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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA gene List
[ODCN] human metagenome; G_DNA_Supragingival plaque
HIT:
62 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV180695959
ODCN01006125
[ODCN] human metagenome; G_DNA_Supragingival plaque
31
104
+
Val
CAC
[ENA]
¢þ
>WENV180695969
ODCN01009834
[ODCN] human metagenome; G_DNA_Supragingival plaque
33
106
+
Gln
TTG
[ENA]
¢þ
>WENV180695951
ODCN01002415
[ODCN] human metagenome; G_DNA_Supragingival plaque
36
108
+
Val
GAC
[ENA]
¢þ
>WENV180695961
ODCN01006723
[ODCN] human metagenome; G_DNA_Supragingival plaque
43
117
+
Glu
TTC
[ENA]
¢þ
>WENV180695936
ODCN01001199
[ODCN] human metagenome; G_DNA_Supragingival plaque
75
157
+
Tyr
GTA
[ENA]
¢þ
>WENV180695946
ODCN01001582
[ODCN] human metagenome; G_DNA_Supragingival plaque
81
7
-
Val
TAC
[ENA]
¢þ
>WENV180695966
ODCN01008646
[ODCN] human metagenome; G_DNA_Supragingival plaque
92
167
+
Thr
CGT
[ENA]
¢þ
>WENV180695968
ODCN01009597
[ODCN] human metagenome; G_DNA_Supragingival plaque
101
25
-
fMet
CAT
[ENA]
¢þ
>WENV180695954
ODCN01002634
[ODCN] human metagenome; G_DNA_Supragingival plaque
101
28
-
Arg
ACG
[ENA]
¢þ
>WENV180695965
ODCN01008183
[ODCN] human metagenome; G_DNA_Supragingival plaque
110
34
-
Arg
ACG
[ENA]
¢þ
>WENV180695970
ODCN01009834
[ODCN] human metagenome; G_DNA_Supragingival plaque
118
190
+
Cys
GCA
[ENA]
¢þ
>WENV180695932
ODCN01000726
[ODCN] human metagenome; G_DNA_Supragingival plaque
120
45
-
Glu
TTC
[ENA]
¢þ
>WENV180695962
ODCN01006723
[ODCN] human metagenome; G_DNA_Supragingival plaque
122
197
+
Val
TAC
[ENA]
¢þ
>WENV180695941
ODCN01001346
[ODCN] human metagenome; G_DNA_Supragingival plaque
129
58
-
Cys
GCA
[ENA]
¢þ
>WENV180695909
ODCN01000023
[ODCN] human metagenome; G_DNA_Supragingival plaque
135
207
+
Asn
GTT
[ENA]
¢þ
>WENV180695963
ODCN01007775
[ODCN] human metagenome; G_DNA_Supragingival plaque
138
64
-
Pro
GGG
[ENA]
¢þ
>WENV180695967
ODCN01008728
[ODCN] human metagenome; G_DNA_Supragingival plaque
146
73
-
Gly
TCC
[ENA]
¢þ
>WENV180695948
ODCN01001721
[ODCN] human metagenome; G_DNA_Supragingival plaque
173
247
+
Ala
TGC
[ENA]
¢þ
>WENV180695953
ODCN01002602
[ODCN] human metagenome; G_DNA_Supragingival plaque
178
253
+
Thr
TGT
[ENA]
¢þ
>WENV180695960
ODCN01006503
[ODCN] human metagenome; G_DNA_Supragingival plaque
180
88
-
Ser
TGA
[ENA]
¢þ
>WENV180695924
ODCN01000429
[ODCN] human metagenome; G_DNA_Supragingival plaque
196
122
-
Ala
TGC
[ENA]
¢þ
>WENV180695964
ODCN01008183
[ODCN] human metagenome; G_DNA_Supragingival plaque
211
123
-
Leu
TAA
[ENA]
¢þ
>WENV180695934
ODCN01001032
[ODCN] human metagenome; G_DNA_Supragingival plaque
217
290
+
Trp
CCA
[ENA]
¢þ
>WENV180695958
ODCN01003947
[ODCN] human metagenome; G_DNA_Supragingival plaque
226
142
-
Leu
TAG
[ENA]
¢þ
>WENV180695940
ODCN01001346
[ODCN] human metagenome; G_DNA_Supragingival plaque
230
157
-
Gly
GCC
[ENA]
¢þ
>WENV180695956
ODCN01003389
[ODCN] human metagenome; G_DNA_Supragingival plaque
231
303
+
Thr
GGT
[ENA]
¢þ
>WENV180695957
ODCN01003907
[ODCN] human metagenome; G_DNA_Supragingival plaque
234
310
+
Ile2
CAT
[ENA]
¢þ
>WENV180695943
ODCN01001403
[ODCN] human metagenome; G_DNA_Supragingival plaque
244
169
-
Glu
CTC
[ENA]
¢þ
>WENV180695944
ODCN01001408
[ODCN] human metagenome; G_DNA_Supragingival plaque
263
346
+
Leu
CAG
[ENA]
¢þ
>WENV180695931
ODCN01000726
[ODCN] human metagenome; G_DNA_Supragingival plaque
274
199
-
Ala
GGC
[ENA]
¢þ
>WENV180695952
ODCN01002487
