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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA gene List
[ODOQ] human metagenome; G_DNA_Stool
HIT:
62 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV180903108
ODOQ01006125
[ODOQ] human metagenome; G_DNA_Stool
31
104
+
Val
CAC
[ENA]
¢þ
>WENV180903118
ODOQ01009834
[ODOQ] human metagenome; G_DNA_Stool
33
106
+
Gln
TTG
[ENA]
¢þ
>WENV180903100
ODOQ01002415
[ODOQ] human metagenome; G_DNA_Stool
36
108
+
Val
GAC
[ENA]
¢þ
>WENV180903110
ODOQ01006723
[ODOQ] human metagenome; G_DNA_Stool
43
117
+
Glu
TTC
[ENA]
¢þ
>WENV180903085
ODOQ01001199
[ODOQ] human metagenome; G_DNA_Stool
75
157
+
Tyr
GTA
[ENA]
¢þ
>WENV180903095
ODOQ01001582
[ODOQ] human metagenome; G_DNA_Stool
81
7
-
Val
TAC
[ENA]
¢þ
>WENV180903115
ODOQ01008646
[ODOQ] human metagenome; G_DNA_Stool
92
167
+
Thr
CGT
[ENA]
¢þ
>WENV180903117
ODOQ01009597
[ODOQ] human metagenome; G_DNA_Stool
101
25
-
fMet
CAT
[ENA]
¢þ
>WENV180903103
ODOQ01002634
[ODOQ] human metagenome; G_DNA_Stool
101
28
-
Arg
ACG
[ENA]
¢þ
>WENV180903114
ODOQ01008183
[ODOQ] human metagenome; G_DNA_Stool
110
34
-
Arg
ACG
[ENA]
¢þ
>WENV180903119
ODOQ01009834
[ODOQ] human metagenome; G_DNA_Stool
118
190
+
Cys
GCA
[ENA]
¢þ
>WENV180903081
ODOQ01000726
[ODOQ] human metagenome; G_DNA_Stool
120
45
-
Glu
TTC
[ENA]
¢þ
>WENV180903111
ODOQ01006723
[ODOQ] human metagenome; G_DNA_Stool
122
197
+
Val
TAC
[ENA]
¢þ
>WENV180903090
ODOQ01001346
[ODOQ] human metagenome; G_DNA_Stool
129
58
-
Cys
GCA
[ENA]
¢þ
>WENV180903058
ODOQ01000023
[ODOQ] human metagenome; G_DNA_Stool
135
207
+
Asn
GTT
[ENA]
¢þ
>WENV180903112
ODOQ01007775
[ODOQ] human metagenome; G_DNA_Stool
138
64
-
Pro
GGG
[ENA]
¢þ
>WENV180903116
ODOQ01008728
[ODOQ] human metagenome; G_DNA_Stool
146
73
-
Gly
TCC
[ENA]
¢þ
>WENV180903097
ODOQ01001721
[ODOQ] human metagenome; G_DNA_Stool
173
247
+
Ala
TGC
[ENA]
¢þ
>WENV180903102
ODOQ01002602
[ODOQ] human metagenome; G_DNA_Stool
178
253
+
Thr
TGT
[ENA]
¢þ
>WENV180903109
ODOQ01006503
[ODOQ] human metagenome; G_DNA_Stool
180
88
-
Ser
TGA
[ENA]
¢þ
>WENV180903073
ODOQ01000429
[ODOQ] human metagenome; G_DNA_Stool
196
122
-
Ala
TGC
[ENA]
¢þ
>WENV180903113
ODOQ01008183
[ODOQ] human metagenome; G_DNA_Stool
211
123
-
Leu
TAA
[ENA]
¢þ
>WENV180903083
ODOQ01001032
[ODOQ] human metagenome; G_DNA_Stool
217
290
+
Trp
CCA
[ENA]
¢þ
>WENV180903107
ODOQ01003947
[ODOQ] human metagenome; G_DNA_Stool
226
142
-
Leu
TAG
[ENA]
¢þ
>WENV180903089
ODOQ01001346
[ODOQ] human metagenome; G_DNA_Stool
230
157
-
Gly
GCC
[ENA]
¢þ
>WENV180903105
ODOQ01003389
[ODOQ] human metagenome; G_DNA_Stool
231
303
+
Thr
GGT
[ENA]
¢þ
>WENV180903106
ODOQ01003907
[ODOQ] human metagenome; G_DNA_Stool
234
310
+
Ile2
CAT
[ENA]
¢þ
>WENV180903092
ODOQ01001403
[ODOQ] human metagenome; G_DNA_Stool
244
169
-
Glu
CTC
[ENA]
¢þ
>WENV180903093
ODOQ01001408
[ODOQ] human metagenome; G_DNA_Stool
263
346
+
Leu
CAG
[ENA]
¢þ
>WENV180903080
ODOQ01000726
[ODOQ] human metagenome; G_DNA_Stool
274
199
-
Ala
GGC
[ENA]
¢þ
>WENV180903101
ODOQ01002487
