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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA gene List
[ODDC] human metagenome; G_DNA_R_Retroauricular crease
HIT:
62 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV180697226
ODDC01006125
[ODDC] human metagenome; G_DNA_R_Retroauricular crease
31
104
+
Val
CAC
[ENA]
¢þ
>WENV180697236
ODDC01009834
[ODDC] human metagenome; G_DNA_R_Retroauricular crease
33
106
+
Gln
TTG
[ENA]
¢þ
>WENV180697218
ODDC01002415
[ODDC] human metagenome; G_DNA_R_Retroauricular crease
36
108
+
Val
GAC
[ENA]
¢þ
>WENV180697228
ODDC01006723
[ODDC] human metagenome; G_DNA_R_Retroauricular crease
43
117
+
Glu
TTC
[ENA]
¢þ
>WENV180697203
ODDC01001199
[ODDC] human metagenome; G_DNA_R_Retroauricular crease
75
157
+
Tyr
GTA
[ENA]
¢þ
>WENV180697213
ODDC01001582
[ODDC] human metagenome; G_DNA_R_Retroauricular crease
81
7
-
Val
TAC
[ENA]
¢þ
>WENV180697233
ODDC01008646
[ODDC] human metagenome; G_DNA_R_Retroauricular crease
92
167
+
Thr
CGT
[ENA]
¢þ
>WENV180697235
ODDC01009597
[ODDC] human metagenome; G_DNA_R_Retroauricular crease
101
25
-
fMet
CAT
[ENA]
¢þ
>WENV180697221
ODDC01002634
[ODDC] human metagenome; G_DNA_R_Retroauricular crease
101
28
-
Arg
ACG
[ENA]
¢þ
>WENV180697232
ODDC01008183
[ODDC] human metagenome; G_DNA_R_Retroauricular crease
110
34
-
Arg
ACG
[ENA]
¢þ
>WENV180697237
ODDC01009834
[ODDC] human metagenome; G_DNA_R_Retroauricular crease
118
190
+
Cys
GCA
[ENA]
¢þ
>WENV180697199
ODDC01000726
[ODDC] human metagenome; G_DNA_R_Retroauricular crease
120
45
-
Glu
TTC
[ENA]
¢þ
>WENV180697229
ODDC01006723
[ODDC] human metagenome; G_DNA_R_Retroauricular crease
122
197
+
Val
TAC
[ENA]
¢þ
>WENV180697208
ODDC01001346
[ODDC] human metagenome; G_DNA_R_Retroauricular crease
129
58
-
Cys
GCA
[ENA]
¢þ
>WENV180697176
ODDC01000023
[ODDC] human metagenome; G_DNA_R_Retroauricular crease
135
207
+
Asn
GTT
[ENA]
¢þ
>WENV180697230
ODDC01007775
[ODDC] human metagenome; G_DNA_R_Retroauricular crease
138
64
-
Pro
GGG
[ENA]
¢þ
>WENV180697234
ODDC01008728
[ODDC] human metagenome; G_DNA_R_Retroauricular crease
146
73
-
Gly
TCC
[ENA]
¢þ
>WENV180697215
ODDC01001721
[ODDC] human metagenome; G_DNA_R_Retroauricular crease
173
247
+
Ala
TGC
[ENA]
¢þ
>WENV180697220
ODDC01002602
[ODDC] human metagenome; G_DNA_R_Retroauricular crease
178
253
+
Thr
TGT
[ENA]
¢þ
>WENV180697227
ODDC01006503
[ODDC] human metagenome; G_DNA_R_Retroauricular crease
180
88
-
Ser
TGA
[ENA]
¢þ
>WENV180697191
ODDC01000429
[ODDC] human metagenome; G_DNA_R_Retroauricular crease
196
122
-
Ala
TGC
[ENA]
¢þ
>WENV180697231
ODDC01008183
[ODDC] human metagenome; G_DNA_R_Retroauricular crease
211
123
-
Leu
TAA
[ENA]
¢þ
>WENV180697201
ODDC01001032
[ODDC] human metagenome; G_DNA_R_Retroauricular crease
217
290
+
Trp
CCA
[ENA]
¢þ
>WENV180697225
ODDC01003947
[ODDC] human metagenome; G_DNA_R_Retroauricular crease
226
142
-
Leu
TAG
[ENA]
¢þ
>WENV180697207
ODDC01001346
[ODDC] human metagenome; G_DNA_R_Retroauricular crease
230
157
-
Gly
GCC
[ENA]
¢þ
>WENV180697223
ODDC01003389
[ODDC] human metagenome; G_DNA_R_Retroauricular crease
231
303
+
Thr
GGT
[ENA]
¢þ
>WENV180697224
ODDC01003907
[ODDC] human metagenome; G_DNA_R_Retroauricular crease
234
310
+
Ile2
CAT
[ENA]
¢þ
>WENV180697210
ODDC01001403
[ODDC] human metagenome; G_DNA_R_Retroauricular crease
244
169
-
Glu
CTC
[ENA]
¢þ
>WENV180697211
ODDC01001408
[ODDC] human metagenome; G_DNA_R_Retroauricular crease
263
346
+
Leu
CAG
[ENA]
¢þ
>WENV180697198
ODDC01000726
[ODDC] human metagenome; G_DNA_R_Retroauricular crease
274
199
-
Ala
GGC
[ENA]
¢þ
>WENV180697219
ODDC01002487
