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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA gene List
[ODOT] human metagenome; G_DNA_Mid vagina
HIT:
62 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV180903294
ODOT01006125
[ODOT] human metagenome; G_DNA_Mid vagina
31
104
+
Val
CAC
[ENA]
¢þ
>WENV180903304
ODOT01009834
[ODOT] human metagenome; G_DNA_Mid vagina
33
106
+
Gln
TTG
[ENA]
¢þ
>WENV180903286
ODOT01002415
[ODOT] human metagenome; G_DNA_Mid vagina
36
108
+
Val
GAC
[ENA]
¢þ
>WENV180903296
ODOT01006723
[ODOT] human metagenome; G_DNA_Mid vagina
43
117
+
Glu
TTC
[ENA]
¢þ
>WENV180903271
ODOT01001199
[ODOT] human metagenome; G_DNA_Mid vagina
75
157
+
Tyr
GTA
[ENA]
¢þ
>WENV180903281
ODOT01001582
[ODOT] human metagenome; G_DNA_Mid vagina
81
7
-
Val
TAC
[ENA]
¢þ
>WENV180903301
ODOT01008646
[ODOT] human metagenome; G_DNA_Mid vagina
92
167
+
Thr
CGT
[ENA]
¢þ
>WENV180903303
ODOT01009597
[ODOT] human metagenome; G_DNA_Mid vagina
101
25
-
fMet
CAT
[ENA]
¢þ
>WENV180903289
ODOT01002634
[ODOT] human metagenome; G_DNA_Mid vagina
101
28
-
Arg
ACG
[ENA]
¢þ
>WENV180903300
ODOT01008183
[ODOT] human metagenome; G_DNA_Mid vagina
110
34
-
Arg
ACG
[ENA]
¢þ
>WENV180903305
ODOT01009834
[ODOT] human metagenome; G_DNA_Mid vagina
118
190
+
Cys
GCA
[ENA]
¢þ
>WENV180903267
ODOT01000726
[ODOT] human metagenome; G_DNA_Mid vagina
120
45
-
Glu
TTC
[ENA]
¢þ
>WENV180903297
ODOT01006723
[ODOT] human metagenome; G_DNA_Mid vagina
122
197
+
Val
TAC
[ENA]
¢þ
>WENV180903276
ODOT01001346
[ODOT] human metagenome; G_DNA_Mid vagina
129
58
-
Cys
GCA
[ENA]
¢þ
>WENV180903244
ODOT01000023
[ODOT] human metagenome; G_DNA_Mid vagina
135
207
+
Asn
GTT
[ENA]
¢þ
>WENV180903298
ODOT01007775
[ODOT] human metagenome; G_DNA_Mid vagina
138
64
-
Pro
GGG
[ENA]
¢þ
>WENV180903302
ODOT01008728
[ODOT] human metagenome; G_DNA_Mid vagina
146
73
-
Gly
TCC
[ENA]
¢þ
>WENV180903283
ODOT01001721
[ODOT] human metagenome; G_DNA_Mid vagina
173
247
+
Ala
TGC
[ENA]
¢þ
>WENV180903288
ODOT01002602
[ODOT] human metagenome; G_DNA_Mid vagina
178
253
+
Thr
TGT
[ENA]
¢þ
>WENV180903295
ODOT01006503
[ODOT] human metagenome; G_DNA_Mid vagina
180
88
-
Ser
TGA
[ENA]
¢þ
>WENV180903259
ODOT01000429
[ODOT] human metagenome; G_DNA_Mid vagina
196
122
-
Ala
TGC
[ENA]
¢þ
>WENV180903299
ODOT01008183
[ODOT] human metagenome; G_DNA_Mid vagina
211
123
-
Leu
TAA
[ENA]
¢þ
>WENV180903269
ODOT01001032
[ODOT] human metagenome; G_DNA_Mid vagina
217
290
+
Trp
CCA
[ENA]
¢þ
>WENV180903293
ODOT01003947
[ODOT] human metagenome; G_DNA_Mid vagina
226
142
-
Leu
TAG
[ENA]
¢þ
>WENV180903275
ODOT01001346
[ODOT] human metagenome; G_DNA_Mid vagina
230
157
-
Gly
GCC
[ENA]
¢þ
>WENV180903291
ODOT01003389
[ODOT] human metagenome; G_DNA_Mid vagina
231
303
+
Thr
GGT
[ENA]
¢þ
>WENV180903292
ODOT01003907
[ODOT] human metagenome; G_DNA_Mid vagina
234
310
+
Ile2
CAT
[ENA]
¢þ
>WENV180903278
ODOT01001403
[ODOT] human metagenome; G_DNA_Mid vagina
244
169
-
Glu
CTC
[ENA]
¢þ
>WENV180903279
ODOT01001408
[ODOT] human metagenome; G_DNA_Mid vagina
263
346
+
Leu
CAG
[ENA]
¢þ
>WENV180903266
ODOT01000726
[ODOT] human metagenome; G_DNA_Mid vagina
274
199
-
Ala
GGC
[ENA]
¢þ
>WENV180903287
ODOT01002487
