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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA gene List
[ODOL] human metagenome; G_DNA_Stool
HIT:
62 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV180902798
ODOL01006125
[ODOL] human metagenome; G_DNA_Stool
31
104
+
Val
CAC
[ENA]
¢þ
>WENV180902808
ODOL01009834
[ODOL] human metagenome; G_DNA_Stool
33
106
+
Gln
TTG
[ENA]
¢þ
>WENV180902790
ODOL01002415
[ODOL] human metagenome; G_DNA_Stool
36
108
+
Val
GAC
[ENA]
¢þ
>WENV180902800
ODOL01006723
[ODOL] human metagenome; G_DNA_Stool
43
117
+
Glu
TTC
[ENA]
¢þ
>WENV180902775
ODOL01001199
[ODOL] human metagenome; G_DNA_Stool
75
157
+
Tyr
GTA
[ENA]
¢þ
>WENV180902785
ODOL01001582
[ODOL] human metagenome; G_DNA_Stool
81
7
-
Val
TAC
[ENA]
¢þ
>WENV180902805
ODOL01008646
[ODOL] human metagenome; G_DNA_Stool
92
167
+
Thr
CGT
[ENA]
¢þ
>WENV180902807
ODOL01009597
[ODOL] human metagenome; G_DNA_Stool
101
25
-
fMet
CAT
[ENA]
¢þ
>WENV180902793
ODOL01002634
[ODOL] human metagenome; G_DNA_Stool
101
28
-
Arg
ACG
[ENA]
¢þ
>WENV180902804
ODOL01008183
[ODOL] human metagenome; G_DNA_Stool
110
34
-
Arg
ACG
[ENA]
¢þ
>WENV180902809
ODOL01009834
[ODOL] human metagenome; G_DNA_Stool
118
190
+
Cys
GCA
[ENA]
¢þ
>WENV180902771
ODOL01000726
[ODOL] human metagenome; G_DNA_Stool
120
45
-
Glu
TTC
[ENA]
¢þ
>WENV180902801
ODOL01006723
[ODOL] human metagenome; G_DNA_Stool
122
197
+
Val
TAC
[ENA]
¢þ
>WENV180902780
ODOL01001346
[ODOL] human metagenome; G_DNA_Stool
129
58
-
Cys
GCA
[ENA]
¢þ
>WENV180902748
ODOL01000023
[ODOL] human metagenome; G_DNA_Stool
135
207
+
Asn
GTT
[ENA]
¢þ
>WENV180902802
ODOL01007775
[ODOL] human metagenome; G_DNA_Stool
138
64
-
Pro
GGG
[ENA]
¢þ
>WENV180902806
ODOL01008728
[ODOL] human metagenome; G_DNA_Stool
146
73
-
Gly
TCC
[ENA]
¢þ
>WENV180902787
ODOL01001721
[ODOL] human metagenome; G_DNA_Stool
173
247
+
Ala
TGC
[ENA]
¢þ
>WENV180902792
ODOL01002602
[ODOL] human metagenome; G_DNA_Stool
178
253
+
Thr
TGT
[ENA]
¢þ
>WENV180902799
ODOL01006503
[ODOL] human metagenome; G_DNA_Stool
180
88
-
Ser
TGA
[ENA]
¢þ
>WENV180902763
ODOL01000429
[ODOL] human metagenome; G_DNA_Stool
196
122
-
Ala
TGC
[ENA]
¢þ
>WENV180902803
ODOL01008183
[ODOL] human metagenome; G_DNA_Stool
211
123
-
Leu
TAA
[ENA]
¢þ
>WENV180902773
ODOL01001032
[ODOL] human metagenome; G_DNA_Stool
217
290
+
Trp
CCA
[ENA]
¢þ
>WENV180902797
ODOL01003947
[ODOL] human metagenome; G_DNA_Stool
226
142
-
Leu
TAG
[ENA]
¢þ
>WENV180902779
ODOL01001346
[ODOL] human metagenome; G_DNA_Stool
230
157
-
Gly
GCC
[ENA]
¢þ
>WENV180902795
ODOL01003389
[ODOL] human metagenome; G_DNA_Stool
231
303
+
Thr
GGT
[ENA]
¢þ
>WENV180902796
ODOL01003907
[ODOL] human metagenome; G_DNA_Stool
234
310
+
Ile2
CAT
[ENA]
¢þ
>WENV180902782
ODOL01001403
[ODOL] human metagenome; G_DNA_Stool
244
169
-
Glu
CTC
[ENA]
¢þ
>WENV180902783
ODOL01001408
[ODOL] human metagenome; G_DNA_Stool
263
346
+
Leu
CAG
[ENA]
¢þ
>WENV180902770
ODOL01000726
[ODOL] human metagenome; G_DNA_Stool
274
199
-
Ala
GGC
[ENA]
¢þ
>WENV180902791
ODOL01002487
