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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA gene List
[ODJJ] human metagenome; G_DNA_Buccal mucosa
HIT:
101 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV180808302
ODJJ01029865
[ODJJ] human metagenome; G_DNA_Buccal mucosa
14
87
+
Phe
GAA
[ENA]
¢þ
>WENV180808252
ODJJ01007084
[ODJJ] human metagenome; G_DNA_Buccal mucosa
16
90
+
Glu
TTC
[ENA]
¢þ
>WENV180808255
ODJJ01007697
[ODJJ] human metagenome; G_DNA_Buccal mucosa
36
111
+
Phe
GAA
[ENA]
¢þ
>WENV180808278
ODJJ01014873
[ODJJ] human metagenome; G_DNA_Buccal mucosa
41
112
+
Gln
TTG
[ENA]
¢þ
>WENV180808290
ODJJ01022455
[ODJJ] human metagenome; G_DNA_Buccal mucosa
44
119
+
Trp
CCA
[ENA]
¢þ
>WENV180808293
ODJJ01022618
[ODJJ] human metagenome; G_DNA_Buccal mucosa
53
127
+
Thr
GGT
[ENA]
¢þ
>WENV180808284
ODJJ01017368
[ODJJ] human metagenome; G_DNA_Buccal mucosa
54
129
+
Thr
TGT
[ENA]
¢þ
>WENV180808259
ODJJ01008485
[ODJJ] human metagenome; G_DNA_Buccal mucosa
55
128
+
Gly
GCC
[ENA]
¢þ
>WENV180808298
ODJJ01027514
[ODJJ] human metagenome; G_DNA_Buccal mucosa
57
132
+
Lys
CTT
[ENA]
¢þ
>WENV180808229
ODJJ01002232
[ODJJ] human metagenome; G_DNA_Buccal mucosa
66
148
+
Tyr
GTA
[ENA]
¢þ
>WENV180808281
ODJJ01015308
[ODJJ] human metagenome; G_DNA_Buccal mucosa
71
147
+
Pro
TGG
[ENA]
¢þ
>WENV180808276
ODJJ01014437
[ODJJ] human metagenome; G_DNA_Buccal mucosa
73
148
+
Gly
GCC
[ENA]
¢þ
>WENV180808233
ODJJ01002373
[ODJJ] human metagenome; G_DNA_Buccal mucosa
76
152
+
Pro
TGG
[ENA]
¢þ
>WENV180808283
ODJJ01016339
[ODJJ] human metagenome; G_DNA_Buccal mucosa
78
3
-
Arg
TCT
[ENA]
¢þ
>WENV180808249
ODJJ01006723
[ODJJ] human metagenome; G_DNA_Buccal mucosa
78
172
+
SeC
TCA
[ENA]
¢þ
>WENV180808245
ODJJ01004503
[ODJJ] human metagenome; G_DNA_Buccal mucosa
80
6
-
Phe
GAA
[ENA]
¢þ
>WENV180808222
ODJJ01001702
[ODJJ] human metagenome; G_DNA_Buccal mucosa
93
19
-
Ala
TGC
[ENA]
¢þ
>WENV180808224
ODJJ01001757
[ODJJ] human metagenome; G_DNA_Buccal mucosa
93
165
+
Thr
GGT
[ENA]
¢þ
>WENV180808241
ODJJ01003970
[ODJJ] human metagenome; G_DNA_Buccal mucosa
97
22
-
Met
CAT
[ENA]
¢þ
>WENV180808304
ODJJ01031166
[ODJJ] human metagenome; G_DNA_Buccal mucosa
97
23
-
Glu
CTC
[ENA]
¢þ
>WENV180808253
ODJJ01007084
[ODJJ] human metagenome; G_DNA_Buccal mucosa
106
181
+
Val
TAC
[ENA]
¢þ
>WENV180808294
ODJJ01024305
[ODJJ] human metagenome; G_DNA_Buccal mucosa
108
184
+
Arg
ACG
[ENA]
¢þ
>WENV180808270
ODJJ01011172
[ODJJ] human metagenome; G_DNA_Buccal mucosa
111
36
-
Ile
GAT
[ENA]
¢þ
>WENV180808291
ODJJ01022481
[ODJJ] human metagenome; G_DNA_Buccal mucosa
113
203
+
Ser
TGA
[ENA]
¢þ
