] human gut metagenome; human gut
170
245
+
Ile2
CAT
[ENA]
¢þ
>WENV180639316
OCRJ01002085
[OCRJ] human gut metagenome; human gut
174
262
+
Leu
TAA
[ENA]
¢þ
>WENV180639310
OCRJ01001511
[OCRJ] human gut metagenome; human gut
175
90
-
Leu
TAA
[ENA]
¢þ
>WENV180639329
OCRJ01002811
[OCRJ] human gut metagenome; human gut
185
257
+
Phe
GAA
[ENA]
¢þ
>WENV180639321
OCRJ01002307
[OCRJ] human gut metagenome; human gut
226
151
-
His
GTG
[ENA]
¢þ
>WENV180639313
OCRJ01001663
[OCRJ] human gut metagenome; human gut
233
308
+
Arg
TCT
[ENA]
¢þ
>WENV180639327
OCRJ01002790
[OCRJ] human gut metagenome; human gut
245
320
+
Asp
GTC
[ENA]
¢þ
>WENV180639331
OCRJ01003679
[OCRJ] human gut metagenome; human gut
250
162
-
Ser
GCT
[ENA]
¢þ
>WENV180639202
OCRJ01000002
[OCRJ] human gut metagenome; human gut
251
324
+
Gln
TTG
[ENA]
¢þ
>WENV180639305
OCRJ01001177
[OCRJ] human gut metagenome; human gut
253
339
+
Leu
GAG
[ENA]
¢þ
>WENV180639309
OCRJ01001511
[OCRJ] human gut metagenome; human gut
262
191
-
Gly
GCC
[ENA]
¢þ
>WENV180639317
OCRJ01002085
[OCRJ] human gut metagenome; human gut
268
344
+
Arg
ACG
[ENA]
¢þ
>WENV180639314
OCRJ01001932
[OCRJ] human gut metagenome; human gut
279
354
+
Lys
CTT
[ENA]
¢þ
>WENV180639280
OCRJ01000163
[OCRJ] human gut metagenome; human gut
279
355
+
fMet
CAT
[ENA]
¢þ
>WENV180639318
OCRJ01002203
[OCRJ] human gut metagenome; human gut
288
217
-
Arg
CCG
[ENA]
¢þ
>WENV180639320
OCRJ01002307
[OCRJ] human gut metagenome; human gut
313
239
-
Phe
GAA
[ENA]
¢þ
>WENV180639308
OCRJ01001511
[OCRJ] human gut metagenome; human gut
342
267
-
Thr
TGT
[ENA]
¢þ
>WENV180639203
OCRJ01000002
[OCRJ] human gut metagenome; human gut
349
419
+
Cys
GCA
[ENA]
¢þ
>WENV180639281
OCRJ01000163
[OCRJ] human gut metagenome; human gut
367
443
+
Met
CAT
[ENA]
¢þ
>WENV180639307
OCRJ01001511
[OCRJ] human gut metagenome; human gut
431
348
-
Leu
TAG
[ENA]
¢þ
>WENV180639204
OCRJ01000002
[OCRJ] human gut metagenome; human gut
432
517
+
Leu
CAA
[ENA]
¢þ
>WENV180639293
OCRJ01000164
[OCRJ] human gut metagenome; human gut
445
521
+
Pro
TGG
[ENA]
¢þ
>WENV180639258
OCRJ01000072
[OCRJ] human gut metagenome; human gut
484
411
-
Trp
CCA
[ENA]
¢þ
>WENV180639282
OCRJ01000163
[OCRJ] human gut metagenome; human gut
485
559
+
Glu
TTC
[ENA]
¢þ
>WENV180639306
OCRJ01001511
[OCRJ] human gut metagenome; human gut
520
446
-
Lys
TTT
[ENA]
¢þ
>WENV180639283
OCRJ01000163
[OCRJ] human gut metagenome; human gut
564
639
+
Val
TAC
[ENA]
¢þ
>WENV180639284
OCRJ01000163
[OCRJ] human gut metagenome; human gut
646
722
+
Asp
GTC
[ENA]
¢þ
>WENV180639285
OCRJ01000163
[OCRJ] human gut metagenome; human gut
760
835
+
Thr
TGT
[ENA]
¢þ
>WENV180639286
OCRJ01000163
[OCRJ] human gut metagenome; human gut
859
944
+
Tyr
GTA
[ENA]
¢þ
>WENV180639287
OCRJ01000163
[OCRJ] human gut metagenome; human gut
968
1041
+
Gly
TCC
[ENA]
¢þ
>WENV180639288
OCRJ01000163
[OCRJ] human gut metagenome; human gut
1047
1123
+
Arg
