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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA gene List
[ODPA] human metagenome; G_DNA_Buccal mucosa
HIT:
62 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV180903728
ODPA01006125
[ODPA] human metagenome; G_DNA_Buccal mucosa
31
104
+
Val
CAC
[ENA]
¢þ
>WENV180903738
ODPA01009834
[ODPA] human metagenome; G_DNA_Buccal mucosa
33
106
+
Gln
TTG
[ENA]
¢þ
>WENV180903720
ODPA01002415
[ODPA] human metagenome; G_DNA_Buccal mucosa
36
108
+
Val
GAC
[ENA]
¢þ
>WENV180903730
ODPA01006723
[ODPA] human metagenome; G_DNA_Buccal mucosa
43
117
+
Glu
TTC
[ENA]
¢þ
>WENV180903705
ODPA01001199
[ODPA] human metagenome; G_DNA_Buccal mucosa
75
157
+
Tyr
GTA
[ENA]
¢þ
>WENV180903715
ODPA01001582
[ODPA] human metagenome; G_DNA_Buccal mucosa
81
7
-
Val
TAC
[ENA]
¢þ
>WENV180903735
ODPA01008646
[ODPA] human metagenome; G_DNA_Buccal mucosa
92
167
+
Thr
CGT
[ENA]
¢þ
>WENV180903737
ODPA01009597
[ODPA] human metagenome; G_DNA_Buccal mucosa
101
25
-
fMet
CAT
[ENA]
¢þ
>WENV180903723
ODPA01002634
[ODPA] human metagenome; G_DNA_Buccal mucosa
101
28
-
Arg
ACG
[ENA]
¢þ
>WENV180903734
ODPA01008183
[ODPA] human metagenome; G_DNA_Buccal mucosa
110
34
-
Arg
ACG
[ENA]
¢þ
>WENV180903739
ODPA01009834
[ODPA] human metagenome; G_DNA_Buccal mucosa
118
190
+
Cys
GCA
[ENA]
¢þ
>WENV180903701
ODPA01000726
[ODPA] human metagenome; G_DNA_Buccal mucosa
120
45
-
Glu
TTC
[ENA]
¢þ
>WENV180903731
ODPA01006723
[ODPA] human metagenome; G_DNA_Buccal mucosa
122
197
+
Val
TAC
[ENA]
¢þ
>WENV180903710
ODPA01001346
[ODPA] human metagenome; G_DNA_Buccal mucosa
129
58
-
Cys
GCA
[ENA]
¢þ
>WENV180903678
ODPA01000023
[ODPA] human metagenome; G_DNA_Buccal mucosa
135
207
+
Asn
GTT
[ENA]
¢þ
>WENV180903732
ODPA01007775
[ODPA] human metagenome; G_DNA_Buccal mucosa
138
64
-
Pro
GGG
[ENA]
¢þ
>WENV180903736
ODPA01008728
[ODPA] human metagenome; G_DNA_Buccal mucosa
146
73
-
Gly
TCC
[ENA]
¢þ
>WENV180903717
ODPA01001721
[ODPA] human metagenome; G_DNA_Buccal mucosa
173
247
+
Ala
TGC
[ENA]
¢þ
>WENV180903722
ODPA01002602
[ODPA] human metagenome; G_DNA_Buccal mucosa
178
253
+
Thr
TGT
[ENA]
¢þ
>WENV180903729
ODPA01006503
[ODPA] human metagenome; G_DNA_Buccal mucosa
180
88
-
Ser
TGA
[ENA]
¢þ
>WENV180903693
ODPA01000429
[ODPA] human metagenome; G_DNA_Buccal mucosa
196
122
-
Ala
TGC
[ENA]
¢þ
>WENV180903733
ODPA01008183
[ODPA] human metagenome; G_DNA_Buccal mucosa
211
123
-
Leu
TAA
[ENA]
¢þ
>WENV180903703
ODPA01001032
[ODPA] human metagenome; G_DNA_Buccal mucosa
217
290
+
Trp
CCA
[ENA]
¢þ
>WENV180903727
ODPA01003947
[ODPA] human metagenome; G_DNA_Buccal mucosa
226
142
-
Leu
TAG
[ENA]
¢þ
>WENV180903709
ODPA01001346
[ODPA] human metagenome; G_DNA_Buccal mucosa
230
157
-
Gly
GCC
[ENA]
¢þ
>WENV180903725
ODPA01003389
[ODPA] human metagenome; G_DNA_Buccal mucosa
231
303
+
Thr
GGT
[ENA]
¢þ
>WENV180903726
ODPA01003907
[ODPA] human metagenome; G_DNA_Buccal mucosa
234
310
+
Ile2
CAT
[ENA]
¢þ
>WENV180903712
ODPA01001403
[ODPA] human metagenome; G_DNA_Buccal mucosa
244
169
-
Glu
CTC
[ENA]
¢þ
>WENV180903713
ODPA01001408
[ODPA] human metagenome; G_DNA_Buccal mucosa
263
346
+
Leu
CAG
[ENA]
¢þ
>WENV180903700
ODPA01000726