>WENV180808256
ODJJ01007697
[ODJJ] human metagenome; G_DNA_Buccal mucosa
114
189
+
Asn
GTT
[ENA]
¢þ
>WENV180808248
ODJJ01006646
[ODJJ] human metagenome; G_DNA_Buccal mucosa
117
33
-
Leu
CAG
[ENA]
¢þ
>WENV180808297
ODJJ01027324
[ODJJ] human metagenome; G_DNA_Buccal mucosa
120
194
+
Thr
CGT
[ENA]
¢þ
>WENV180808303
ODJJ01030109
[ODJJ] human metagenome; G_DNA_Buccal mucosa
124
48
-
Arg
CCT
[ENA]
¢þ
>WENV180808275
ODJJ01014241
[ODJJ] human metagenome; G_DNA_Buccal mucosa
124
49
-
Trp
CCA
[ENA]
¢þ
>WENV180808295
ODJJ01024533
[ODJJ] human metagenome; G_DNA_Buccal mucosa
126
53
-
Gly
GCC
[ENA]
¢þ
>WENV180808227
ODJJ01001858
[ODJJ] human metagenome; G_DNA_Buccal mucosa
128
53
-
Lys
CTT
[ENA]
¢þ
>WENV180808260
ODJJ01008485
[ODJJ] human metagenome; G_DNA_Buccal mucosa
129
201
+
Val
GAC
[ENA]
¢þ
>WENV180808301
ODJJ01028855
[ODJJ] human metagenome; G_DNA_Buccal mucosa
130
56
-
Ile2
CAT
[ENA]
¢þ
>WENV180808257
ODJJ01007919
[ODJJ] human metagenome; G_DNA_Buccal mucosa
132
207
+
Ala
TGC
[ENA]
¢þ
>WENV180808288
ODJJ01018933
[ODJJ] human metagenome; G_DNA_Buccal mucosa
135
61
-
Asp
GTC
[ENA]
¢þ
>WENV180808287
ODJJ01018930
[ODJJ] human metagenome; G_DNA_Buccal mucosa
139
66
-
Ile2
CAT
[ENA]
¢þ
>WENV180808286
ODJJ01018199
[ODJJ] human metagenome; G_DNA_Buccal mucosa
139
213
+
Pro
CGG
[ENA]
¢þ
>WENV180808289
ODJJ01020308
[ODJJ] human metagenome; G_DNA_Buccal mucosa
139
214
+
Thr
TGT
[ENA]
¢þ
>WENV180808279
ODJJ01014941
[ODJJ] human metagenome; G_DNA_Buccal mucosa
140
65
-
Ile2
CAT
[ENA]
¢þ
>WENV180808292
ODJJ01022495
[ODJJ] human metagenome; G_DNA_Buccal mucosa
140
216
+
Arg
ACG
[ENA]
¢þ
>WENV180808285
ODJJ01017368
[ODJJ] human metagenome; G_DNA_Buccal mucosa
140
224
+
Tyr
GTA
[ENA]
¢þ
>WENV180808280
ODJJ01015194
[ODJJ] human metagenome; G_DNA_Buccal mucosa
143
215
+
Gln
TTG
[ENA]
¢þ
>WENV180808215
ODJJ01000638
[ODJJ] human metagenome; G_DNA_Buccal mucosa
146
61
-
Leu
TAA
[ENA]
¢þ
>WENV180808223
ODJJ01001722
[ODJJ] human metagenome; G_DNA_Buccal mucosa
148
221
+
Arg
TCT
[ENA]
¢þ
>WENV180808220
ODJJ01000964
[ODJJ] human metagenome; G_DNA_Buccal mucosa
149
76
-
Arg
CCG
[ENA]
¢þ
>WENV180808266
ODJJ01010030
[ODJJ] human metagenome; G_DNA_Buccal mucosa
149
225
+
Ile
GAT
[ENA]
¢þ
>WENV180808230
ODJJ01002232
[ODJJ] human metagenome; G_DNA_Buccal mucosa
151
223
+
Trp
CCA
[ENA]
¢þ
>WENV180808300
ODJJ01028538
[ODJJ] human metagenome; G_DNA_Buccal mucosa
152
70
-
Tyr
GTA
[ENA]
¢þ
>WENV180808258
ODJJ01008427
[ODJJ] human metagenome; G_DNA_Buccal mucosa
154
239
+
Leu
GAG
[ENA]
¢þ
>WENV180808272
ODJJ01011218
[ODJJ] human metagenome; G_DNA_Buccal mucosa
156
81
-
Trp
CCA
[ENA]
¢þ
