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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
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BLAST
|
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HOW TO USE
tRNA gene List
[ODIX] human metagenome; G_DNA_Anterior nares
HIT:
30 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV180793946
ODIX01002309
[ODIX] human metagenome; G_DNA_Anterior nares
79
3
-
Met
CAT
[ENA]
¢þ
>WENV180793949
ODIX01003566
[ODIX] human metagenome; G_DNA_Anterior nares
97
173
+
Ile2
CAT
[ENA]
¢þ
>WENV180793951
ODIX01003962
[ODIX] human metagenome; G_DNA_Anterior nares
104
30
-
Asn
GTT
[ENA]
¢þ
>WENV180793947
ODIX01002312
[ODIX] human metagenome; G_DNA_Anterior nares
138
211
+
Cys
GCA
[ENA]
¢þ
>WENV180793952
ODIX01003977
[ODIX] human metagenome; G_DNA_Anterior nares
139
63
-
Arg
TCT
[ENA]
¢þ
>WENV180793939
ODIX01000733
[ODIX] human metagenome; G_DNA_Anterior nares
139
214
+
Ala
GGC
[ENA]
¢þ
>WENV180793950
ODIX01003775
[ODIX] human metagenome; G_DNA_Anterior nares
141
216
+
Trp
CCA
[ENA]
¢þ
>WENV180793944
ODIX01001723
[ODIX] human metagenome; G_DNA_Anterior nares
160
85
-
Gly
GCC
[ENA]
¢þ
>WENV180793948
ODIX01002312
[ODIX] human metagenome; G_DNA_Anterior nares
234
320
+
Leu
TAA
[ENA]
¢þ
>WENV180793943
ODIX01001331
[ODIX] human metagenome; G_DNA_Anterior nares
275
199
-
Asp
GTC
[ENA]
¢þ
>WENV180793940
ODIX01000733
[ODIX] human metagenome; G_DNA_Anterior nares
293
368
+
Glu
TTC
[ENA]
¢þ
>WENV180793936
ODIX01000475
[ODIX] human metagenome; G_DNA_Anterior nares
296
386
+
Ser
GGA
[ENA]
¢þ
>WENV180793945
ODIX01001927
[ODIX] human metagenome; G_DNA_Anterior nares
319
394
+
Lys
TTT
[ENA]
¢þ
>WENV180793942
ODIX01001331
[ODIX] human metagenome; G_DNA_Anterior nares
392
317
-
Val
TAC
[ENA]
¢þ
>WENV180793932
ODIX01000242
[ODIX] human metagenome; G_DNA_Anterior nares
506
430
-
Pro
GGG
[ENA]
¢þ
>WENV180793941
ODIX01001185
[ODIX] human metagenome; G_DNA_Anterior nares
543
467
-
Ile
GAT
[ENA]
¢þ
>WENV180793930
ODIX01000086
[ODIX] human metagenome; G_DNA_Anterior nares
584
659
+
Trp
CCA
[ENA]
¢þ
>WENV180793935
ODIX01000415
[ODIX] human metagenome; G_DNA_Anterior nares
775
699
-
Arg
CCG
[ENA]
¢þ
>WENV180793937
ODIX01000496
[ODIX] human metagenome; G_DNA_Anterior nares
995
1080
+
Leu
CAA
[ENA]
¢þ
>WENV180793934
ODIX01000395
[ODIX] human metagenome; G_DNA_Anterior nares
1035
959
-
Val
GAC
[ENA]
¢þ
>WENV180793938
ODIX01000551
[ODIX] human metagenome; G_DNA_Anterior nares
1038
963
-
Asn
GTT
[ENA]
¢þ
>WENV180793931
ODIX01000179
[ODIX] human metagenome; G_DNA_Anterior nares
1315
1231
-
Leu
TAG
[ENA]
¢þ
>WENV180793933
ODIX01000277
[ODIX] human metagenome; G_DNA_Anterior nares
1380
1456
+
fMet
CAT
[ENA]
¢þ
>WENV180793929
ODIX01000044
[ODIX] human metagenome; G_DNA_Anterior nares
1579
1654
+
Gln
TTG
[ENA]
¢þ
>WENV180793923
ODIX01000004
[ODIX] human metagenome; G_DNA_Anterior nares
2614
2690
+
Ile
GAT
[ENA]
¢þ
>WENV180793928
ODIX01000027
[ODIX] human metagenome; G_DNA_Anterior nares
2663
2579
-
Leu
GAG
[ENA]
¢þ
>WENV180793924
ODIX01000004
[ODIX] human metagenome; G_DNA_Anterior nares
2695
2770
+
Ala
TGC
[ENA]
¢þ
>WENV180793927
ODIX01000016
[ODIX] human metagenome; G_DNA_Anterior nares
3864
3790
-
Thr
GGT
[ENA]
¢þ
>WENV180793926
ODIX01000016
[ODIX] human metagenome; G_DNA_Anterior nares
3956
3883
-
Gly
TCC
[ENA]
¢þ
>WENV180793925
ODIX01000016
[ODIX] human metagenome; G_DNA_Anterior nares
4062
3979
-
Tyr
GTA
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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