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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA gene List
[OCRK] human gut metagenome; human gut
HIT:
68 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV180639395
OCRK01000633
[OCRK] human gut metagenome; human gut
1
76
+
Lys
TTT
[ENA]
¢þ
>WENV180639394
OCRK01000577
[OCRK] human gut metagenome; human gut
7
77
+
Ala
TGC
[ENA]
¢þ
>WENV180639407
OCRK01003520
[OCRK] human gut metagenome; human gut
16
89
+
His
GTG
[ENA]
¢þ
>WENV180639401
OCRK01002408
[OCRK] human gut metagenome; human gut
38
110
+
Thr
AGT
[ENA]
¢þ
>WENV180639402
OCRK01002587
[OCRK] human gut metagenome; human gut
59
134
+
Val
TAC
[ENA]
¢þ
>WENV180639360
OCRK01000011
[OCRK] human gut metagenome; human gut
64
153
+
Ser
TGA
[ENA]
¢þ
>WENV180639371
OCRK01000016
[OCRK] human gut metagenome; human gut
67
141
+
Ala
TGC
[ENA]
¢þ
>WENV180639406
OCRK01002989
[OCRK] human gut metagenome; human gut
77
2
-
Asn
GTT
[ENA]
¢þ
>WENV180639385
OCRK01000369
[OCRK] human gut metagenome; human gut
77
167
+
Ser
GGA
[ENA]
¢þ
>WENV180639405
OCRK01002929
[OCRK] human gut metagenome; human gut
79
3
-
Ile
GAT
[ENA]
¢þ
>WENV180639408
OCRK01003872
[OCRK] human gut metagenome; human gut
79
6
-
Gly
TCC
[ENA]
¢þ
>WENV180639396
OCRK01000633
[OCRK] human gut metagenome; human gut
85
167
+
Leu
TAG
[ENA]
¢þ
>WENV180639403
OCRK01002589
[OCRK] human gut metagenome; human gut
95
12
-
Leu
CAA
[ENA]
¢þ
>WENV180639349
OCRK01000006
[OCRK] human gut metagenome; human gut
96
186
+
Ser
GGA
[ENA]
¢þ
>WENV180639404
OCRK01002845
[OCRK] human gut metagenome; human gut
133
59
-
Gln
TTG
[ENA]
¢þ
>WENV180639391
OCRK01000416
[OCRK] human gut metagenome; human gut
137
66
-
Met
CAT
[ENA]
¢þ
>WENV180639390
OCRK01000400
[OCRK] human gut metagenome; human gut
160
230
+
Asn
GTT
[ENA]
¢þ
>WENV180639393
OCRK01000555
[OCRK] human gut metagenome; human gut
163
77
-
Leu
GAG
[ENA]
¢þ
>WENV180639400
OCRK01001437
[OCRK] human gut metagenome; human gut
163
88
-
Ile2
CAT
[ENA]
¢þ
>WENV180639397
OCRK01000633
[OCRK] human gut metagenome; human gut
171
245
+
Gly
GCC
[ENA]
¢þ
>WENV180639361
OCRK01000011
[OCRK] human gut metagenome; human gut
186
261
+
fMet
CAT
[ENA]
¢þ
>WENV180639350
OCRK01000006
[OCRK] human gut metagenome; human gut
202
275
+
Glu
TTC
[ENA]
¢þ
>WENV180639398
OCRK01000633
[OCRK] human gut metagenome; human gut
257
345
+
Leu
TAA
[ENA]
¢þ
>WENV180639389
OCRK01000389
[OCRK] human gut metagenome; human gut
283
213
-
Phe
GAA
[ENA]
¢þ
>WENV180639362
OCRK01000011
[OCRK] human gut metagenome; human gut
298
373
+
Asp
GTC
[ENA]
¢þ
>WENV180639351
OCRK01000006
[OCRK] human gut metagenome; human gut
301
375
+
Val
TAC
[ENA]
¢þ
>WENV180639388
OCRK01000389
[OCRK] human gut metagenome; human gut
355
281
-
Sup
TCA
[ENA]
¢þ
>WENV180639399
OCRK01000633
[OCRK] human gut metagenome; human gut
358
432
+
Arg
ACG
[ENA]
¢þ
>WENV180639386
OCRK01000371
[OCRK] human gut metagenome; human gut
362
290
-
Ile
GAT
[ENA]
¢þ
>WENV180639363
OCRK01000011
[OCRK] human gut metagenome; human gut
377
454
+
Phe
GAA
[ENA]
¢þ
>WENV180639352
OCRK01000006
[OCRK] human gut metagenome; human gut
385
460
+
Asp
GTC
[ENA]
¢þ
>WENV180639364
OCRK01000011
[OCRK] human gut metagenome; human gut
465
535
+
Gly
TCC
[ENA]
¢þ
>WENV180639353
OCRK01000006
[OCRK] human gut metagenome; human gut
506
578
+
Phe
GAA
[ENA]
¢þ
>WENV180639387
OCRK01000389
[OCRK] human gut metagenome; human gut
516
