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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
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HOW TO USE
tRNA gene List
[ODDG] human metagenome; G_DNA_Tongue dorsum
HIT:
62 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV180698354
ODDG01006125
[ODDG] human metagenome; G_DNA_Tongue dorsum
31
104
+
Val
CAC
[ENA]
¢þ
>WENV180698364
ODDG01009834
[ODDG] human metagenome; G_DNA_Tongue dorsum
33
106
+
Gln
TTG
[ENA]
¢þ
>WENV180698346
ODDG01002415
[ODDG] human metagenome; G_DNA_Tongue dorsum
36
108
+
Val
GAC
[ENA]
¢þ
>WENV180698356
ODDG01006723
[ODDG] human metagenome; G_DNA_Tongue dorsum
43
117
+
Glu
TTC
[ENA]
¢þ
>WENV180698331
ODDG01001199
[ODDG] human metagenome; G_DNA_Tongue dorsum
75
157
+
Tyr
GTA
[ENA]
¢þ
>WENV180698341
ODDG01001582
[ODDG] human metagenome; G_DNA_Tongue dorsum
81
7
-
Val
TAC
[ENA]
¢þ
>WENV180698361
ODDG01008646
[ODDG] human metagenome; G_DNA_Tongue dorsum
92
167
+
Thr
CGT
[ENA]
¢þ
>WENV180698363
ODDG01009597
[ODDG] human metagenome; G_DNA_Tongue dorsum
101
25
-
fMet
CAT
[ENA]
¢þ
>WENV180698349
ODDG01002634
[ODDG] human metagenome; G_DNA_Tongue dorsum
101
28
-
Arg
ACG
[ENA]
¢þ
>WENV180698360
ODDG01008183
[ODDG] human metagenome; G_DNA_Tongue dorsum
110
34
-
Arg
ACG
[ENA]
¢þ
>WENV180698365
ODDG01009834
[ODDG] human metagenome; G_DNA_Tongue dorsum
118
190
+
Cys
GCA
[ENA]
¢þ
>WENV180698327
ODDG01000726
[ODDG] human metagenome; G_DNA_Tongue dorsum
120
45
-
Glu
TTC
[ENA]
¢þ
>WENV180698357
ODDG01006723
[ODDG] human metagenome; G_DNA_Tongue dorsum
122
197
+
Val
TAC
[ENA]
¢þ
>WENV180698336
ODDG01001346
[ODDG] human metagenome; G_DNA_Tongue dorsum
129
58
-
Cys
GCA
[ENA]
¢þ
>WENV180698304
ODDG01000023
[ODDG] human metagenome; G_DNA_Tongue dorsum
135
207
+
Asn
GTT
[ENA]
¢þ
>WENV180698358
ODDG01007775
[ODDG] human metagenome; G_DNA_Tongue dorsum
138
64
-
Pro
GGG
[ENA]
¢þ
>WENV180698362
ODDG01008728
[ODDG] human metagenome; G_DNA_Tongue dorsum
146
73
-
Gly
TCC
[ENA]
¢þ
>WENV180698343
ODDG01001721
[ODDG] human metagenome; G_DNA_Tongue dorsum
173
247
+
Ala
TGC
[ENA]
¢þ
>WENV180698348
ODDG01002602
[ODDG] human metagenome; G_DNA_Tongue dorsum
178
253
+
Thr
TGT
[ENA]
¢þ
>WENV180698355
ODDG01006503
[ODDG] human metagenome; G_DNA_Tongue dorsum
180
88
-
Ser
TGA
[ENA]
¢þ
>WENV180698319
ODDG01000429
[ODDG] human metagenome; G_DNA_Tongue dorsum
196
122
-
Ala
TGC
[ENA]
¢þ
>WENV180698359
ODDG01008183
[ODDG] human metagenome; G_DNA_Tongue dorsum
211
123
-
Leu
TAA
[ENA]
¢þ
>WENV180698329
ODDG01001032
[ODDG] human metagenome; G_DNA_Tongue dorsum
217
290
+
Trp
CCA
[ENA]
¢þ
>WENV180698353
ODDG01003947
[ODDG] human metagenome; G_DNA_Tongue dorsum
226
142
-
Leu
TAG
[ENA]
¢þ
>WENV180698335
ODDG01001346
[ODDG] human metagenome; G_DNA_Tongue dorsum
230
157
-
Gly
GCC
[ENA]
¢þ
>WENV180698351
ODDG01003389
[ODDG] human metagenome; G_DNA_Tongue dorsum
231
303
+
Thr
GGT
[ENA]
¢þ
>WENV180698352
ODDG01003907
[ODDG] human metagenome; G_DNA_Tongue dorsum
234
310
+
Ile2
CAT
[ENA]
¢þ
>WENV180698338
ODDG01001403
[ODDG] human metagenome; G_DNA_Tongue dorsum
244
169
-
Glu
CTC
[ENA]
¢þ
>WENV180698339
ODDG01001408
[ODDG] human metagenome; G_DNA_Tongue dorsum
263
346
+
Leu
CAG
[ENA]
¢þ
>WENV180698326
ODDG01000726
[ODDG] human metagenome; G_DNA_Tongue dorsum
274
199
-
Ala
GGC
[ENA]