[ODDC] human metagenome; G_DNA_R_Retroauricular crease
279
364
+
Ser
TGA
[ENA]
¢þ
>WENV180697222
ODDC01002917
[ODDC] human metagenome; G_DNA_R_Retroauricular crease
296
370
+
Lys
CTT
[ENA]
¢þ
>WENV180697197
ODDC01000693
[ODDC] human metagenome; G_DNA_R_Retroauricular crease
315
239
-
Pro
CGG
[ENA]
¢þ
>WENV180697217
ODDC01001853
[ODDC] human metagenome; G_DNA_R_Retroauricular crease
334
249
-
Ser
TGA
[ENA]
¢þ
>WENV180697204
ODDC01001199
[ODDC] human metagenome; G_DNA_R_Retroauricular crease
358
431
+
Thr
GGT
[ENA]
¢þ
>WENV180697206
ODDC01001268
[ODDC] human metagenome; G_DNA_R_Retroauricular crease
366
441
+
Trp
CCA
[ENA]
¢þ
>WENV180697181
ODDC01000061
[ODDC] human metagenome; G_DNA_R_Retroauricular crease
381
311
-
Met
CAT
[ENA]
¢þ
>WENV180697186
ODDC01000316
[ODDC] human metagenome; G_DNA_R_Retroauricular crease
384
458
+
Asp
GTC
[ENA]
¢þ
>WENV180697216
ODDC01001853
[ODDC] human metagenome; G_DNA_R_Retroauricular crease
440
358
-
Tyr
GTA
[ENA]
¢þ
>WENV180697209
ODDC01001403
[ODDC] human metagenome; G_DNA_R_Retroauricular crease
452
380
-
Gln
CTG
[ENA]
¢þ
>WENV180697200
ODDC01001011
[ODDC] human metagenome; G_DNA_R_Retroauricular crease
469
393
-
fMet
CAT
[ENA]
¢þ
>WENV180697202
ODDC01001097
[ODDC] human metagenome; G_DNA_R_Retroauricular crease
484
557
+
Asn
GTT
[ENA]
¢þ
>WENV180697214
ODDC01001663
[ODDC] human metagenome; G_DNA_R_Retroauricular crease
492
407
-
Ser
GGA
[ENA]
¢þ
>WENV180697205
ODDC01001199
[ODDC] human metagenome; G_DNA_R_Retroauricular crease
496
570
+
Met
CAT
[ENA]
¢þ
>WENV180697187
ODDC01000316
[ODDC] human metagenome; G_DNA_R_Retroauricular crease
519
594
+
Phe
GAA
[ENA]
¢þ
>WENV180697189
ODDC01000353
[ODDC] human metagenome; G_DNA_R_Retroauricular crease
529
604
+
Lys
TTT
[ENA]
¢þ
>WENV180697212
ODDC01001520
[ODDC] human metagenome; G_DNA_R_Retroauricular crease
545
470
-
Asn
GTT
[ENA]
¢þ
>WENV180697179
ODDC01000059
[ODDC] human metagenome; G_DNA_R_Retroauricular crease
548
618
+
Val
TAC
[ENA]
¢þ
>WENV180697196
ODDC01000587
[ODDC] human metagenome; G_DNA_R_Retroauricular crease
555
481
-
Lys
TTT
[ENA]
¢þ
>WENV180697194
ODDC01000538
[ODDC] human metagenome; G_DNA_R_Retroauricular crease
632
715
+
Leu
TAG
[ENA]
¢þ
>WENV180697193
ODDC01000494
[ODDC] human metagenome; G_DNA_R_Retroauricular crease
709
782
+
Ala
GGC
[ENA]
¢þ
>WENV180697195
ODDC01000553
[ODDC] human metagenome; G_DNA_R_Retroauricular crease
815
890
+
His
GTG
[ENA]
¢þ
>WENV180697184
ODDC01000151
[ODDC] human metagenome; G_DNA_R_Retroauricular crease
941
1016
+
Arg
TCT
[ENA]
¢þ
>WENV180697192
ODDC01000482
[ODDC] human metagenome; G_DNA_R_Retroauricular crease
1069
996
-
Arg
CCT
[ENA]
¢þ
>WENV180697190
ODDC01000353
[ODDC] human metagenome; G_DNA_R_Retroauricular crease
1209
1136
-
Thr
TGT
[ENA]
¢þ
>WENV180697188
ODDC01000318
[ODDC] human metagenome; G_DNA_R_Retroauricular crease
1263
1188
-
Ala
TGC
[ENA]
¢þ
>WENV180697185
ODDC01000219
[ODDC] human metagenome; G_DNA_R_Retroauricular crease
1359
1284
-
Thr
CGT
[ENA]
¢þ
>WENV180697180
ODDC01000061
[ODDC] human metagenome; G_DNA_R_Retroauricular crease
1607
1680
+
His
GTG
[ENA]
¢þ
>WENV180697177
ODDC01000038
[ODDC] human metagenome; G_DNA_R_Retroauricular crease
1632
1716
+
Leu
TAG
[ENA]
¢þ
>WENV180697183
ODDC01000143
[ODDC] human metagenome; G_DNA_R_Retroauricular crease
1643
1570
-
Gly
TCC
[ENA]
¢þ
>WENV180697182
ODDC01000063
[ODDC] human metagenome; G_DNA_R_Retroauricular crease
1966
2053
+
Ser
CGA
[ENA]
¢þ
>WENV180697178
ODDC01000038
[ODDC] human metagenome; G_DNA_R_Retroauricular crease
2093
2168
+
Arg
TCG
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
BACK