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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
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BLAST
|
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HOW TO USE
tRNA gene List
[ODLR] human metagenome; G_DNA_Posterior fornix
HIT:
64 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV180875513
ODLR01001222
[ODLR] human metagenome; G_DNA_Posterior fornix
1
73
+
Gln
CTG
[ENA]
¢þ
>WENV180875520
ODLR01002463
[ODLR] human metagenome; G_DNA_Posterior fornix
10
83
+
Ala
TGC
[ENA]
¢þ
>WENV180875525
ODLR01003099
[ODLR] human metagenome; G_DNA_Posterior fornix
18
91
+
Val
CAC
[ENA]
¢þ
>WENV180875521
ODLR01002509
[ODLR] human metagenome; G_DNA_Posterior fornix
37
109
+
Thr
GGT
[ENA]
¢þ
>WENV180875495
ODLR01000527
[ODLR] human metagenome; G_DNA_Posterior fornix
55
145
+
Ser
GCT
[ENA]
¢þ
>WENV180875472
ODLR01000068
[ODLR] human metagenome; G_DNA_Posterior fornix
56
131
+
Val
TAC
[ENA]
¢þ
>WENV180875523
ODLR01003059
[ODLR] human metagenome; G_DNA_Posterior fornix
62
137
+
Met
CAT
[ENA]
¢þ
>WENV180875464
ODLR01000039
[ODLR] human metagenome; G_DNA_Posterior fornix
66
140
+
Asn
GTT
[ENA]
¢þ
>WENV180875510
ODLR01000999
[ODLR] human metagenome; G_DNA_Posterior fornix
66
140
+
Asn
GTT
[ENA]
¢þ
>WENV180875516
ODLR01001745
[ODLR] human metagenome; G_DNA_Posterior fornix
76
151
+
Arg
TCT
[ENA]
¢þ
>WENV180875508
ODLR01000706
[ODLR] human metagenome; G_DNA_Posterior fornix
84
1
-
Tyr
GTA
[ENA]
¢þ
>WENV180875494
ODLR01000423
[ODLR] human metagenome; G_DNA_Posterior fornix
105
179
+
Asn
GTT
[ENA]
¢þ
>WENV180875473
ODLR01000068
[ODLR] human metagenome; G_DNA_Posterior fornix
132
204
+
Lys
TTT
[ENA]
¢þ
>WENV180875484
ODLR01000198
[ODLR] human metagenome; G_DNA_Posterior fornix
144
219
+
Thr
CGT
[ENA]
¢þ
>WENV180875524
ODLR01003059
[ODLR] human metagenome; G_DNA_Posterior fornix
149
224
+
Ile2
CAT
[ENA]
¢þ
>WENV180875511
ODLR01000999
[ODLR] human metagenome; G_DNA_Posterior fornix
149
241
+
Ser
GGA
[ENA]
¢þ
>WENV180875519
ODLR01002123
[ODLR] human metagenome; G_DNA_Posterior fornix
158
85
-
Gln
TTG
[ENA]
¢þ
>WENV180875489
ODLR01000284
[ODLR] human metagenome; G_DNA_Posterior fornix
185
111
-
Gly
GCC
[ENA]
¢þ
>WENV180875522
ODLR01002817
[ODLR] human metagenome; G_DNA_Posterior fornix
195
107
-
Ser
CGA
[ENA]
¢þ
>WENV180875474
ODLR01000068
[ODLR] human metagenome; G_DNA_Posterior fornix
219
302
+
Leu
TAG
[ENA]
¢þ
>WENV180875514
ODLR01001494
[ODLR] human metagenome; G_DNA_Posterior fornix
220
147
-
Arg
TCT
[ENA]
¢þ
>WENV180875518
ODLR01002123
[ODLR] human metagenome; G_DNA_Posterior fornix
237
164
-
His
GTG
[ENA]
¢þ
>WENV180875490
ODLR01000303
[ODLR] human metagenome; G_DNA_Posterior fornix
239
153
-
Leu
CAG
[ENA]
¢þ
>WENV180875506
ODLR01000698
[ODLR] human metagenome; G_DNA_Posterior fornix
283
209
-
Thr
CGT
[ENA]
¢þ
>WENV180875517
ODLR01002123
[ODLR] human metagenome; G_DNA_Posterior fornix
323
251
-
Trp
CCA
[ENA]
¢þ
>WENV180875504
ODLR01000559
[ODLR] human metagenome; G_DNA_Posterior fornix
328
400
+
Thr
AGT
[ENA]
¢þ
>WENV180875475
ODLR01000068
[ODLR] human metagenome; G_DNA_Posterior fornix
334
407
+
Thr
TGT
[ENA]
¢þ
>WENV180875476
ODLR01000068
[ODLR] human metagenome; G_DNA_Posterior fornix
412
483
+
Gly
GCC
[ENA]
¢þ
>WENV180875512
ODLR01001166
[ODLR] human metagenome; G_DNA_Posterior fornix
424
352
-
Trp
CCA
[ENA]
¢þ
>WENV180875477
ODLR01000068
[ODLR] human metagenome; G_DNA_Posterior fornix
495
582
+
Leu
TAA
[ENA]
¢þ
>WENV180875481
ODLR01000114
[ODLR] human metagenome; G_DNA_Posterior fornix
518
603
+
Leu
