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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA gene List
[ODMV] human metagenome; G_DNA_Anterior nares
HIT:
62 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV180895169
ODMV01006125
[ODMV] human metagenome; G_DNA_Anterior nares
31
104
+
Val
CAC
[ENA]
¢þ
>WENV180895179
ODMV01009834
[ODMV] human metagenome; G_DNA_Anterior nares
33
106
+
Gln
TTG
[ENA]
¢þ
>WENV180895161
ODMV01002415
[ODMV] human metagenome; G_DNA_Anterior nares
36
108
+
Val
GAC
[ENA]
¢þ
>WENV180895171
ODMV01006723
[ODMV] human metagenome; G_DNA_Anterior nares
43
117
+
Glu
TTC
[ENA]
¢þ
>WENV180895146
ODMV01001199
[ODMV] human metagenome; G_DNA_Anterior nares
75
157
+
Tyr
GTA
[ENA]
¢þ
>WENV180895156
ODMV01001582
[ODMV] human metagenome; G_DNA_Anterior nares
81
7
-
Val
TAC
[ENA]
¢þ
>WENV180895176
ODMV01008646
[ODMV] human metagenome; G_DNA_Anterior nares
92
167
+
Thr
CGT
[ENA]
¢þ
>WENV180895178
ODMV01009597
[ODMV] human metagenome; G_DNA_Anterior nares
101
25
-
fMet
CAT
[ENA]
¢þ
>WENV180895164
ODMV01002634
[ODMV] human metagenome; G_DNA_Anterior nares
101
28
-
Arg
ACG
[ENA]
¢þ
>WENV180895175
ODMV01008183
[ODMV] human metagenome; G_DNA_Anterior nares
110
34
-
Arg
ACG
[ENA]
¢þ
>WENV180895180
ODMV01009834
[ODMV] human metagenome; G_DNA_Anterior nares
118
190
+
Cys
GCA
[ENA]
¢þ
>WENV180895142
ODMV01000726
[ODMV] human metagenome; G_DNA_Anterior nares
120
45
-
Glu
TTC
[ENA]
¢þ
>WENV180895172
ODMV01006723
[ODMV] human metagenome; G_DNA_Anterior nares
122
197
+
Val
TAC
[ENA]
¢þ
>WENV180895151
ODMV01001346
[ODMV] human metagenome; G_DNA_Anterior nares
129
58
-
Cys
GCA
[ENA]
¢þ
>WENV180895119
ODMV01000023
[ODMV] human metagenome; G_DNA_Anterior nares
135
207
+
Asn
GTT
[ENA]
¢þ
>WENV180895173
ODMV01007775
[ODMV] human metagenome; G_DNA_Anterior nares
138
64
-
Pro
GGG
[ENA]
¢þ
>WENV180895177
ODMV01008728
[ODMV] human metagenome; G_DNA_Anterior nares
146
73
-
Gly
TCC
[ENA]
¢þ
>WENV180895158
ODMV01001721
[ODMV] human metagenome; G_DNA_Anterior nares
173
247
+
Ala
TGC
[ENA]
¢þ
>WENV180895163
ODMV01002602
[ODMV] human metagenome; G_DNA_Anterior nares
178
253
+
Thr
TGT
[ENA]
¢þ
>WENV180895170
ODMV01006503
[ODMV] human metagenome; G_DNA_Anterior nares
180
88
-
Ser
TGA
[ENA]
¢þ
>WENV180895134
ODMV01000429
[ODMV] human metagenome; G_DNA_Anterior nares
196
122
-
Ala
TGC
[ENA]
¢þ
>WENV180895174
ODMV01008183
[ODMV] human metagenome; G_DNA_Anterior nares
211
123
-
Leu
TAA
[ENA]
¢þ
>WENV180895144
ODMV01001032
[ODMV] human metagenome; G_DNA_Anterior nares
217
290
+
Trp
CCA
[ENA]
¢þ
>WENV180895168
ODMV01003947
[ODMV] human metagenome; G_DNA_Anterior nares
226
142
-
Leu
TAG
[ENA]
¢þ
>WENV180895150
ODMV01001346
[ODMV] human metagenome; G_DNA_Anterior nares
230
157
-
Gly
GCC
[ENA]
¢þ
>WENV180895166
ODMV01003389
[ODMV] human metagenome; G_DNA_Anterior nares
231
303
+
Thr
GGT
[ENA]
¢þ
>WENV180895167
ODMV01003907
[ODMV] human metagenome; G_DNA_Anterior nares
234
310
+
Ile2
CAT
[ENA]
¢þ
>WENV180895153
ODMV01001403
[ODMV] human metagenome; G_DNA_Anterior nares
244
169
-
Glu
CTC
[ENA]
¢þ
>WENV180895154
ODMV01001408
[ODMV] human metagenome; G_DNA_Anterior nares
263
346
+
Leu
CAG
[ENA]
¢þ
>WENV180895141
ODMV01000726
[ODMV] human metagenome; G_DNA_Anterior nares
274
199
-
Ala
GGC
[ENA]
¢þ
>WENV180895162
ODMV01002487
