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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA gene List
[ODHA] human metagenome; G_DNA_Posterior fornix
HIT:
71 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV180735515
ODHA01000636
[ODHA] human metagenome; G_DNA_Posterior fornix
40
111
+
Arg
CCG
[ENA]
¢þ
>WENV180735476
ODHA01000060
[ODHA] human metagenome; G_DNA_Posterior fornix
60
134
+
Val
TAC
[ENA]
¢þ
>WENV180735516
ODHA01001081
[ODHA] human metagenome; G_DNA_Posterior fornix
66
140
+
Asn
GTT
[ENA]
¢þ
>WENV180735471
ODHA01000018
[ODHA] human metagenome; G_DNA_Posterior fornix
66
140
+
Asn
GTT
[ENA]
¢þ
>WENV180735523
ODHA01004781
[ODHA] human metagenome; G_DNA_Posterior fornix
79
5
-
Gly
GCC
[ENA]
¢þ
>WENV180735522
ODHA01002842
[ODHA] human metagenome; G_DNA_Posterior fornix
93
5
-
Ser
TGA
[ENA]
¢þ
>WENV180735512
ODHA01000322
[ODHA] human metagenome; G_DNA_Posterior fornix
102
29
-
Glu
CTC
[ENA]
¢þ
>WENV180735519
ODHA01002606
[ODHA] human metagenome; G_DNA_Posterior fornix
131
216
+
Leu
CAG
[ENA]
¢þ
>WENV180735477
ODHA01000060
[ODHA] human metagenome; G_DNA_Posterior fornix
138
210
+
Lys
TTT
[ENA]
¢þ
>WENV180735518
ODHA01001782
[ODHA] human metagenome; G_DNA_Posterior fornix
148
74
-
Ala
TGC
[ENA]
¢þ
>WENV180735521
ODHA01002842
[ODHA] human metagenome; G_DNA_Posterior fornix
174
99
-
Lys
TTT
[ENA]
¢þ
>WENV180735478
ODHA01000060
[ODHA] human metagenome; G_DNA_Posterior fornix
223
306
+
Leu
TAG
[ENA]
¢þ
>WENV180735513
ODHA01000570
[ODHA] human metagenome; G_DNA_Posterior fornix
246
173
-
Asn
GTT
[ENA]
¢þ
>WENV180735520
ODHA01002842
[ODHA] human metagenome; G_DNA_Posterior fornix
255
179
-
Gln
TTG
[ENA]
¢þ
>WENV180735517
ODHA01001782
[ODHA] human metagenome; G_DNA_Posterior fornix
278
204
-
Ile
GAT
[ENA]
¢þ
>WENV180735479
ODHA01000060
[ODHA] human metagenome; G_DNA_Posterior fornix
329
403
+
Thr
TGT
[ENA]
¢þ
>WENV180735480
ODHA01000060
[ODHA] human metagenome; G_DNA_Posterior fornix
413
484
+
Gly
GCC
[ENA]
¢þ
>WENV180735481
ODHA01000060
[ODHA] human metagenome; G_DNA_Posterior fornix
496
581
+
Leu
TAA
[ENA]
¢þ
>WENV180735511
ODHA01000279
[ODHA] human metagenome; G_DNA_Posterior fornix
571
643
+
Thr
GGT
[ENA]
¢þ
>WENV180735482
ODHA01000060
[ODHA] human metagenome; G_DNA_Posterior fornix
590
664
+
Arg
ACG
[ENA]
¢þ
>WENV180735514
ODHA01000595
[ODHA] human metagenome; G_DNA_Posterior fornix
602
529
-
Pro
CGG
[ENA]
¢þ
>WENV180735483
ODHA01000060
[ODHA] human metagenome; G_DNA_Posterior fornix
672
745
+
Pro
TGG
[ENA]
¢þ
>WENV180735484
ODHA01000060
[ODHA] human metagenome; G_DNA_Posterior fornix
775
850
+
Met