>WENV180808244
ODJJ01004503
[ODJJ] human metagenome; G_DNA_Buccal mucosa
156
83
-
fMet
CAT
[ENA]
¢þ
>WENV180808282
ODJJ01015965
[ODJJ] human metagenome; G_DNA_Buccal mucosa
156
83
-
Gly
CCC
[ENA]
¢þ
>WENV180808261
ODJJ01008495
[ODJJ] human metagenome; G_DNA_Buccal mucosa
158
231
+
Arg
TCT
[ENA]
¢þ
>WENV180808234
ODJJ01002373
[ODJJ] human metagenome; G_DNA_Buccal mucosa
163
236
+
Gly
TCC
[ENA]
¢þ
>WENV180808273
ODJJ01012099
[ODJJ] human metagenome; G_DNA_Buccal mucosa
165
247
+
Tyr
GTA
[ENA]
¢þ
>WENV180808277
ODJJ01014437
[ODJJ] human metagenome; G_DNA_Buccal mucosa
167
243
+
Ala
TGC
[ENA]
¢þ
>WENV180808274
ODJJ01012684
[ODJJ] human metagenome; G_DNA_Buccal mucosa
171
96
-
Lys
CTT
[ENA]
¢þ
>WENV180808265
ODJJ01009479
[ODJJ] human metagenome; G_DNA_Buccal mucosa
172
97
-
Ile
GAT
[ENA]
¢þ
>WENV180808267
ODJJ01010033
[ODJJ] human metagenome; G_DNA_Buccal mucosa
174
85
-
Ser
GGA
[ENA]
¢þ
>WENV180808264
ODJJ01009236
[ODJJ] human metagenome; G_DNA_Buccal mucosa
174
98
-
Glu
CTC
[ENA]
¢þ
>WENV180808240
ODJJ01003970
[ODJJ] human metagenome; G_DNA_Buccal mucosa
176
101
-
Pro
TGG
[ENA]
¢þ
>WENV180808299
ODJJ01028519
[ODJJ] human metagenome; G_DNA_Buccal mucosa
180
104
-
Arg
ACG
[ENA]
¢þ
>WENV180808250
ODJJ01006803
[ODJJ] human metagenome; G_DNA_Buccal mucosa
180
106
-
Gln
CTG
[ENA]
¢þ
>WENV180808228
ODJJ01002066
[ODJJ] human metagenome; G_DNA_Buccal mucosa
180
109
-
Arg
CCT
[ENA]
¢þ
>WENV180808251
ODJJ01006910
[ODJJ] human metagenome; G_DNA_Buccal mucosa
184
109
-
His
GTG
[ENA]
¢þ
>WENV180808262
ODJJ01008606
[ODJJ] human metagenome; G_DNA_Buccal mucosa
184
259
+
Asp
GTC
[ENA]
¢þ
>WENV180808221
ODJJ01001702
[ODJJ] human metagenome; G_DNA_Buccal mucosa
187
112
-
Ile
GAT
[ENA]
¢þ
>WENV180808254
ODJJ01007084
[ODJJ] human metagenome; G_DNA_Buccal mucosa
187
263
+
Asp
GTC
[ENA]
¢þ
>WENV180808207
ODJJ01000048
[ODJJ] human metagenome; G_DNA_Buccal mucosa
194
267
+
Glu
TTC
[ENA]
¢þ
>WENV180808246
ODJJ01006040
[ODJJ] human metagenome; G_DNA_Buccal mucosa
209
137
-
Thr
CGT
[ENA]
¢þ
>WENV180808296
ODJJ01026609
[ODJJ] human metagenome; G_DNA_Buccal mucosa
212
137
-
Arg
CCG
[ENA]
¢þ
>WENV180808269
ODJJ01011172
[ODJJ] human metagenome; G_DNA_Buccal mucosa
216
144
-
Gly
TCC
[ENA]
¢þ
>WENV180808268
ODJJ01011077
[ODJJ] human metagenome; G_DNA_Buccal mucosa
216
145
-
Gln
TTG
[ENA]
¢þ
>WENV180808236
ODJJ01002586
[ODJJ] human metagenome; G_DNA_Buccal mucosa
223
298
+
Lys
CTT
[ENA]
¢þ
>WENV180808214
ODJJ01000638
[ODJJ] human metagenome; G_DNA_Buccal mucosa
225
154
-
Gly
GCC
[ENA]
¢þ
>WENV180808231
ODJJ01002232
[ODJJ] human metagenome; G_DNA_Buccal mucosa
236
310
+
His
GTG
[ENA]
¢þ
