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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
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HOW TO USE
tRNA gene List
[ODNT] human metagenome; G_DNA_R_Retroauricular crease
HIT:
62 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV180898673
ODNT01006125
[ODNT] human metagenome; G_DNA_R_Retroauricular crease
31
104
+
Val
CAC
[ENA]
¢þ
>WENV180898683
ODNT01009834
[ODNT] human metagenome; G_DNA_R_Retroauricular crease
33
106
+
Gln
TTG
[ENA]
¢þ
>WENV180898665
ODNT01002415
[ODNT] human metagenome; G_DNA_R_Retroauricular crease
36
108
+
Val
GAC
[ENA]
¢þ
>WENV180898675
ODNT01006723
[ODNT] human metagenome; G_DNA_R_Retroauricular crease
43
117
+
Glu
TTC
[ENA]
¢þ
>WENV180898650
ODNT01001199
[ODNT] human metagenome; G_DNA_R_Retroauricular crease
75
157
+
Tyr
GTA
[ENA]
¢þ
>WENV180898660
ODNT01001582
[ODNT] human metagenome; G_DNA_R_Retroauricular crease
81
7
-
Val
TAC
[ENA]
¢þ
>WENV180898680
ODNT01008646
[ODNT] human metagenome; G_DNA_R_Retroauricular crease
92
167
+
Thr
CGT
[ENA]
¢þ
>WENV180898682
ODNT01009597
[ODNT] human metagenome; G_DNA_R_Retroauricular crease
101
25
-
fMet
CAT
[ENA]
¢þ
>WENV180898668
ODNT01002634
[ODNT] human metagenome; G_DNA_R_Retroauricular crease
101
28
-
Arg
ACG
[ENA]
¢þ
>WENV180898679
ODNT01008183
[ODNT] human metagenome; G_DNA_R_Retroauricular crease
110
34
-
Arg
ACG
[ENA]
¢þ
>WENV180898684
ODNT01009834
[ODNT] human metagenome; G_DNA_R_Retroauricular crease
118
190
+
Cys
GCA
[ENA]
¢þ
>WENV180898646
ODNT01000726
[ODNT] human metagenome; G_DNA_R_Retroauricular crease
120
45
-
Glu
TTC
[ENA]
¢þ
>WENV180898676
ODNT01006723
[ODNT] human metagenome; G_DNA_R_Retroauricular crease
122
197
+
Val
TAC
[ENA]
¢þ
>WENV180898655
ODNT01001346
[ODNT] human metagenome; G_DNA_R_Retroauricular crease
129
58
-
Cys
GCA
[ENA]
¢þ
>WENV180898623
ODNT01000023
[ODNT] human metagenome; G_DNA_R_Retroauricular crease
135
207
+
Asn
GTT
[ENA]
¢þ
>WENV180898677
ODNT01007775
[ODNT] human metagenome; G_DNA_R_Retroauricular crease
138
64
-
Pro
GGG
[ENA]
¢þ
>WENV180898681
ODNT01008728
[ODNT] human metagenome; G_DNA_R_Retroauricular crease
146
73
-
Gly
TCC
[ENA]
¢þ
>WENV180898662
ODNT01001721
[ODNT] human metagenome; G_DNA_R_Retroauricular crease
173
247
+
Ala
TGC
[ENA]
¢þ
>WENV180898667
ODNT01002602
[ODNT] human metagenome; G_DNA_R_Retroauricular crease
178
253
+
Thr
TGT
[ENA]
¢þ
>WENV180898674
ODNT01006503
[ODNT] human metagenome; G_DNA_R_Retroauricular crease
180
88
-
Ser
TGA
[ENA]
¢þ
>WENV180898638
ODNT01000429
[ODNT] human metagenome; G_DNA_R_Retroauricular crease
196
122
-
Ala
TGC
[ENA]
¢þ
>WENV180898678
ODNT01008183
[ODNT] human metagenome; G_DNA_R_Retroauricular crease
211
123
-
Leu
TAA
[ENA]
¢þ
>WENV180898648
ODNT01001032
[ODNT] human metagenome; G_DNA_R_Retroauricular crease
217
290
+
Trp
CCA
[ENA]
¢þ
>WENV180898672
ODNT01003947
[ODNT] human metagenome; G_DNA_R_Retroauricular crease
226
142
-
Leu
TAG
[ENA]
¢þ
>WENV180898654
ODNT01001346
[ODNT] human metagenome; G_DNA_R_Retroauricular crease
230
157
-
Gly
GCC
[ENA]
¢þ
>WENV180898670
ODNT01003389
[ODNT] human metagenome; G_DNA_R_Retroauricular crease
231
303
+
Thr
GGT
[ENA]
¢þ
>WENV180898671
ODNT01003907
[ODNT] human metagenome; G_DNA_R_Retroauricular crease
234
310
+
Ile2
CAT
[ENA]
¢þ
>WENV180898657
ODNT01001403
[ODNT] human metagenome; G_DNA_R_Retroauricular crease
244
169
-
Glu
CTC
[ENA]
¢þ
>WENV180898658
ODNT01001408
[ODNT] human metagenome; G_DNA_R_Retroauricular crease
263
346
+
Leu
CAG
[ENA]
¢þ
>WENV180898645
ODNT01000726
[ODNT] human metagenome; G_DNA_R_Retroauricular crease
274
199
-
Ala
GGC
[ENA]
¢þ
>WENV180898666
ODNT01002487