¢þ
>WENV180698347
ODDG01002487
[ODDG] human metagenome; G_DNA_Tongue dorsum
279
364
+
Ser
TGA
[ENA]
¢þ
>WENV180698350
ODDG01002917
[ODDG] human metagenome; G_DNA_Tongue dorsum
296
370
+
Lys
CTT
[ENA]
¢þ
>WENV180698325
ODDG01000693
[ODDG] human metagenome; G_DNA_Tongue dorsum
315
239
-
Pro
CGG
[ENA]
¢þ
>WENV180698345
ODDG01001853
[ODDG] human metagenome; G_DNA_Tongue dorsum
334
249
-
Ser
TGA
[ENA]
¢þ
>WENV180698332
ODDG01001199
[ODDG] human metagenome; G_DNA_Tongue dorsum
358
431
+
Thr
GGT
[ENA]
¢þ
>WENV180698334
ODDG01001268
[ODDG] human metagenome; G_DNA_Tongue dorsum
366
441
+
Trp
CCA
[ENA]
¢þ
>WENV180698309
ODDG01000061
[ODDG] human metagenome; G_DNA_Tongue dorsum
381
311
-
Met
CAT
[ENA]
¢þ
>WENV180698314
ODDG01000316
[ODDG] human metagenome; G_DNA_Tongue dorsum
384
458
+
Asp
GTC
[ENA]
¢þ
>WENV180698344
ODDG01001853
[ODDG] human metagenome; G_DNA_Tongue dorsum
440
358
-
Tyr
GTA
[ENA]
¢þ
>WENV180698337
ODDG01001403
[ODDG] human metagenome; G_DNA_Tongue dorsum
452
380
-
Gln
CTG
[ENA]
¢þ
>WENV180698328
ODDG01001011
[ODDG] human metagenome; G_DNA_Tongue dorsum
469
393
-
fMet
CAT
[ENA]
¢þ
>WENV180698330
ODDG01001097
[ODDG] human metagenome; G_DNA_Tongue dorsum
484
557
+
Asn
GTT
[ENA]
¢þ
>WENV180698342
ODDG01001663
[ODDG] human metagenome; G_DNA_Tongue dorsum
492
407
-
Ser
GGA
[ENA]
¢þ
>WENV180698333
ODDG01001199
[ODDG] human metagenome; G_DNA_Tongue dorsum
496
570
+
Met
CAT
[ENA]
¢þ
>WENV180698315
ODDG01000316
[ODDG] human metagenome; G_DNA_Tongue dorsum
519
594
+
Phe
GAA
[ENA]
¢þ
>WENV180698317
ODDG01000353
[ODDG] human metagenome; G_DNA_Tongue dorsum
529
604
+
Lys
TTT
[ENA]
¢þ
>WENV180698340
ODDG01001520
[ODDG] human metagenome; G_DNA_Tongue dorsum
545
470
-
Asn
GTT
[ENA]
¢þ
>WENV180698307
ODDG01000059
[ODDG] human metagenome; G_DNA_Tongue dorsum
548
618
+
Val
TAC
[ENA]
¢þ
>WENV180698324
ODDG01000587
[ODDG] human metagenome; G_DNA_Tongue dorsum
555
481
-
Lys
TTT
[ENA]
¢þ
>WENV180698322
ODDG01000538
[ODDG] human metagenome; G_DNA_Tongue dorsum
632
715
+
Leu
TAG
[ENA]
¢þ
>WENV180698321
ODDG01000494
[ODDG] human metagenome; G_DNA_Tongue dorsum
709
782
+
Ala
GGC
[ENA]
¢þ
>WENV180698323
ODDG01000553
[ODDG] human metagenome; G_DNA_Tongue dorsum
815
890
+
His
GTG
[ENA]
¢þ
>WENV180698312
ODDG01000151
[ODDG] human metagenome; G_DNA_Tongue dorsum
941
1016
+
Arg
TCT
[ENA]
¢þ
>WENV180698320
ODDG01000482
[ODDG] human metagenome; G_DNA_Tongue dorsum
1069
996
-
Arg
CCT
[ENA]
¢þ
>WENV180698318
ODDG01000353
[ODDG] human metagenome; G_DNA_Tongue dorsum
1209
1136
-
Thr
TGT
[ENA]
¢þ
>WENV180698316
ODDG01000318
[ODDG] human metagenome; G_DNA_Tongue dorsum
1263
1188
-
Ala
TGC
[ENA]
¢þ
>WENV180698313
ODDG01000219
[ODDG] human metagenome; G_DNA_Tongue dorsum
1359
1284
-
Thr
CGT
[ENA]
¢þ
>WENV180698308
ODDG01000061
[ODDG] human metagenome; G_DNA_Tongue dorsum
1607
1680
+
His
GTG
[ENA]
¢þ
>WENV180698305
ODDG01000038
[ODDG] human metagenome; G_DNA_Tongue dorsum
1632
1716
+
Leu
TAG
[ENA]
¢þ
>WENV180698311
ODDG01000143
[ODDG] human metagenome; G_DNA_Tongue dorsum
1643
1570
-
Gly
TCC
[ENA]
¢þ
>WENV180698310
ODDG01000063
[ODDG] human metagenome; G_DNA_Tongue dorsum
1966
2053
+
Ser
CGA
[ENA]
¢þ
>WENV180698306
ODDG01000038
[ODDG] human metagenome; G_DNA_Tongue dorsum
2093
2168
+
Arg
TCG
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
BACK