[ODOQ] human metagenome; G_DNA_Stool
279
364
+
Ser
TGA
[ENA]
¢þ
>WENV180903104
ODOQ01002917
[ODOQ] human metagenome; G_DNA_Stool
296
370
+
Lys
CTT
[ENA]
¢þ
>WENV180903079
ODOQ01000693
[ODOQ] human metagenome; G_DNA_Stool
315
239
-
Pro
CGG
[ENA]
¢þ
>WENV180903099
ODOQ01001853
[ODOQ] human metagenome; G_DNA_Stool
334
249
-
Ser
TGA
[ENA]
¢þ
>WENV180903086
ODOQ01001199
[ODOQ] human metagenome; G_DNA_Stool
358
431
+
Thr
GGT
[ENA]
¢þ
>WENV180903088
ODOQ01001268
[ODOQ] human metagenome; G_DNA_Stool
366
441
+
Trp
CCA
[ENA]
¢þ
>WENV180903063
ODOQ01000061
[ODOQ] human metagenome; G_DNA_Stool
381
311
-
Met
CAT
[ENA]
¢þ
>WENV180903068
ODOQ01000316
[ODOQ] human metagenome; G_DNA_Stool
384
458
+
Asp
GTC
[ENA]
¢þ
>WENV180903098
ODOQ01001853
[ODOQ] human metagenome; G_DNA_Stool
440
358
-
Tyr
GTA
[ENA]
¢þ
>WENV180903091
ODOQ01001403
[ODOQ] human metagenome; G_DNA_Stool
452
380
-
Gln
CTG
[ENA]
¢þ
>WENV180903082
ODOQ01001011
[ODOQ] human metagenome; G_DNA_Stool
469
393
-
fMet
CAT
[ENA]
¢þ
>WENV180903084
ODOQ01001097
[ODOQ] human metagenome; G_DNA_Stool
484
557
+
Asn
GTT
[ENA]
¢þ
>WENV180903096
ODOQ01001663
[ODOQ] human metagenome; G_DNA_Stool
492
407
-
Ser
GGA
[ENA]
¢þ
>WENV180903087
ODOQ01001199
[ODOQ] human metagenome; G_DNA_Stool
496
570
+
Met
CAT
[ENA]
¢þ
>WENV180903069
ODOQ01000316
[ODOQ] human metagenome; G_DNA_Stool
519
594
+
Phe
GAA
[ENA]
¢þ
>WENV180903071
ODOQ01000353
[ODOQ] human metagenome; G_DNA_Stool
529
604
+
Lys
TTT
[ENA]
¢þ
>WENV180903094
ODOQ01001520
[ODOQ] human metagenome; G_DNA_Stool
545
470
-
Asn
GTT
[ENA]
¢þ
>WENV180903061
ODOQ01000059
[ODOQ] human metagenome; G_DNA_Stool
548
618
+
Val
TAC
[ENA]
¢þ
>WENV180903078
ODOQ01000587
[ODOQ] human metagenome; G_DNA_Stool
555
481
-
Lys
TTT
[ENA]
¢þ
>WENV180903076
ODOQ01000538
[ODOQ] human metagenome; G_DNA_Stool
632
715
+
Leu
TAG
[ENA]
¢þ
>WENV180903075
ODOQ01000494
[ODOQ] human metagenome; G_DNA_Stool
709
782
+
Ala
GGC
[ENA]
¢þ
>WENV180903077
ODOQ01000553
[ODOQ] human metagenome; G_DNA_Stool
815
890
+
His
GTG
[ENA]
¢þ
>WENV180903066
ODOQ01000151
[ODOQ] human metagenome; G_DNA_Stool
941
1016
+
Arg
TCT
[ENA]
¢þ
>WENV180903074
ODOQ01000482
[ODOQ] human metagenome; G_DNA_Stool
1069
996
-
Arg
CCT
[ENA]
¢þ
>WENV180903072
ODOQ01000353
[ODOQ] human metagenome; G_DNA_Stool
1209
1136
-
Thr
TGT
[ENA]
¢þ
>WENV180903070
ODOQ01000318
[ODOQ] human metagenome; G_DNA_Stool
1263
1188
-
Ala
TGC
[ENA]
¢þ
>WENV180903067
ODOQ01000219
[ODOQ] human metagenome; G_DNA_Stool
1359
1284
-
Thr
CGT
[ENA]
¢þ
>WENV180903062
ODOQ01000061
[ODOQ] human metagenome; G_DNA_Stool
1607
1680
+
His
GTG
[ENA]
¢þ
>WENV180903059
ODOQ01000038
[ODOQ] human metagenome; G_DNA_Stool
1632
1716
+
Leu
TAG
[ENA]
¢þ
>WENV180903065
ODOQ01000143
[ODOQ] human metagenome; G_DNA_Stool
1643
1570
-
Gly
TCC
[ENA]
¢þ
>WENV180903064
ODOQ01000063
[ODOQ] human metagenome; G_DNA_Stool
1966
2053
+
Ser
CGA
[ENA]
¢þ
>WENV180903060
ODOQ01000038
[ODOQ] human metagenome; G_DNA_Stool
2093
2168
+
Arg
TCG
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
BACK