TCT
[ENA]
¢þ
>WENV180639289
OCRJ01000163
[OCRJ] human gut metagenome; human gut
1138
1213
+
Gln
TTG
[ENA]
¢þ
>WENV180639290
OCRJ01000163
[OCRJ] human gut metagenome; human gut
1226
1301
+
Lys
TTT
[ENA]
¢þ
>WENV180639291
OCRJ01000163
[OCRJ] human gut metagenome; human gut
1322
1410
+
Ser
TGA
[ENA]
¢þ
>WENV180639292
OCRJ01000163
[OCRJ] human gut metagenome; human gut
1475
1550
+
Lys
TTT
[ENA]
¢þ
>WENV180639218
OCRJ01000006
[OCRJ] human gut metagenome; human gut
1484
1410
-
Lys
CTT
[ENA]
¢þ
>WENV180639274
OCRJ01000132
[OCRJ] human gut metagenome; human gut
2518
2609
+
Ser
GCT
[ENA]
¢þ
>WENV180639275
OCRJ01000132
[OCRJ] human gut metagenome; human gut
2617
2693
+
Ile2
CAT
[ENA]
¢þ
>WENV180639276
OCRJ01000132
[OCRJ] human gut metagenome; human gut
2701
2776
+
Phe
GAA
[ENA]
¢þ
>WENV180639302
OCRJ01000265
[OCRJ] human gut metagenome; human gut
2712
2626
-
Leu
CAA
[ENA]
¢þ
>WENV180639299
OCRJ01000248
[OCRJ] human gut metagenome; human gut
2718
2643
-
Ala
TGC
[ENA]
¢þ
>WENV180639301
OCRJ01000265
[OCRJ] human gut metagenome; human gut
2823
2747
-
His
GTG
[ENA]
¢þ
>WENV180639300
OCRJ01000251
[OCRJ] human gut metagenome; human gut
3719
3647
-
Arg
CCG
[ENA]
¢þ
>WENV180639244
OCRJ01000039
[OCRJ] human gut metagenome; human gut
3868
3794
-
Lys
TTT
[ENA]
¢þ
>WENV180639259
OCRJ01000083
[OCRJ] human gut metagenome; human gut
4008
3925
-
Leu
CAG
[ENA]
¢þ
>WENV180639257
OCRJ01000072
[OCRJ] human gut metagenome; human gut
5675
5601
-
Met
CAT
[ENA]
¢þ
>WENV180639256
OCRJ01000072
[OCRJ] human gut metagenome; human gut
5811
5738
-
Thr
GGT
[ENA]
¢þ
>WENV180639255
OCRJ01000072
[OCRJ] human gut metagenome; human gut
6097
6016
-
Tyr
GTA
[ENA]
¢þ
>WENV180639241
OCRJ01000039
[OCRJ] human gut metagenome; human gut
6170
6243
+
Glu
TTC
[ENA]
¢þ
>WENV180639240
OCRJ01000035
[OCRJ] human gut metagenome; human gut
6199
6126
-
Thr
CGT
[ENA]
¢þ
>WENV180639242
OCRJ01000039
[OCRJ] human gut metagenome; human gut
6605
6679
+
Asp
GTC
[ENA]
¢þ
>WENV180639243
OCRJ01000039
[OCRJ] human gut metagenome; human gut
6739
6816
+
Phe
GAA
[ENA]
¢þ
>WENV180639273
OCRJ01000127
[OCRJ] human gut metagenome; human gut
7438
7363
-
Thr
CGT
[ENA]
¢þ
>WENV180639295
OCRJ01000195
[OCRJ] human gut metagenome; human gut
7998
8087
+
Ser
GGA
[ENA]
¢þ
>WENV180639298
OCRJ01000204
[OCRJ] human gut metagenome; human gut
9157
9065
-
Ser
TGA
[ENA]
¢þ
>WENV180639297
OCRJ01000204
[OCRJ] human gut metagenome; human gut
9240
9167
-
Ile2
CAT
[ENA]
¢þ
>WENV180639296
OCRJ01000204
[OCRJ] human gut metagenome; human gut
9341
9267
-
Met
CAT
[ENA]
¢þ
>WENV180639222
OCRJ01000008
[OCRJ] human gut metagenome; human gut
9540
9465
-
Val
TAC
[ENA]
¢þ
>WENV180639253
OCRJ01000058
[OCRJ] human gut metagenome; human gut
9989
9914
-
His
GTG
[ENA]
¢þ
>WENV180639294
OCRJ01000165
[OCRJ] human gut metagenome; human gut
11419
11344
-
Trp
CCA
[ENA]
¢þ
>WENV180639254
OCRJ01000067
[OCRJ] human gut metagenome; human gut
11559