AAG
[ENA]
¢þ
>WENV180875515
ODLR01001649
[ODLR] human metagenome; G_DNA_Posterior fornix
532
460
-
Gly
CCC
[ENA]
¢þ
>WENV180875482
ODLR01000121
[ODLR] human metagenome; G_DNA_Posterior fornix
571
498
-
Arg
CCG
[ENA]
¢þ
>WENV180875478
ODLR01000068
[ODLR] human metagenome; G_DNA_Posterior fornix
590
665
+
Arg
ACG
[ENA]
¢þ
>WENV180875463
ODLR01000036
[ODLR] human metagenome; G_DNA_Posterior fornix
598
524
-
Lys
CTT
[ENA]
¢þ
>WENV180875479
ODLR01000068
[ODLR] human metagenome; G_DNA_Posterior fornix
670
743
+
Pro
TGG
[ENA]
¢þ
>WENV180875496
ODLR01000527
[ODLR] human metagenome; G_DNA_Posterior fornix
900
973
+
Glu
TTC
[ENA]
¢þ
>WENV180875497
ODLR01000527
[ODLR] human metagenome; G_DNA_Posterior fornix
1006
1092
+
Ser
TGA
[ENA]
¢þ
>WENV180875509
ODLR01000896
[ODLR] human metagenome; G_DNA_Posterior fornix
1062
971
-
Ser
GCT
[ENA]
¢þ
>WENV180875503
ODLR01000535
[ODLR] human metagenome; G_DNA_Posterior fornix
1071
999
-
Thr
GGT
[ENA]
¢þ
>WENV180875498
ODLR01000527
[ODLR] human metagenome; G_DNA_Posterior fornix
1103
1178
+
fMet
CAT
[ENA]
¢þ
>WENV180875480
ODLR01000106
[ODLR] human metagenome; G_DNA_Posterior fornix
1163
1091
-
Thr
GGT
[ENA]
¢þ
>WENV180875499
ODLR01000527
[ODLR] human metagenome; G_DNA_Posterior fornix
1180
1255
+
Asp
GTC
[ENA]
¢þ
>WENV180875500
ODLR01000527
[ODLR] human metagenome; G_DNA_Posterior fornix
1260
1334
+
Phe
GAA
[ENA]
¢þ
>WENV180875505
ODLR01000628
[ODLR] human metagenome; G_DNA_Posterior fornix
1276
1188
-
Ser
CGA
[ENA]
¢þ
>WENV180875507
ODLR01000706
[ODLR] human metagenome; G_DNA_Posterior fornix
1288
1215
-
Gln
TTG
[ENA]
¢þ
>WENV180875501
ODLR01000527
[ODLR] human metagenome; G_DNA_Posterior fornix
1428
1504
+
Ile
GAT
[ENA]
¢þ
>WENV180875486
ODLR01000239
[ODLR] human metagenome; G_DNA_Posterior fornix
1466
1394
-
Gln
CTG
[ENA]
¢þ
>WENV180875502
ODLR01000527
[ODLR] human metagenome; G_DNA_Posterior fornix
1530
1604
+
Ala
TGC
[ENA]
¢þ
>WENV180875485
ODLR01000239
[ODLR] human metagenome; G_DNA_Posterior fornix
1544
1471
-
Glu
CTC
[ENA]
¢þ
>WENV180875493
ODLR01000395
[ODLR] human metagenome; G_DNA_Posterior fornix
1663
1589
-
Arg
CCT
[ENA]
¢þ
>WENV180875492
ODLR01000375
[ODLR] human metagenome; G_DNA_Posterior fornix
1960
2031
+
Arg
CCG
[ENA]
¢þ
>WENV180875470
ODLR01000063
[ODLR] human metagenome; G_DNA_Posterior fornix
2138
2210
+
Glu
TTC
[ENA]
¢þ
>WENV180875488
ODLR01000274
[ODLR] human metagenome; G_DNA_Posterior fornix
2142
2068
-
Ala
TGC
[ENA]
¢þ
>WENV180875491
ODLR01000355
[ODLR] human metagenome; G_DNA_Posterior fornix
2189
2277
+
Ser
CGA
[ENA]
¢þ
>WENV180875471
ODLR01000063
[ODLR] human metagenome; G_DNA_Posterior fornix
2214
2288
+
Val
TAC
[ENA]
¢þ
>WENV180875487
ODLR01000274
[ODLR] human metagenome; G_DNA_Posterior fornix
2272
2198
-
Ile
GAT
[ENA]
¢þ
>WENV180875466
ODLR01000040
[ODLR] human metagenome; G_DNA_Posterior fornix
3105
3032
-
Gln
TTG
[ENA]
¢þ
>WENV180875465
ODLR01000040
[ODLR] human metagenome; G_DNA_Posterior fornix
3220
3139
-
Tyr
GTA
[ENA]
¢þ
>WENV180875483
ODLR01000165
[ODLR] human metagenome; G_DNA_Posterior fornix
3553
3626
+
Gln
TTG
[ENA]
¢þ
>WENV180875469
ODLR01000051
[ODLR] human metagenome; G_DNA_Posterior fornix
3637
3565
-
Trp
CCA
[ENA]
¢þ
>WENV180875468
ODLR01000051
[ODLR] human metagenome; G_DNA_Posterior fornix
4191
4116
-
Gln
TTG
[ENA]
¢þ
>WENV180875467
ODLR01000042
[ODLR] human metagenome; G_DNA_Posterior fornix
5212
5286
+
Thr
AGT
[ENA]
¢þ
>WENV180875462
ODLR01000016
[ODLR] human metagenome; G_DNA_Posterior fornix
5857
5927
+
Gly
CCC
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
BACK