[ODMV] human metagenome; G_DNA_Anterior nares
279
364
+
Ser
TGA
[ENA]
¢þ
>WENV180895165
ODMV01002917
[ODMV] human metagenome; G_DNA_Anterior nares
296
370
+
Lys
CTT
[ENA]
¢þ
>WENV180895140
ODMV01000693
[ODMV] human metagenome; G_DNA_Anterior nares
315
239
-
Pro
CGG
[ENA]
¢þ
>WENV180895160
ODMV01001853
[ODMV] human metagenome; G_DNA_Anterior nares
334
249
-
Ser
TGA
[ENA]
¢þ
>WENV180895147
ODMV01001199
[ODMV] human metagenome; G_DNA_Anterior nares
358
431
+
Thr
GGT
[ENA]
¢þ
>WENV180895149
ODMV01001268
[ODMV] human metagenome; G_DNA_Anterior nares
366
441
+
Trp
CCA
[ENA]
¢þ
>WENV180895124
ODMV01000061
[ODMV] human metagenome; G_DNA_Anterior nares
381
311
-
Met
CAT
[ENA]
¢þ
>WENV180895129
ODMV01000316
[ODMV] human metagenome; G_DNA_Anterior nares
384
458
+
Asp
GTC
[ENA]
¢þ
>WENV180895159
ODMV01001853
[ODMV] human metagenome; G_DNA_Anterior nares
440
358
-
Tyr
GTA
[ENA]
¢þ
>WENV180895152
ODMV01001403
[ODMV] human metagenome; G_DNA_Anterior nares
452
380
-
Gln
CTG
[ENA]
¢þ
>WENV180895143
ODMV01001011
[ODMV] human metagenome; G_DNA_Anterior nares
469
393
-
fMet
CAT
[ENA]
¢þ
>WENV180895145
ODMV01001097
[ODMV] human metagenome; G_DNA_Anterior nares
484
557
+
Asn
GTT
[ENA]
¢þ
>WENV180895157
ODMV01001663
[ODMV] human metagenome; G_DNA_Anterior nares
492
407
-
Ser
GGA
[ENA]
¢þ
>WENV180895148
ODMV01001199
[ODMV] human metagenome; G_DNA_Anterior nares
496
570
+
Met
CAT
[ENA]
¢þ
>WENV180895130
ODMV01000316
[ODMV] human metagenome; G_DNA_Anterior nares
519
594
+
Phe
GAA
[ENA]
¢þ
>WENV180895132
ODMV01000353
[ODMV] human metagenome; G_DNA_Anterior nares
529
604
+
Lys
TTT
[ENA]
¢þ
>WENV180895155
ODMV01001520
[ODMV] human metagenome; G_DNA_Anterior nares
545
470
-
Asn
GTT
[ENA]
¢þ
>WENV180895122
ODMV01000059
[ODMV] human metagenome; G_DNA_Anterior nares
548
618
+
Val
TAC
[ENA]
¢þ
>WENV180895139
ODMV01000587
[ODMV] human metagenome; G_DNA_Anterior nares
555
481
-
Lys
TTT
[ENA]
¢þ
>WENV180895137
ODMV01000538
[ODMV] human metagenome; G_DNA_Anterior nares
632
715
+
Leu
TAG
[ENA]
¢þ
>WENV180895136
ODMV01000494
[ODMV] human metagenome; G_DNA_Anterior nares
709
782
+
Ala
GGC
[ENA]
¢þ
>WENV180895138
ODMV01000553
[ODMV] human metagenome; G_DNA_Anterior nares
815
890
+
His
GTG
[ENA]
¢þ
>WENV180895127
ODMV01000151
[ODMV] human metagenome; G_DNA_Anterior nares
941
1016
+
Arg
TCT
[ENA]
¢þ
>WENV180895135
ODMV01000482
[ODMV] human metagenome; G_DNA_Anterior nares
1069
996
-
Arg
CCT
[ENA]
¢þ
>WENV180895133
ODMV01000353
[ODMV] human metagenome; G_DNA_Anterior nares
1209
1136
-
Thr
TGT
[ENA]
¢þ
>WENV180895131
ODMV01000318
[ODMV] human metagenome; G_DNA_Anterior nares
1263
1188
-
Ala
TGC
[ENA]
¢þ
>WENV180895128
ODMV01000219
[ODMV] human metagenome; G_DNA_Anterior nares
1359
1284
-
Thr
CGT
[ENA]
¢þ
>WENV180895123
ODMV01000061
[ODMV] human metagenome; G_DNA_Anterior nares
1607
1680
+
His
GTG
[ENA]
¢þ
>WENV180895120
ODMV01000038
[ODMV] human metagenome; G_DNA_Anterior nares
1632
1716
+
Leu
TAG
[ENA]
¢þ
>WENV180895126
ODMV01000143
[ODMV] human metagenome; G_DNA_Anterior nares
1643
1570
-
Gly
TCC
[ENA]
¢þ
>WENV180895125
ODMV01000063
[ODMV] human metagenome; G_DNA_Anterior nares
1966
2053
+
Ser
CGA
[ENA]
¢þ
>WENV180895121
ODMV01000038
[ODMV] human metagenome; G_DNA_Anterior nares
2093
2168
+
Arg
TCG
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
BACK