446
-
Arg
TCT
[ENA]
¢þ
>WENV180639365
OCRK01000011
[OCRK] human gut metagenome; human gut
544
619
+
Ile
GAT
[ENA]
¢þ
>WENV180639354
OCRK01000006
[OCRK] human gut metagenome; human gut
583
665
+
Tyr
GTA
[ENA]
¢þ
>WENV180639381
OCRK01000044
[OCRK] human gut metagenome; human gut
609
680
+
Arg
CCG
[ENA]
¢þ
>WENV180639366
OCRK01000011
[OCRK] human gut metagenome; human gut
628
717
+
Ser
GCT
[ENA]
¢þ
>WENV180639355
OCRK01000006
[OCRK] human gut metagenome; human gut
669
742
+
Trp
CCA
[ENA]
¢þ
>WENV180639367
OCRK01000011
[OCRK] human gut metagenome; human gut
731
804
+
Glu
TTC
[ENA]
¢þ
>WENV180639356
OCRK01000006
[OCRK] human gut metagenome; human gut
779
852
+
His
GTG
[ENA]
¢þ
>WENV180639357
OCRK01000006
[OCRK] human gut metagenome; human gut
865
938
+
Gln
TTG
[ENA]
¢þ
>WENV180639358
OCRK01000006
[OCRK] human gut metagenome; human gut
963
1033
+
Cys
GCA
[ENA]
¢þ
>WENV180639359
OCRK01000006
[OCRK] human gut metagenome; human gut
1046
1131
+
Leu
CAA
[ENA]
¢þ
>WENV180639392
OCRK01000419
[OCRK] human gut metagenome; human gut
1078
1004
-
Lys
TTT
[ENA]
¢þ
>WENV180639383
OCRK01000062
[OCRK] human gut metagenome; human gut
2278
2186
-
Ser
TGA
[ENA]
¢þ
>WENV180639372
OCRK01000016
[OCRK] human gut metagenome; human gut
3455
3529
+
Val
TAC
[ENA]
¢þ
>WENV180639373
OCRK01000016
[OCRK] human gut metagenome; human gut
3534
3608
+
Lys
TTT
[ENA]
¢þ
>WENV180639374
OCRK01000016
[OCRK] human gut metagenome; human gut
3623
3706
+
Leu
TAG
[ENA]
¢þ
>WENV180639375
OCRK01000016
[OCRK] human gut metagenome; human gut
3712
3787
+
Thr
TGT
[ENA]
¢þ
>WENV180639376
OCRK01000016
[OCRK] human gut metagenome; human gut
3792
3863
+
Gly
GCC
[ENA]
¢þ
>WENV180639377
OCRK01000016
[OCRK] human gut metagenome; human gut
3879
3964
+
Leu
TAA
[ENA]
¢þ
>WENV180639378
OCRK01000016
[OCRK] human gut metagenome; human gut
3979
4052
+
Arg
ACG
[ENA]
¢þ
>WENV180639379
OCRK01000016
[OCRK] human gut metagenome; human gut
4142
4215
+
Pro
TGG
[ENA]
¢þ
>WENV180639384
OCRK01000173
[OCRK] human gut metagenome; human gut
4957
5030
+
fMet
CAT
[ENA]
¢þ
>WENV180639380
OCRK01000017
[OCRK] human gut metagenome; human gut
12296
12207
-
Ser
CGA
[ENA]
¢þ
>WENV180639382
OCRK01000049
[OCRK] human gut metagenome; human gut
13242
13168
-
Arg
TCT
[ENA]
¢þ
>WENV180639369
OCRK01000012
[OCRK] human gut metagenome; human gut
48144
48219
+
Ile2
CAT
[ENA]
¢þ
>WENV180639370
OCRK01000013
[OCRK] human gut metagenome; human gut
65395
65469
+
Lys
CTT
[ENA]
¢þ
>WENV180639348
OCRK01000005
[OCRK] human gut metagenome; human gut
66941
67013
+
Thr
GGT
[ENA]
¢þ
>WENV180639368
OCRK01000011
[OCRK] human gut metagenome; human gut
73108
73181
+
Ile2
CAT
[ENA]
¢þ
>WENV180639346
OCRK01000002
[OCRK] human gut metagenome; human gut
86695
86622
-
Arg
CCG
[ENA]
¢þ
>WENV180639341
OCRK01000001
[OCRK] human gut metagenome; human gut
91263
91349
+
Leu
GAG
[ENA]
¢þ
>WENV180639342
OCRK01000001
[OCRK] human gut metagenome; human gut
102596
102678
+
Tyr
GTA
[ENA]
¢þ
>WENV180639343
OCRK01000001
[OCRK] human gut metagenome; human gut
102686
102759
+
Gln
TTG
[ENA]
¢þ
>WENV180639347
OCRK01000003
[OCRK] human gut metagenome; human gut
123931
123859
-
Thr
CGT
[ENA]
¢þ
>WENV180639345
OCRK01000002
[OCRK] human gut metagenome; human gut
278473
278398
-
Arg
TCT
[ENA]
¢þ
>WENV180639344
OCRK01000002
[OCRK] human gut metagenome; human gut
329230
329305
+
Arg
CCT
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
BACK