CAT
[ENA]
¢þ
>WENV180735485
ODHA01000060
[ODHA] human metagenome; G_DNA_Posterior fornix
862
937
+
Ile2
CAT
[ENA]
¢þ
>WENV180735470
ODHA01000011
[ODHA] human metagenome; G_DNA_Posterior fornix
922
852
-
Gly
CCC
[ENA]
¢þ
>WENV180735486
ODHA01000060
[ODHA] human metagenome; G_DNA_Posterior fornix
959
1034
+
fMet
CAT
[ENA]
¢þ
>WENV180735487
ODHA01000060
[ODHA] human metagenome; G_DNA_Posterior fornix
1036
1111
+
Asp
GTC
[ENA]
¢þ
>WENV180735488
ODHA01000060
[ODHA] human metagenome; G_DNA_Posterior fornix
1116
1190
+
Phe
GAA
[ENA]
¢þ
>WENV180735489
ODHA01000060
[ODHA] human metagenome; G_DNA_Posterior fornix
1284
1360
+
Ile
GAT
[ENA]
¢þ
>WENV180735505
ODHA01000087
[ODHA] human metagenome; G_DNA_Posterior fornix
1302
1214
-
Ser
CGA
[ENA]
¢þ
>WENV180735490
ODHA01000060
[ODHA] human metagenome; G_DNA_Posterior fornix
1362
1452
+
Ser
GCT
[ENA]
¢þ
>WENV180735510
ODHA01000120
[ODHA] human metagenome; G_DNA_Posterior fornix
1974
2048
+
Thr
AGT
[ENA]
¢þ
>WENV180735491
ODHA01000060
[ODHA] human metagenome; G_DNA_Posterior fornix
2207
2280
+
Glu
TTC
[ENA]
¢þ
>WENV180735503
ODHA01000070
[ODHA] human metagenome; G_DNA_Posterior fornix
2301
2215
-
Leu
CAG
[ENA]
¢þ
>WENV180735492
ODHA01000060
[ODHA] human metagenome; G_DNA_Posterior fornix
2313
2399
+
Ser
TGA
[ENA]
¢þ
>WENV180735493
ODHA01000060
[ODHA] human metagenome; G_DNA_Posterior fornix
2410
2485
+
fMet
CAT
[ENA]
¢þ
>WENV180735494
ODHA01000060
[ODHA] human metagenome; G_DNA_Posterior fornix
2487
2562
+
Asp
GTC
[ENA]
¢þ
>WENV180735495
ODHA01000060
[ODHA] human metagenome; G_DNA_Posterior fornix
2567
2642
+
Phe
GAA
[ENA]
¢þ
>WENV180735496
ODHA01000060
[ODHA] human metagenome; G_DNA_Posterior fornix
2646
2729
+
Tyr
GTA
[ENA]
¢þ
>WENV180735497
ODHA01000060
[ODHA] human metagenome; G_DNA_Posterior fornix
2732
2804
+
Trp
CCA
[ENA]
¢þ
>WENV180735498
ODHA01000060
[ODHA] human metagenome; G_DNA_Posterior fornix
2816
2889
+
His
GTG
[ENA]
¢þ
>WENV180735499
ODHA01000060
[ODHA] human metagenome; G_DNA_Posterior fornix
2895
2968
+
Gln
TTG
[ENA]
¢þ
>WENV180735500
ODHA01000060
[ODHA] human metagenome; G_DNA_Posterior fornix
2991
3061
+
Cys
GCA
[ENA]
¢þ
>WENV180735501
ODHA01000060
[ODHA] human metagenome; G_DNA_Posterior fornix
3102
3188
+
Leu
CAA
[ENA]
¢þ
>WENV180735475
ODHA01000051
[ODHA] human metagenome; G_DNA_Posterior fornix
3484
3558
+
Arg
CCT
[ENA]
¢þ
>WENV180735467
ODHA01000004
[ODHA] human metagenome; G_DNA_Posterior fornix
4322
4396
+
Arg
ACG
[ENA]
¢þ
>WENV180735468
ODHA01000004
[ODHA] human metagenome; G_DNA_Posterior fornix
4404
4477
+
Pro
TGG
[ENA]
¢þ
>WENV180735504
ODHA01000083