[ODOT] human metagenome; G_DNA_Mid vagina
279
364
+
Ser
TGA
[ENA]
¢þ
>WENV180903290
ODOT01002917
[ODOT] human metagenome; G_DNA_Mid vagina
296
370
+
Lys
CTT
[ENA]
¢þ
>WENV180903265
ODOT01000693
[ODOT] human metagenome; G_DNA_Mid vagina
315
239
-
Pro
CGG
[ENA]
¢þ
>WENV180903285
ODOT01001853
[ODOT] human metagenome; G_DNA_Mid vagina
334
249
-
Ser
TGA
[ENA]
¢þ
>WENV180903272
ODOT01001199
[ODOT] human metagenome; G_DNA_Mid vagina
358
431
+
Thr
GGT
[ENA]
¢þ
>WENV180903274
ODOT01001268
[ODOT] human metagenome; G_DNA_Mid vagina
366
441
+
Trp
CCA
[ENA]
¢þ
>WENV180903249
ODOT01000061
[ODOT] human metagenome; G_DNA_Mid vagina
381
311
-
Met
CAT
[ENA]
¢þ
>WENV180903254
ODOT01000316
[ODOT] human metagenome; G_DNA_Mid vagina
384
458
+
Asp
GTC
[ENA]
¢þ
>WENV180903284
ODOT01001853
[ODOT] human metagenome; G_DNA_Mid vagina
440
358
-
Tyr
GTA
[ENA]
¢þ
>WENV180903277
ODOT01001403
[ODOT] human metagenome; G_DNA_Mid vagina
452
380
-
Gln
CTG
[ENA]
¢þ
>WENV180903268
ODOT01001011
[ODOT] human metagenome; G_DNA_Mid vagina
469
393
-
fMet
CAT
[ENA]
¢þ
>WENV180903270
ODOT01001097
[ODOT] human metagenome; G_DNA_Mid vagina
484
557
+
Asn
GTT
[ENA]
¢þ
>WENV180903282
ODOT01001663
[ODOT] human metagenome; G_DNA_Mid vagina
492
407
-
Ser
GGA
[ENA]
¢þ
>WENV180903273
ODOT01001199
[ODOT] human metagenome; G_DNA_Mid vagina
496
570
+
Met
CAT
[ENA]
¢þ
>WENV180903255
ODOT01000316
[ODOT] human metagenome; G_DNA_Mid vagina
519
594
+
Phe
GAA
[ENA]
¢þ
>WENV180903257
ODOT01000353
[ODOT] human metagenome; G_DNA_Mid vagina
529
604
+
Lys
TTT
[ENA]
¢þ
>WENV180903280
ODOT01001520
[ODOT] human metagenome; G_DNA_Mid vagina
545
470
-
Asn
GTT
[ENA]
¢þ
>WENV180903247
ODOT01000059
[ODOT] human metagenome; G_DNA_Mid vagina
548
618
+
Val
TAC
[ENA]
¢þ
>WENV180903264
ODOT01000587
[ODOT] human metagenome; G_DNA_Mid vagina
555
481
-
Lys
TTT
[ENA]
¢þ
>WENV180903262
ODOT01000538
[ODOT] human metagenome; G_DNA_Mid vagina
632
715
+
Leu
TAG
[ENA]
¢þ
>WENV180903261
ODOT01000494
[ODOT] human metagenome; G_DNA_Mid vagina
709
782
+
Ala
GGC
[ENA]
¢þ
>WENV180903263
ODOT01000553
[ODOT] human metagenome; G_DNA_Mid vagina
815
890
+
His
GTG
[ENA]
¢þ
>WENV180903252
ODOT01000151
[ODOT] human metagenome; G_DNA_Mid vagina
941
1016
+
Arg
TCT
[ENA]
¢þ
>WENV180903260
ODOT01000482
[ODOT] human metagenome; G_DNA_Mid vagina
1069
996
-
Arg
CCT
[ENA]
¢þ
>WENV180903258
ODOT01000353
[ODOT] human metagenome; G_DNA_Mid vagina
1209
1136
-
Thr
TGT
[ENA]
¢þ
>WENV180903256
ODOT01000318
[ODOT] human metagenome; G_DNA_Mid vagina
1263
1188
-
Ala
TGC
[ENA]
¢þ
>WENV180903253
ODOT01000219
[ODOT] human metagenome; G_DNA_Mid vagina
1359
1284
-
Thr
CGT
[ENA]
¢þ
>WENV180903248
ODOT01000061
[ODOT] human metagenome; G_DNA_Mid vagina
1607
1680
+
His
GTG
[ENA]
¢þ
>WENV180903245
ODOT01000038
[ODOT] human metagenome; G_DNA_Mid vagina
1632
1716
+
Leu
TAG
[ENA]
¢þ
>WENV180903251
ODOT01000143
[ODOT] human metagenome; G_DNA_Mid vagina
1643
1570
-
Gly
TCC
[ENA]
¢þ
>WENV180903250
ODOT01000063
[ODOT] human metagenome; G_DNA_Mid vagina
1966
2053
+
Ser
CGA
[ENA]
¢þ
>WENV180903246
ODOT01000038
[ODOT] human metagenome; G_DNA_Mid vagina
2093
2168
+
Arg
TCG
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
BACK