11630
+
Gly
CCC
[ENA]
¢þ
>WENV180639252
OCRJ01000058
[OCRJ] human gut metagenome; human gut
12072
12147
+
Arg
TCT
[ENA]
¢þ
>WENV180639277
OCRJ01000149
[OCRJ] human gut metagenome; human gut
12659
12586
-
Cys
GCA
[ENA]
¢þ
>WENV180639231
OCRJ01000012
[OCRJ] human gut metagenome; human gut
13170
13244
+
Ile2
CAT
[ENA]
¢þ
>WENV180639234
OCRJ01000018
[OCRJ] human gut metagenome; human gut
13599
13684
+
Ser
GGA
[ENA]
¢þ
>WENV180639272
OCRJ01000102
[OCRJ] human gut metagenome; human gut
14290
14216
-
Val
GAC
[ENA]
¢þ
>WENV180639271
OCRJ01000102
[OCRJ] human gut metagenome; human gut
14362
14291
-
Cys
GCA
[ENA]
¢þ
>WENV180639270
OCRJ01000102
[OCRJ] human gut metagenome; human gut
14463
14390
-
Gly
GCC
[ENA]
¢þ
>WENV180639269
OCRJ01000102
[OCRJ] human gut metagenome; human gut
14961
15035
+
Val
CAC
[ENA]
¢þ
>WENV180639245
OCRJ01000042
[OCRJ] human gut metagenome; human gut
17960
18034
+
Pro
TGG
[ENA]
¢þ
>WENV180639251
OCRJ01000056
[OCRJ] human gut metagenome; human gut
18307
18224
-
Leu
TAG
[ENA]
¢þ
>WENV180639249
OCRJ01000046
[OCRJ] human gut metagenome; human gut
18400
18483
+
Leu
TAG
[ENA]
¢þ
>WENV180639246
OCRJ01000042
[OCRJ] human gut metagenome; human gut
18889
18960
+
Gly
TCC
[ENA]
¢þ
>WENV180639232
OCRJ01000013
[OCRJ] human gut metagenome; human gut
20049
20135
+
Leu
GAG
[ENA]
¢þ
>WENV180639268
OCRJ01000091
[OCRJ] human gut metagenome; human gut
21050
20977
-
Lys
TTT
[ENA]
¢þ
>WENV180639267
OCRJ01000091
[OCRJ] human gut metagenome; human gut
21128
21054
-
Gln
TTG
[ENA]
¢þ
>WENV180639266
OCRJ01000091
[OCRJ] human gut metagenome; human gut
21221
21138
-
Tyr
GTA
[ENA]
¢þ
>WENV180639265
OCRJ01000091
[OCRJ] human gut metagenome; human gut
21301
21226
-
Thr
TGT
[ENA]
¢þ
>WENV180639264
OCRJ01000091
[OCRJ] human gut metagenome; human gut
21383
21308
-
Val
TAC
[ENA]
¢þ
>WENV180639263
OCRJ01000091
[OCRJ] human gut metagenome; human gut
21463
21390
-
Glu
TTC
[ENA]
¢þ
>WENV180639262
OCRJ01000091
[OCRJ] human gut metagenome; human gut
21538
21464
-
Asn
GTT
[ENA]
¢þ
>WENV180639260
OCRJ01000089
[OCRJ] human gut metagenome; human gut
21985
22059
+
Glu
TTC
[ENA]
¢þ
>WENV180639261
OCRJ01000089
[OCRJ] human gut metagenome; human gut
22067
22142
+
Asp
GTC
[ENA]
¢þ
>WENV180639250
OCRJ01000056
[OCRJ] human gut metagenome; human gut
23422
23348
-
Lys
CTT
[ENA]
¢þ
>WENV180639228
OCRJ01000010
[OCRJ] human gut metagenome; human gut
25526
25601
+
Ala
GGC
[ENA]
¢þ
>WENV180639229
OCRJ01000010
[OCRJ] human gut metagenome; human gut
25671
25744
+
Ala
GGC
[ENA]
¢þ
>WENV180639239
OCRJ01000028
[OCRJ] human gut metagenome; human gut
32632
32708
+
Arg
CCT
[ENA]
¢þ
>WENV180639236
OCRJ01000020
[OCRJ] human gut metagenome; human gut
32949
32875
-
Leu
TAA
[ENA]
¢þ
>WENV180639247
OCRJ01000043
[OCRJ] human gut metagenome; human gut
35130
35202
+
Gln
CTG
[ENA]
¢þ
>WENV180639248
OCRJ01000043
[OCRJ] human gut metagenome; human gut
35338
35413
+
Glu
CTC
[ENA]
¢þ