[ODNT] human metagenome; G_DNA_R_Retroauricular crease
279
364
+
Ser
TGA
[ENA]
¢þ
>WENV180898669
ODNT01002917
[ODNT] human metagenome; G_DNA_R_Retroauricular crease
296
370
+
Lys
CTT
[ENA]
¢þ
>WENV180898644
ODNT01000693
[ODNT] human metagenome; G_DNA_R_Retroauricular crease
315
239
-
Pro
CGG
[ENA]
¢þ
>WENV180898664
ODNT01001853
[ODNT] human metagenome; G_DNA_R_Retroauricular crease
334
249
-
Ser
TGA
[ENA]
¢þ
>WENV180898651
ODNT01001199
[ODNT] human metagenome; G_DNA_R_Retroauricular crease
358
431
+
Thr
GGT
[ENA]
¢þ
>WENV180898653
ODNT01001268
[ODNT] human metagenome; G_DNA_R_Retroauricular crease
366
441
+
Trp
CCA
[ENA]
¢þ
>WENV180898628
ODNT01000061
[ODNT] human metagenome; G_DNA_R_Retroauricular crease
381
311
-
Met
CAT
[ENA]
¢þ
>WENV180898633
ODNT01000316
[ODNT] human metagenome; G_DNA_R_Retroauricular crease
384
458
+
Asp
GTC
[ENA]
¢þ
>WENV180898663
ODNT01001853
[ODNT] human metagenome; G_DNA_R_Retroauricular crease
440
358
-
Tyr
GTA
[ENA]
¢þ
>WENV180898656
ODNT01001403
[ODNT] human metagenome; G_DNA_R_Retroauricular crease
452
380
-
Gln
CTG
[ENA]
¢þ
>WENV180898647
ODNT01001011
[ODNT] human metagenome; G_DNA_R_Retroauricular crease
469
393
-
fMet
CAT
[ENA]
¢þ
>WENV180898649
ODNT01001097
[ODNT] human metagenome; G_DNA_R_Retroauricular crease
484
557
+
Asn
GTT
[ENA]
¢þ
>WENV180898661
ODNT01001663
[ODNT] human metagenome; G_DNA_R_Retroauricular crease
492
407
-
Ser
GGA
[ENA]
¢þ
>WENV180898652
ODNT01001199
[ODNT] human metagenome; G_DNA_R_Retroauricular crease
496
570
+
Met
CAT
[ENA]
¢þ
>WENV180898634
ODNT01000316
[ODNT] human metagenome; G_DNA_R_Retroauricular crease
519
594
+
Phe
GAA
[ENA]
¢þ
>WENV180898636
ODNT01000353
[ODNT] human metagenome; G_DNA_R_Retroauricular crease
529
604
+
Lys
TTT
[ENA]
¢þ
>WENV180898659
ODNT01001520
[ODNT] human metagenome; G_DNA_R_Retroauricular crease
545
470
-
Asn
GTT
[ENA]
¢þ
>WENV180898626
ODNT01000059
[ODNT] human metagenome; G_DNA_R_Retroauricular crease
548
618
+
Val
TAC
[ENA]
¢þ
>WENV180898643
ODNT01000587
[ODNT] human metagenome; G_DNA_R_Retroauricular crease
555
481
-
Lys
TTT
[ENA]
¢þ
>WENV180898641
ODNT01000538
[ODNT] human metagenome; G_DNA_R_Retroauricular crease
632
715
+
Leu
TAG
[ENA]
¢þ
>WENV180898640
ODNT01000494
[ODNT] human metagenome; G_DNA_R_Retroauricular crease
709
782
+
Ala
GGC
[ENA]
¢þ
>WENV180898642
ODNT01000553
[ODNT] human metagenome; G_DNA_R_Retroauricular crease
815
890
+
His
GTG
[ENA]
¢þ
>WENV180898631
ODNT01000151
[ODNT] human metagenome; G_DNA_R_Retroauricular crease
941
1016
+
Arg
TCT
[ENA]
¢þ
>WENV180898639
ODNT01000482
[ODNT] human metagenome; G_DNA_R_Retroauricular crease
1069
996
-
Arg
CCT
[ENA]
¢þ
>WENV180898637
ODNT01000353
[ODNT] human metagenome; G_DNA_R_Retroauricular crease
1209
1136
-
Thr
TGT
[ENA]
¢þ
>WENV180898635
ODNT01000318
[ODNT] human metagenome; G_DNA_R_Retroauricular crease
1263
1188
-
Ala
TGC
[ENA]
¢þ
>WENV180898632
ODNT01000219
[ODNT] human metagenome; G_DNA_R_Retroauricular crease
1359
1284
-
Thr
CGT
[ENA]
¢þ
>WENV180898627
ODNT01000061
[ODNT] human metagenome; G_DNA_R_Retroauricular crease
1607
1680
+
His
GTG
[ENA]
¢þ
>WENV180898624
ODNT01000038
[ODNT] human metagenome; G_DNA_R_Retroauricular crease
1632
1716
+
Leu
TAG
[ENA]
¢þ
>WENV180898630
ODNT01000143
[ODNT] human metagenome; G_DNA_R_Retroauricular crease
1643
1570
-
Gly
TCC
[ENA]
¢þ
>WENV180898629
ODNT01000063
[ODNT] human metagenome; G_DNA_R_Retroauricular crease
1966
2053
+
Ser
CGA
[ENA]
¢þ
>WENV180898625
ODNT01000038
[ODNT] human metagenome; G_DNA_R_Retroauricular crease
2093
2168
+
Arg
TCG
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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