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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
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BLAST
|
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HOW TO USE
tRNA gene List
[ODOA] human metagenome; G_DNA_Tongue dorsum
HIT:
62 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV180899107
ODOA01006125
[ODOA] human metagenome; G_DNA_Tongue dorsum
31
104
+
Val
CAC
[ENA]
¢þ
>WENV180899117
ODOA01009834
[ODOA] human metagenome; G_DNA_Tongue dorsum
33
106
+
Gln
TTG
[ENA]
¢þ
>WENV180899099
ODOA01002415
[ODOA] human metagenome; G_DNA_Tongue dorsum
36
108
+
Val
GAC
[ENA]
¢þ
>WENV180899109
ODOA01006723
[ODOA] human metagenome; G_DNA_Tongue dorsum
43
117
+
Glu
TTC
[ENA]
¢þ
>WENV180899084
ODOA01001199
[ODOA] human metagenome; G_DNA_Tongue dorsum
75
157
+
Tyr
GTA
[ENA]
¢þ
>WENV180899094
ODOA01001582
[ODOA] human metagenome; G_DNA_Tongue dorsum
81
7
-
Val
TAC
[ENA]
¢þ
>WENV180899114
ODOA01008646
[ODOA] human metagenome; G_DNA_Tongue dorsum
92
167
+
Thr
CGT
[ENA]
¢þ
>WENV180899116
ODOA01009597
[ODOA] human metagenome; G_DNA_Tongue dorsum
101
25
-
fMet
CAT
[ENA]
¢þ
>WENV180899102
ODOA01002634
[ODOA] human metagenome; G_DNA_Tongue dorsum
101
28
-
Arg
ACG
[ENA]
¢þ
>WENV180899113
ODOA01008183
[ODOA] human metagenome; G_DNA_Tongue dorsum
110
34
-
Arg
ACG
[ENA]
¢þ
>WENV180899118
ODOA01009834
[ODOA] human metagenome; G_DNA_Tongue dorsum
118
190
+
Cys
GCA
[ENA]
¢þ
>WENV180899080
ODOA01000726
[ODOA] human metagenome; G_DNA_Tongue dorsum
120
45
-
Glu
TTC
[ENA]
¢þ
>WENV180899110
ODOA01006723
[ODOA] human metagenome; G_DNA_Tongue dorsum
122
197
+
Val
TAC
[ENA]
¢þ
>WENV180899089
ODOA01001346
[ODOA] human metagenome; G_DNA_Tongue dorsum
129
58
-
Cys
GCA
[ENA]
¢þ
>WENV180899057
ODOA01000023
[ODOA] human metagenome; G_DNA_Tongue dorsum
135
207
+
Asn
GTT
[ENA]
¢þ
>WENV180899111
ODOA01007775
[ODOA] human metagenome; G_DNA_Tongue dorsum
138
64
-
Pro
GGG
[ENA]
¢þ
>WENV180899115
ODOA01008728
[ODOA] human metagenome; G_DNA_Tongue dorsum
146
73
-
Gly
TCC
[ENA]
¢þ
>WENV180899096
ODOA01001721
[ODOA] human metagenome; G_DNA_Tongue dorsum
173
247
+
Ala
TGC
[ENA]
¢þ
>WENV180899101
ODOA01002602
[ODOA] human metagenome; G_DNA_Tongue dorsum
178
253
+
Thr
TGT
[ENA]
¢þ
>WENV180899108
ODOA01006503
[ODOA] human metagenome; G_DNA_Tongue dorsum
180
88
-
Ser
TGA
[ENA]
¢þ
>WENV180899072
ODOA01000429
[ODOA] human metagenome; G_DNA_Tongue dorsum
196
122
-
Ala
TGC
[ENA]
¢þ
>WENV180899112
ODOA01008183
[ODOA] human metagenome; G_DNA_Tongue dorsum
211
123
-
Leu
TAA
[ENA]
¢þ
>WENV180899082
ODOA01001032
[ODOA] human metagenome; G_DNA_Tongue dorsum
217
290
+
Trp
CCA
[ENA]
¢þ
>WENV180899106
ODOA01003947
[ODOA] human metagenome; G_DNA_Tongue dorsum
226
142
-
Leu
TAG
[ENA]
¢þ
>WENV180899088
ODOA01001346
[ODOA] human metagenome; G_DNA_Tongue dorsum
230
157
-
Gly
GCC
[ENA]
¢þ
>WENV180899104
ODOA01003389
[ODOA] human metagenome; G_DNA_Tongue dorsum
231
303
+
Thr
GGT
[ENA]
¢þ
>WENV180899105
ODOA01003907
[ODOA] human metagenome; G_DNA_Tongue dorsum
234
310
+
Ile2
CAT
[ENA]
¢þ
>WENV180899091
ODOA01001403
[ODOA] human metagenome; G_DNA_Tongue dorsum
244
169
-
Glu
CTC
[ENA]
¢þ
>WENV180899092
ODOA01001408
[ODOA] human metagenome; G_DNA_Tongue dorsum
263
346
+
Leu
CAG
[ENA]
¢þ
>WENV180899079
ODOA01000726
[ODOA] human metagenome; G_DNA_Tongue dorsum
274
199
-
Ala
GGC
