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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
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|
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HOW TO USE
tRNA gene List
[ODDF] human metagenome; G_DNA_Palatine Tonsils
HIT:
62 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV180698292
ODDF01006125
[ODDF] human metagenome; G_DNA_Palatine Tonsils
31
104
+
Val
CAC
[ENA]
¢þ
>WENV180698302
ODDF01009834
[ODDF] human metagenome; G_DNA_Palatine Tonsils
33
106
+
Gln
TTG
[ENA]
¢þ
>WENV180698284
ODDF01002415
[ODDF] human metagenome; G_DNA_Palatine Tonsils
36
108
+
Val
GAC
[ENA]
¢þ
>WENV180698294
ODDF01006723
[ODDF] human metagenome; G_DNA_Palatine Tonsils
43
117
+
Glu
TTC
[ENA]
¢þ
>WENV180698269
ODDF01001199
[ODDF] human metagenome; G_DNA_Palatine Tonsils
75
157
+
Tyr
GTA
[ENA]
¢þ
>WENV180698279
ODDF01001582
[ODDF] human metagenome; G_DNA_Palatine Tonsils
81
7
-
Val
TAC
[ENA]
¢þ
>WENV180698299
ODDF01008646
[ODDF] human metagenome; G_DNA_Palatine Tonsils
92
167
+
Thr
CGT
[ENA]
¢þ
>WENV180698301
ODDF01009597
[ODDF] human metagenome; G_DNA_Palatine Tonsils
101
25
-
fMet
CAT
[ENA]
¢þ
>WENV180698287
ODDF01002634
[ODDF] human metagenome; G_DNA_Palatine Tonsils
101
28
-
Arg
ACG
[ENA]
¢þ
>WENV180698298
ODDF01008183
[ODDF] human metagenome; G_DNA_Palatine Tonsils
110
34
-
Arg
ACG
[ENA]
¢þ
>WENV180698303
ODDF01009834
[ODDF] human metagenome; G_DNA_Palatine Tonsils
118
190
+
Cys
GCA
[ENA]
¢þ
>WENV180698265
ODDF01000726
[ODDF] human metagenome; G_DNA_Palatine Tonsils
120
45
-
Glu
TTC
[ENA]
¢þ
>WENV180698295
ODDF01006723
[ODDF] human metagenome; G_DNA_Palatine Tonsils
122
197
+
Val
TAC
[ENA]
¢þ
>WENV180698274
ODDF01001346
[ODDF] human metagenome; G_DNA_Palatine Tonsils
129
58
-
Cys
GCA
[ENA]
¢þ
>WENV180698242
ODDF01000023
[ODDF] human metagenome; G_DNA_Palatine Tonsils
135
207
+
Asn
GTT
[ENA]
¢þ
>WENV180698296
ODDF01007775
[ODDF] human metagenome; G_DNA_Palatine Tonsils
138
64
-
Pro
GGG
[ENA]
¢þ
>WENV180698300
ODDF01008728
[ODDF] human metagenome; G_DNA_Palatine Tonsils
146
73
-
Gly
TCC
[ENA]
¢þ
>WENV180698281
ODDF01001721
[ODDF] human metagenome; G_DNA_Palatine Tonsils
173
247
+
Ala
TGC
[ENA]
¢þ
>WENV180698286
ODDF01002602
[ODDF] human metagenome; G_DNA_Palatine Tonsils
178
253
+
Thr
TGT
[ENA]
¢þ
>WENV180698293
ODDF01006503
[ODDF] human metagenome; G_DNA_Palatine Tonsils
180
88
-
Ser
TGA
[ENA]
¢þ
>WENV180698257
ODDF01000429
[ODDF] human metagenome; G_DNA_Palatine Tonsils
196
122
-
Ala
TGC
[ENA]
¢þ
>WENV180698297
ODDF01008183
[ODDF] human metagenome; G_DNA_Palatine Tonsils
211
123
-
Leu
TAA
[ENA]
¢þ
>WENV180698267
ODDF01001032
[ODDF] human metagenome; G_DNA_Palatine Tonsils
217
290
+
Trp
CCA
[ENA]
¢þ
>WENV180698291
ODDF01003947
[ODDF] human metagenome; G_DNA_Palatine Tonsils
226
142
-
Leu
TAG
[ENA]
¢þ
>WENV180698273
ODDF01001346
[ODDF] human metagenome; G_DNA_Palatine Tonsils
230
157
-
Gly
GCC
[ENA]
¢þ
>WENV180698289
ODDF01003389
[ODDF] human metagenome; G_DNA_Palatine Tonsils
231
303
+
Thr
GGT
[ENA]
¢þ
>WENV180698290
ODDF01003907
[ODDF] human metagenome; G_DNA_Palatine Tonsils
234
310
+
Ile2
CAT
[ENA]
¢þ
>WENV180698276
ODDF01001403
[ODDF] human metagenome; G_DNA_Palatine Tonsils
244
169
-
Glu
CTC
[ENA]
¢þ
>WENV180698277
ODDF01001408
[ODDF] human metagenome; G_DNA_Palatine Tonsils
263
346
+
Leu
CAG
[ENA]
¢þ
>WENV180698264
ODDF01000726
[ODDF] human metagenome; G_DNA_Palatine Tonsils
274
199
-
Ala
GGC
[ENA]