[ODCN] human metagenome; G_DNA_Supragingival plaque
279
364
+
Ser
TGA
[ENA]
¢þ
>WENV180695955
ODCN01002917
[ODCN] human metagenome; G_DNA_Supragingival plaque
296
370
+
Lys
CTT
[ENA]
¢þ
>WENV180695930
ODCN01000693
[ODCN] human metagenome; G_DNA_Supragingival plaque
315
239
-
Pro
CGG
[ENA]
¢þ
>WENV180695950
ODCN01001853
[ODCN] human metagenome; G_DNA_Supragingival plaque
334
249
-
Ser
TGA
[ENA]
¢þ
>WENV180695937
ODCN01001199
[ODCN] human metagenome; G_DNA_Supragingival plaque
358
431
+
Thr
GGT
[ENA]
¢þ
>WENV180695939
ODCN01001268
[ODCN] human metagenome; G_DNA_Supragingival plaque
366
441
+
Trp
CCA
[ENA]
¢þ
>WENV180695914
ODCN01000061
[ODCN] human metagenome; G_DNA_Supragingival plaque
381
311
-
Met
CAT
[ENA]
¢þ
>WENV180695919
ODCN01000316
[ODCN] human metagenome; G_DNA_Supragingival plaque
384
458
+
Asp
GTC
[ENA]
¢þ
>WENV180695949
ODCN01001853
[ODCN] human metagenome; G_DNA_Supragingival plaque
440
358
-
Tyr
GTA
[ENA]
¢þ
>WENV180695942
ODCN01001403
[ODCN] human metagenome; G_DNA_Supragingival plaque
452
380
-
Gln
CTG
[ENA]
¢þ
>WENV180695933
ODCN01001011
[ODCN] human metagenome; G_DNA_Supragingival plaque
469
393
-
fMet
CAT
[ENA]
¢þ
>WENV180695935
ODCN01001097
[ODCN] human metagenome; G_DNA_Supragingival plaque
484
557
+
Asn
GTT
[ENA]
¢þ
>WENV180695947
ODCN01001663
[ODCN] human metagenome; G_DNA_Supragingival plaque
492
407
-
Ser
GGA
[ENA]
¢þ
>WENV180695938
ODCN01001199
[ODCN] human metagenome; G_DNA_Supragingival plaque
496
570
+
Met
CAT
[ENA]
¢þ
>WENV180695920
ODCN01000316
[ODCN] human metagenome; G_DNA_Supragingival plaque
519
594
+
Phe
GAA
[ENA]
¢þ
>WENV180695922
ODCN01000353
[ODCN] human metagenome; G_DNA_Supragingival plaque
529
604
+
Lys
TTT
[ENA]
¢þ
>WENV180695945
ODCN01001520
[ODCN] human metagenome; G_DNA_Supragingival plaque
545
470
-
Asn
GTT
[ENA]
¢þ
>WENV180695912
ODCN01000059
[ODCN] human metagenome; G_DNA_Supragingival plaque
548
618
+
Val
TAC
[ENA]
¢þ
>WENV180695929
ODCN01000587
[ODCN] human metagenome; G_DNA_Supragingival plaque
555
481
-
Lys
TTT
[ENA]
¢þ
>WENV180695927
ODCN01000538
[ODCN] human metagenome; G_DNA_Supragingival plaque
632
715
+
Leu
TAG
[ENA]
¢þ
>WENV180695926
ODCN01000494
[ODCN] human metagenome; G_DNA_Supragingival plaque
709
782
+
Ala
GGC
[ENA]
¢þ
>WENV180695928
ODCN01000553
[ODCN] human metagenome; G_DNA_Supragingival plaque
815
890
+
His
GTG
[ENA]
¢þ
>WENV180695917
ODCN01000151
[ODCN] human metagenome; G_DNA_Supragingival plaque
941
1016
+
Arg
TCT
[ENA]
¢þ
>WENV180695925
ODCN01000482
[ODCN] human metagenome; G_DNA_Supragingival plaque
1069
996
-
Arg
CCT
[ENA]
¢þ
>WENV180695923
ODCN01000353
[ODCN] human metagenome; G_DNA_Supragingival plaque
1209
1136
-
Thr
TGT
[ENA]
¢þ
>WENV180695921
ODCN01000318
[ODCN] human metagenome; G_DNA_Supragingival plaque
1263
1188
-
Ala
TGC
[ENA]
¢þ
>WENV180695918
ODCN01000219
[ODCN] human metagenome; G_DNA_Supragingival plaque
1359
1284
-
Thr
CGT
[ENA]
¢þ
>WENV180695913
ODCN01000061
[ODCN] human metagenome; G_DNA_Supragingival plaque
1607
1680
+
His
GTG
[ENA]
¢þ
>WENV180695910
ODCN01000038
[ODCN] human metagenome; G_DNA_Supragingival plaque
1632
1716
+
Leu
TAG
[ENA]
¢þ
>WENV180695916
ODCN01000143
[ODCN] human metagenome; G_DNA_Supragingival plaque
1643
1570
-
Gly
TCC
[ENA]
¢þ
>WENV180695915
ODCN01000063
[ODCN] human metagenome; G_DNA_Supragingival plaque
1966
2053
+
Ser
CGA
[ENA]
¢þ
>WENV180695911
ODCN01000038
[ODCN] human metagenome; G_DNA_Supragingival plaque
2093
2168
+
Arg
TCG
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
BACK