>WENV180639238
OCRJ01000024
[OCRJ] human gut metagenome; human gut
44631
44704
+
Ala
TGC
[ENA]
¢þ
>WENV180639237
OCRJ01000021
[OCRJ] human gut metagenome; human gut
52160
52233
+
Asn
GTT
[ENA]
¢þ
>WENV180639208
OCRJ01000003
[OCRJ] human gut metagenome; human gut
52898
52973
+
Ile2
CAT
[ENA]
¢þ
>WENV180639235
OCRJ01000020
[OCRJ] human gut metagenome; human gut
52984
52905
-
Gln
TTG
[ENA]
¢þ
>WENV180639223
OCRJ01000009
[OCRJ] human gut metagenome; human gut
61303
61388
+
Ser
TGA
[ENA]
¢þ
>WENV180639224
OCRJ01000009
[OCRJ] human gut metagenome; human gut
68978
69068
+
Ser
GCT
[ENA]
¢þ
>WENV180639225
OCRJ01000009
[OCRJ] human gut metagenome; human gut
69277
69350
+
Arg
ACG
[ENA]
¢þ
>WENV180639233
OCRJ01000014
[OCRJ] human gut metagenome; human gut
72971
72895
-
Ile
GAT
[ENA]
¢þ
>WENV180639221
OCRJ01000008
[OCRJ] human gut metagenome; human gut
74554
74478
-
fMet
CAT
[ENA]
¢þ
>WENV180639226
OCRJ01000009
[OCRJ] human gut metagenome; human gut
80337
80423
+
Ser
CGA
[ENA]
¢þ
>WENV180639230
OCRJ01000010
[OCRJ] human gut metagenome; human gut
87356
87440
+
Leu
CAA
[ENA]
¢þ
>WENV180639220
OCRJ01000008
[OCRJ] human gut metagenome; human gut
98674
98601
-
Arg
CCG
[ENA]
¢þ
>WENV180639217
OCRJ01000006
[OCRJ] human gut metagenome; human gut
120806
120733
-
Ile2
CAT
[ENA]
¢þ
>WENV180639227
OCRJ01000009
[OCRJ] human gut metagenome; human gut
124723
124647
-
Pro
CGG
[ENA]
¢þ
>WENV180639219
OCRJ01000008
[OCRJ] human gut metagenome; human gut
147421
147347
-
Pro
GGG
[ENA]
¢þ
>WENV180639213
OCRJ01000005
[OCRJ] human gut metagenome; human gut
167701
167776
+
Thr
TGT
[ENA]
¢þ
>WENV180639215
OCRJ01000005
[OCRJ] human gut metagenome; human gut
191831
191757
-
Arg
CCT
[ENA]
¢þ
>WENV180639216
OCRJ01000006
[OCRJ] human gut metagenome; human gut
193183
193110
-
Glu
TTC
[ENA]
¢þ
>WENV180639214
OCRJ01000005
[OCRJ] human gut metagenome; human gut
202733
202807
+
Ala
CGC
[ENA]
¢þ
>WENV180639197
OCRJ01000001
[OCRJ] human gut metagenome; human gut
207449
207521
+
Thr
GGT
[ENA]
¢þ
>WENV180639205
OCRJ01000002
[OCRJ] human gut metagenome; human gut
253744
253830
+
Leu
GAG
[ENA]
¢þ
>WENV180639206
OCRJ01000002
[OCRJ] human gut metagenome; human gut
265077
265159
+
Tyr
GTA
[ENA]
¢þ
>WENV180639207
OCRJ01000002
[OCRJ] human gut metagenome; human gut
265167
265240
+
Gln
TTG
[ENA]
¢þ
>WENV180639211
OCRJ01000003
[OCRJ] human gut metagenome; human gut
276983
276910
-
Arg
CCG
[ENA]
¢þ
>WENV180639210
OCRJ01000003
[OCRJ] human gut metagenome; human gut
468761
468686
-
Arg
TCT
[ENA]
¢þ
>WENV180639199
OCRJ01000001
[OCRJ] human gut metagenome; human gut
494156
494084
-
Thr
CGT
[ENA]
¢þ
>WENV180639209
OCRJ01000003
[OCRJ] human gut metagenome; human gut
519518
519593
+
Arg
CCT
[ENA]
¢þ
>WENV180639198
OCRJ01000001
[OCRJ] human gut metagenome; human gut
732837
732748
-
Ser
CGA
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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