[ENA]
¢þ
>WENV180899100
ODOA01002487
[ODOA] human metagenome; G_DNA_Tongue dorsum
279
364
+
Ser
TGA
[ENA]
¢þ
>WENV180899103
ODOA01002917
[ODOA] human metagenome; G_DNA_Tongue dorsum
296
370
+
Lys
CTT
[ENA]
¢þ
>WENV180899078
ODOA01000693
[ODOA] human metagenome; G_DNA_Tongue dorsum
315
239
-
Pro
CGG
[ENA]
¢þ
>WENV180899098
ODOA01001853
[ODOA] human metagenome; G_DNA_Tongue dorsum
334
249
-
Ser
TGA
[ENA]
¢þ
>WENV180899085
ODOA01001199
[ODOA] human metagenome; G_DNA_Tongue dorsum
358
431
+
Thr
GGT
[ENA]
¢þ
>WENV180899087
ODOA01001268
[ODOA] human metagenome; G_DNA_Tongue dorsum
366
441
+
Trp
CCA
[ENA]
¢þ
>WENV180899062
ODOA01000061
[ODOA] human metagenome; G_DNA_Tongue dorsum
381
311
-
Met
CAT
[ENA]
¢þ
>WENV180899067
ODOA01000316
[ODOA] human metagenome; G_DNA_Tongue dorsum
384
458
+
Asp
GTC
[ENA]
¢þ
>WENV180899097
ODOA01001853
[ODOA] human metagenome; G_DNA_Tongue dorsum
440
358
-
Tyr
GTA
[ENA]
¢þ
>WENV180899090
ODOA01001403
[ODOA] human metagenome; G_DNA_Tongue dorsum
452
380
-
Gln
CTG
[ENA]
¢þ
>WENV180899081
ODOA01001011
[ODOA] human metagenome; G_DNA_Tongue dorsum
469
393
-
fMet
CAT
[ENA]
¢þ
>WENV180899083
ODOA01001097
[ODOA] human metagenome; G_DNA_Tongue dorsum
484
557
+
Asn
GTT
[ENA]
¢þ
>WENV180899095
ODOA01001663
[ODOA] human metagenome; G_DNA_Tongue dorsum
492
407
-
Ser
GGA
[ENA]
¢þ
>WENV180899086
ODOA01001199
[ODOA] human metagenome; G_DNA_Tongue dorsum
496
570
+
Met
CAT
[ENA]
¢þ
>WENV180899068
ODOA01000316
[ODOA] human metagenome; G_DNA_Tongue dorsum
519
594
+
Phe
GAA
[ENA]
¢þ
>WENV180899070
ODOA01000353
[ODOA] human metagenome; G_DNA_Tongue dorsum
529
604
+
Lys
TTT
[ENA]
¢þ
>WENV180899093
ODOA01001520
[ODOA] human metagenome; G_DNA_Tongue dorsum
545
470
-
Asn
GTT
[ENA]
¢þ
>WENV180899060
ODOA01000059
[ODOA] human metagenome; G_DNA_Tongue dorsum
548
618
+
Val
TAC
[ENA]
¢þ
>WENV180899077
ODOA01000587
[ODOA] human metagenome; G_DNA_Tongue dorsum
555
481
-
Lys
TTT
[ENA]
¢þ
>WENV180899075
ODOA01000538
[ODOA] human metagenome; G_DNA_Tongue dorsum
632
715
+
Leu
TAG
[ENA]
¢þ
>WENV180899074
ODOA01000494
[ODOA] human metagenome; G_DNA_Tongue dorsum
709
782
+
Ala
GGC
[ENA]
¢þ
>WENV180899076
ODOA01000553
[ODOA] human metagenome; G_DNA_Tongue dorsum
815
890
+
His
GTG
[ENA]
¢þ
>WENV180899065
ODOA01000151
[ODOA] human metagenome; G_DNA_Tongue dorsum
941
1016
+
Arg
TCT
[ENA]
¢þ
>WENV180899073
ODOA01000482
[ODOA] human metagenome; G_DNA_Tongue dorsum
1069
996
-
Arg
CCT
[ENA]
¢þ
>WENV180899071
ODOA01000353
[ODOA] human metagenome; G_DNA_Tongue dorsum
1209
1136
-
Thr
TGT
[ENA]
¢þ
>WENV180899069
ODOA01000318
[ODOA] human metagenome; G_DNA_Tongue dorsum
1263
1188
-
Ala
TGC
[ENA]
¢þ
>WENV180899066
ODOA01000219
[ODOA] human metagenome; G_DNA_Tongue dorsum
1359
1284
-
Thr
CGT
[ENA]
¢þ
>WENV180899061
ODOA01000061
[ODOA] human metagenome; G_DNA_Tongue dorsum
1607
1680
+
His
GTG
[ENA]
¢þ
>WENV180899058
ODOA01000038
[ODOA] human metagenome; G_DNA_Tongue dorsum
1632
1716
+
Leu
TAG
[ENA]
¢þ
>WENV180899064
ODOA01000143
[ODOA] human metagenome; G_DNA_Tongue dorsum
1643
1570
-
Gly
TCC
[ENA]
¢þ
>WENV180899063
ODOA01000063
[ODOA] human metagenome; G_DNA_Tongue dorsum
1966
2053
+
Ser
CGA
[ENA]
¢þ
>WENV180899059
ODOA01000038
[ODOA] human metagenome; G_DNA_Tongue dorsum
2093
2168
+
Arg
TCG
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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