>WENV180808263
ODJJ01008683
[ODJJ] human metagenome; G_DNA_Buccal mucosa
241
168
-
Ala
TGC
[ENA]
¢þ
>WENV180808271
ODJJ01011218
[ODJJ] human metagenome; G_DNA_Buccal mucosa
249
173
-
Asp
GTC
[ENA]
¢þ
>WENV180808243
ODJJ01004503
[ODJJ] human metagenome; G_DNA_Buccal mucosa
257
168
-
Ser
TGA
[ENA]
¢þ
>WENV180808239
ODJJ01003970
[ODJJ] human metagenome; G_DNA_Buccal mucosa
264
191
-
Arg
ACG
[ENA]
¢þ
>WENV180808208
ODJJ01000064
[ODJJ] human metagenome; G_DNA_Buccal mucosa
265
192
-
Cys
GCA
[ENA]
¢þ
>WENV180808247
ODJJ01006517
[ODJJ] human metagenome; G_DNA_Buccal mucosa
289
200
-
Ser
GCT
[ENA]
¢þ
>WENV180808237
ODJJ01002698
[ODJJ] human metagenome; G_DNA_Buccal mucosa
295
371
+
Asn
GTT
[ENA]
¢þ
>WENV180808219
ODJJ01000926
[ODJJ] human metagenome; G_DNA_Buccal mucosa
313
240
-
Asn
GTT
[ENA]
¢þ
>WENV180808213
ODJJ01000638
[ODJJ] human metagenome; G_DNA_Buccal mucosa
320
248
-
Thr
TGT
[ENA]
¢þ
>WENV180808232
ODJJ01002232
[ODJJ] human metagenome; G_DNA_Buccal mucosa
322
395
+
Gln
TTG
[ENA]
¢þ
>WENV180808242
ODJJ01004463
[ODJJ] human metagenome; G_DNA_Buccal mucosa
327
252
-
Ala
TGC
[ENA]
¢þ
>WENV180808235
ODJJ01002373
[ODJJ] human metagenome; G_DNA_Buccal mucosa
334
410
+
Arg
TCT
[ENA]
¢þ
>WENV180808225
ODJJ01001766
[ODJJ] human metagenome; G_DNA_Buccal mucosa
352
436
+
Leu
TAG
[ENA]
¢þ
>WENV180808218
ODJJ01000917
[ODJJ] human metagenome; G_DNA_Buccal mucosa
362
277
-
Leu
AAG
[ENA]
¢þ
>WENV180808238
ODJJ01003970
[ODJJ] human metagenome; G_DNA_Buccal mucosa
364
279
-
Leu
TAA
[ENA]
¢þ
>WENV180808226
ODJJ01001779
[ODJJ] human metagenome; G_DNA_Buccal mucosa
411
338
-
Phe
GAA
[ENA]
¢þ
>WENV180808212
ODJJ01000638
[ODJJ] human metagenome; G_DNA_Buccal mucosa
421
338
-
Leu
TAG
[ENA]
¢þ
>WENV180808216
ODJJ01000776
[ODJJ] human metagenome; G_DNA_Buccal mucosa
470
545
+
His
GTG
[ENA]
¢þ
>WENV180808211
ODJJ01000638
[ODJJ] human metagenome; G_DNA_Buccal mucosa
498
426
-
Lys
TTT
[ENA]
¢þ
>WENV180808217
ODJJ01000776
[ODJJ] human metagenome; G_DNA_Buccal mucosa
570
644
+
Gln
TTG
[ENA]
¢þ
>WENV180808210
ODJJ01000638
[ODJJ] human metagenome; G_DNA_Buccal mucosa
595
523
-
Asp
GTC
[ENA]
¢þ
>WENV180808206
ODJJ01000031
[ODJJ] human metagenome; G_DNA_Buccal mucosa
606
679
+
Lys
CTT
[ENA]
¢þ
>WENV180808209
ODJJ01000638
[ODJJ] human metagenome; G_DNA_Buccal mucosa
670
598
-
Val
TAC
[ENA]
¢þ
>WENV180808204
ODJJ01000013
[ODJJ] human metagenome; G_DNA_Buccal mucosa
1076
1150
+
Ala
TGC
[ENA]
¢þ
>WENV180808205
ODJJ01000018
[ODJJ] human metagenome; G_DNA_Buccal mucosa
2266
2191
-
Ala
TGC
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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