[ODHA] human metagenome; G_DNA_Posterior fornix
5817
5745
-
Thr
GGT
[ENA]
¢þ
>WENV180735502
ODHA01000065
[ODHA] human metagenome; G_DNA_Posterior fornix
6760
6687
-
Arg
CCG
[ENA]
¢þ
>WENV180735458
ODHA01000003
[ODHA] human metagenome; G_DNA_Posterior fornix
7302
7377
+
Thr
CGT
[ENA]
¢þ
>WENV180735509
ODHA01000088
[ODHA] human metagenome; G_DNA_Posterior fornix
7837
7763
-
Val
TAC
[ENA]
¢þ
>WENV180735508
ODHA01000088
[ODHA] human metagenome; G_DNA_Posterior fornix
7913
7841
-
Glu
TTC
[ENA]
¢þ
>WENV180735472
ODHA01000043
[ODHA] human metagenome; G_DNA_Posterior fornix
8436
8510
+
Lys
CTT
[ENA]
¢þ
>WENV180735473
ODHA01000043
[ODHA] human metagenome; G_DNA_Posterior fornix
8980
9054
+
Lys
CTT
[ENA]
¢þ
>WENV180735507
ODHA01000088
[ODHA] human metagenome; G_DNA_Posterior fornix
9132
9040
-
Ser
GGA
[ENA]
¢þ
>WENV180735506
ODHA01000088
[ODHA] human metagenome; G_DNA_Posterior fornix
9215
9141
-
Asn
GTT
[ENA]
¢þ
>WENV180735474
ODHA01000043
[ODHA] human metagenome; G_DNA_Posterior fornix
15223
15150
-
Asn
GTT
[ENA]
¢þ
>WENV180735459
ODHA01000003
[ODHA] human metagenome; G_DNA_Posterior fornix
17652
17725
+
Gln
TTG
[ENA]
¢þ
>WENV180735457
ODHA01000002
[ODHA] human metagenome; G_DNA_Posterior fornix
27416
27344
-
Trp
CCA
[ENA]
¢þ
>WENV180735456
ODHA01000002
[ODHA] human metagenome; G_DNA_Posterior fornix
27796
27722
-
Asp
GTC
[ENA]
¢þ
>WENV180735455
ODHA01000002
[ODHA] human metagenome; G_DNA_Posterior fornix
27970
27895
-
Gln
TTG
[ENA]
¢þ
>WENV180735460
ODHA01000003
[ODHA] human metagenome; G_DNA_Posterior fornix
29687
29768
+
Tyr
GTA
[ENA]
¢þ
>WENV180735461
ODHA01000003
[ODHA] human metagenome; G_DNA_Posterior fornix
29802
29875
+
Gln
TTG
[ENA]
¢þ
>WENV180735469
ODHA01000009
[ODHA] human metagenome; G_DNA_Posterior fornix
38759
38684
-
Arg
TCT
[ENA]
¢þ
>WENV180735462
ODHA01000003
[ODHA] human metagenome; G_DNA_Posterior fornix
46817
46902
+
Leu
AAG
[ENA]
¢þ
>WENV180735463
ODHA01000003
[ODHA] human metagenome; G_DNA_Posterior fornix
64667
64754
+
Ser
TGA
[ENA]
¢þ
>WENV180735464
ODHA01000003
[ODHA] human metagenome; G_DNA_Posterior fornix
64760
64835
+
Asp
GTC
[ENA]
¢þ
>WENV180735465
ODHA01000003
[ODHA] human metagenome; G_DNA_Posterior fornix
64841
64916
+
His
GTG
[ENA]
¢þ
>WENV180735466
ODHA01000003
[ODHA] human metagenome; G_DNA_Posterior fornix
64920
64994
+
Val
TAC
[ENA]
¢þ
>WENV180735454
ODHA01000001
[ODHA] human metagenome; G_DNA_Posterior fornix
70251
70179
-
Gln
CTG
[ENA]
¢þ
>WENV180735453
ODHA01000001
[ODHA] human metagenome; G_DNA_Posterior fornix
70329
70256
-
Glu
CTC
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
BACK