[ODOL] human metagenome; G_DNA_Stool
279
364
+
Ser
TGA
[ENA]
¢þ
>WENV180902794
ODOL01002917
[ODOL] human metagenome; G_DNA_Stool
296
370
+
Lys
CTT
[ENA]
¢þ
>WENV180902769
ODOL01000693
[ODOL] human metagenome; G_DNA_Stool
315
239
-
Pro
CGG
[ENA]
¢þ
>WENV180902789
ODOL01001853
[ODOL] human metagenome; G_DNA_Stool
334
249
-
Ser
TGA
[ENA]
¢þ
>WENV180902776
ODOL01001199
[ODOL] human metagenome; G_DNA_Stool
358
431
+
Thr
GGT
[ENA]
¢þ
>WENV180902778
ODOL01001268
[ODOL] human metagenome; G_DNA_Stool
366
441
+
Trp
CCA
[ENA]
¢þ
>WENV180902753
ODOL01000061
[ODOL] human metagenome; G_DNA_Stool
381
311
-
Met
CAT
[ENA]
¢þ
>WENV180902758
ODOL01000316
[ODOL] human metagenome; G_DNA_Stool
384
458
+
Asp
GTC
[ENA]
¢þ
>WENV180902788
ODOL01001853
[ODOL] human metagenome; G_DNA_Stool
440
358
-
Tyr
GTA
[ENA]
¢þ
>WENV180902781
ODOL01001403
[ODOL] human metagenome; G_DNA_Stool
452
380
-
Gln
CTG
[ENA]
¢þ
>WENV180902772
ODOL01001011
[ODOL] human metagenome; G_DNA_Stool
469
393
-
fMet
CAT
[ENA]
¢þ
>WENV180902774
ODOL01001097
[ODOL] human metagenome; G_DNA_Stool
484
557
+
Asn
GTT
[ENA]
¢þ
>WENV180902786
ODOL01001663
[ODOL] human metagenome; G_DNA_Stool
492
407
-
Ser
GGA
[ENA]
¢þ
>WENV180902777
ODOL01001199
[ODOL] human metagenome; G_DNA_Stool
496
570
+
Met
CAT
[ENA]
¢þ
>WENV180902759
ODOL01000316
[ODOL] human metagenome; G_DNA_Stool
519
594
+
Phe
GAA
[ENA]
¢þ
>WENV180902761
ODOL01000353
[ODOL] human metagenome; G_DNA_Stool
529
604
+
Lys
TTT
[ENA]
¢þ
>WENV180902784
ODOL01001520
[ODOL] human metagenome; G_DNA_Stool
545
470
-
Asn
GTT
[ENA]
¢þ
>WENV180902751
ODOL01000059
[ODOL] human metagenome; G_DNA_Stool
548
618
+
Val
TAC
[ENA]
¢þ
>WENV180902768
ODOL01000587
[ODOL] human metagenome; G_DNA_Stool
555
481
-
Lys
TTT
[ENA]
¢þ
>WENV180902766
ODOL01000538
[ODOL] human metagenome; G_DNA_Stool
632
715
+
Leu
TAG
[ENA]
¢þ
>WENV180902765
ODOL01000494
[ODOL] human metagenome; G_DNA_Stool
709
782
+
Ala
GGC
[ENA]
¢þ
>WENV180902767
ODOL01000553
[ODOL] human metagenome; G_DNA_Stool
815
890
+
His
GTG
[ENA]
¢þ
>WENV180902756
ODOL01000151
[ODOL] human metagenome; G_DNA_Stool
941
1016
+
Arg
TCT
[ENA]
¢þ
>WENV180902764
ODOL01000482
[ODOL] human metagenome; G_DNA_Stool
1069
996
-
Arg
CCT
[ENA]
¢þ
>WENV180902762
ODOL01000353
[ODOL] human metagenome; G_DNA_Stool
1209
1136
-
Thr
TGT
[ENA]
¢þ
>WENV180902760
ODOL01000318
[ODOL] human metagenome; G_DNA_Stool
1263
1188
-
Ala
TGC
[ENA]
¢þ
>WENV180902757
ODOL01000219
[ODOL] human metagenome; G_DNA_Stool
1359
1284
-
Thr
CGT
[ENA]
¢þ
>WENV180902752
ODOL01000061
[ODOL] human metagenome; G_DNA_Stool
1607
1680
+
His
GTG
[ENA]
¢þ
>WENV180902749
ODOL01000038
[ODOL] human metagenome; G_DNA_Stool
1632
1716
+
Leu
TAG
[ENA]
¢þ
>WENV180902755
ODOL01000143
[ODOL] human metagenome; G_DNA_Stool
1643
1570
-
Gly
TCC
[ENA]
¢þ
>WENV180902754
ODOL01000063
[ODOL] human metagenome; G_DNA_Stool
1966
2053
+
Ser
CGA
[ENA]
¢þ
>WENV180902750
ODOL01000038
[ODOL] human metagenome; G_DNA_Stool
2093
2168
+
Arg
TCG
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
BACK