¢þ
>WENV180698285
ODDF01002487
[ODDF] human metagenome; G_DNA_Palatine Tonsils
279
364
+
Ser
TGA
[ENA]
¢þ
>WENV180698288
ODDF01002917
[ODDF] human metagenome; G_DNA_Palatine Tonsils
296
370
+
Lys
CTT
[ENA]
¢þ
>WENV180698263
ODDF01000693
[ODDF] human metagenome; G_DNA_Palatine Tonsils
315
239
-
Pro
CGG
[ENA]
¢þ
>WENV180698283
ODDF01001853
[ODDF] human metagenome; G_DNA_Palatine Tonsils
334
249
-
Ser
TGA
[ENA]
¢þ
>WENV180698270
ODDF01001199
[ODDF] human metagenome; G_DNA_Palatine Tonsils
358
431
+
Thr
GGT
[ENA]
¢þ
>WENV180698272
ODDF01001268
[ODDF] human metagenome; G_DNA_Palatine Tonsils
366
441
+
Trp
CCA
[ENA]
¢þ
>WENV180698247
ODDF01000061
[ODDF] human metagenome; G_DNA_Palatine Tonsils
381
311
-
Met
CAT
[ENA]
¢þ
>WENV180698252
ODDF01000316
[ODDF] human metagenome; G_DNA_Palatine Tonsils
384
458
+
Asp
GTC
[ENA]
¢þ
>WENV180698282
ODDF01001853
[ODDF] human metagenome; G_DNA_Palatine Tonsils
440
358
-
Tyr
GTA
[ENA]
¢þ
>WENV180698275
ODDF01001403
[ODDF] human metagenome; G_DNA_Palatine Tonsils
452
380
-
Gln
CTG
[ENA]
¢þ
>WENV180698266
ODDF01001011
[ODDF] human metagenome; G_DNA_Palatine Tonsils
469
393
-
fMet
CAT
[ENA]
¢þ
>WENV180698268
ODDF01001097
[ODDF] human metagenome; G_DNA_Palatine Tonsils
484
557
+
Asn
GTT
[ENA]
¢þ
>WENV180698280
ODDF01001663
[ODDF] human metagenome; G_DNA_Palatine Tonsils
492
407
-
Ser
GGA
[ENA]
¢þ
>WENV180698271
ODDF01001199
[ODDF] human metagenome; G_DNA_Palatine Tonsils
496
570
+
Met
CAT
[ENA]
¢þ
>WENV180698253
ODDF01000316
[ODDF] human metagenome; G_DNA_Palatine Tonsils
519
594
+
Phe
GAA
[ENA]
¢þ
>WENV180698255
ODDF01000353
[ODDF] human metagenome; G_DNA_Palatine Tonsils
529
604
+
Lys
TTT
[ENA]
¢þ
>WENV180698278
ODDF01001520
[ODDF] human metagenome; G_DNA_Palatine Tonsils
545
470
-
Asn
GTT
[ENA]
¢þ
>WENV180698245
ODDF01000059
[ODDF] human metagenome; G_DNA_Palatine Tonsils
548
618
+
Val
TAC
[ENA]
¢þ
>WENV180698262
ODDF01000587
[ODDF] human metagenome; G_DNA_Palatine Tonsils
555
481
-
Lys
TTT
[ENA]
¢þ
>WENV180698260
ODDF01000538
[ODDF] human metagenome; G_DNA_Palatine Tonsils
632
715
+
Leu
TAG
[ENA]
¢þ
>WENV180698259
ODDF01000494
[ODDF] human metagenome; G_DNA_Palatine Tonsils
709
782
+
Ala
GGC
[ENA]
¢þ
>WENV180698261
ODDF01000553
[ODDF] human metagenome; G_DNA_Palatine Tonsils
815
890
+
His
GTG
[ENA]
¢þ
>WENV180698250
ODDF01000151
[ODDF] human metagenome; G_DNA_Palatine Tonsils
941
1016
+
Arg
TCT
[ENA]
¢þ
>WENV180698258
ODDF01000482
[ODDF] human metagenome; G_DNA_Palatine Tonsils
1069
996
-
Arg
CCT
[ENA]
¢þ
>WENV180698256
ODDF01000353
[ODDF] human metagenome; G_DNA_Palatine Tonsils
1209
1136
-
Thr
TGT
[ENA]
¢þ
>WENV180698254
ODDF01000318
[ODDF] human metagenome; G_DNA_Palatine Tonsils
1263
1188
-
Ala
TGC
[ENA]
¢þ
>WENV180698251
ODDF01000219
[ODDF] human metagenome; G_DNA_Palatine Tonsils
1359
1284
-
Thr
CGT
[ENA]
¢þ
>WENV180698246
ODDF01000061
[ODDF] human metagenome; G_DNA_Palatine Tonsils
1607
1680
+
His
GTG
[ENA]
¢þ
>WENV180698243
ODDF01000038
[ODDF] human metagenome; G_DNA_Palatine Tonsils
1632
1716
+
Leu
TAG
[ENA]
¢þ
>WENV180698249
ODDF01000143
[ODDF] human metagenome; G_DNA_Palatine Tonsils
1643
1570
-
Gly
TCC
[ENA]
¢þ
>WENV180698248
ODDF01000063
[ODDF] human metagenome; G_DNA_Palatine Tonsils
1966
2053
+
Ser
CGA
[ENA]
¢þ
>WENV180698244
ODDF01000038
[ODDF] human metagenome; G_DNA_Palatine Tonsils
2093
2168
+
Arg
TCG
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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