[ODPA] human metagenome; G_DNA_Buccal mucosa
274
199
-
Ala
GGC
[ENA]
¢þ
>WENV180903721
ODPA01002487
[ODPA] human metagenome; G_DNA_Buccal mucosa
279
364
+
Ser
TGA
[ENA]
¢þ
>WENV180903724
ODPA01002917
[ODPA] human metagenome; G_DNA_Buccal mucosa
296
370
+
Lys
CTT
[ENA]
¢þ
>WENV180903699
ODPA01000693
[ODPA] human metagenome; G_DNA_Buccal mucosa
315
239
-
Pro
CGG
[ENA]
¢þ
>WENV180903719
ODPA01001853
[ODPA] human metagenome; G_DNA_Buccal mucosa
334
249
-
Ser
TGA
[ENA]
¢þ
>WENV180903706
ODPA01001199
[ODPA] human metagenome; G_DNA_Buccal mucosa
358
431
+
Thr
GGT
[ENA]
¢þ
>WENV180903708
ODPA01001268
[ODPA] human metagenome; G_DNA_Buccal mucosa
366
441
+
Trp
CCA
[ENA]
¢þ
>WENV180903683
ODPA01000061
[ODPA] human metagenome; G_DNA_Buccal mucosa
381
311
-
Met
CAT
[ENA]
¢þ
>WENV180903688
ODPA01000316
[ODPA] human metagenome; G_DNA_Buccal mucosa
384
458
+
Asp
GTC
[ENA]
¢þ
>WENV180903718
ODPA01001853
[ODPA] human metagenome; G_DNA_Buccal mucosa
440
358
-
Tyr
GTA
[ENA]
¢þ
>WENV180903711
ODPA01001403
[ODPA] human metagenome; G_DNA_Buccal mucosa
452
380
-
Gln
CTG
[ENA]
¢þ
>WENV180903702
ODPA01001011
[ODPA] human metagenome; G_DNA_Buccal mucosa
469
393
-
fMet
CAT
[ENA]
¢þ
>WENV180903704
ODPA01001097
[ODPA] human metagenome; G_DNA_Buccal mucosa
484
557
+
Asn
GTT
[ENA]
¢þ
>WENV180903716
ODPA01001663
[ODPA] human metagenome; G_DNA_Buccal mucosa
492
407
-
Ser
GGA
[ENA]
¢þ
>WENV180903707
ODPA01001199
[ODPA] human metagenome; G_DNA_Buccal mucosa
496
570
+
Met
CAT
[ENA]
¢þ
>WENV180903689
ODPA01000316
[ODPA] human metagenome; G_DNA_Buccal mucosa
519
594
+
Phe
GAA
[ENA]
¢þ
>WENV180903691
ODPA01000353
[ODPA] human metagenome; G_DNA_Buccal mucosa
529
604
+
Lys
TTT
[ENA]
¢þ
>WENV180903714
ODPA01001520
[ODPA] human metagenome; G_DNA_Buccal mucosa
545
470
-
Asn
GTT
[ENA]
¢þ
>WENV180903681
ODPA01000059
[ODPA] human metagenome; G_DNA_Buccal mucosa
548
618
+
Val
TAC
[ENA]
¢þ
>WENV180903698
ODPA01000587
[ODPA] human metagenome; G_DNA_Buccal mucosa
555
481
-
Lys
TTT
[ENA]
¢þ
>WENV180903696
ODPA01000538
[ODPA] human metagenome; G_DNA_Buccal mucosa
632
715
+
Leu
TAG
[ENA]
¢þ
>WENV180903695
ODPA01000494
[ODPA] human metagenome; G_DNA_Buccal mucosa
709
782
+
Ala
GGC
[ENA]
¢þ
>WENV180903697
ODPA01000553
[ODPA] human metagenome; G_DNA_Buccal mucosa
815
890
+
His
GTG
[ENA]
¢þ
>WENV180903686
ODPA01000151
[ODPA] human metagenome; G_DNA_Buccal mucosa
941
1016
+
Arg
TCT
[ENA]
¢þ
>WENV180903694
ODPA01000482
[ODPA] human metagenome; G_DNA_Buccal mucosa
1069
996
-
Arg
CCT
[ENA]
¢þ
>WENV180903692
ODPA01000353
[ODPA] human metagenome; G_DNA_Buccal mucosa
1209
1136
-
Thr
TGT
[ENA]
¢þ
>WENV180903690
ODPA01000318
[ODPA] human metagenome; G_DNA_Buccal mucosa
1263
1188
-
Ala
TGC
[ENA]
¢þ
>WENV180903687
ODPA01000219
[ODPA] human metagenome; G_DNA_Buccal mucosa
1359
1284
-
Thr
CGT
[ENA]
¢þ
>WENV180903682
ODPA01000061
[ODPA] human metagenome; G_DNA_Buccal mucosa
1607
1680
+
His
GTG
[ENA]
¢þ
>WENV180903679
ODPA01000038
[ODPA] human metagenome; G_DNA_Buccal mucosa
1632
1716
+
Leu
TAG
[ENA]
¢þ
>WENV180903685
ODPA01000143
[ODPA] human metagenome; G_DNA_Buccal mucosa
1643
1570
-
Gly
TCC
[ENA]
¢þ
>WENV180903684
ODPA01000063
[ODPA] human metagenome; G_DNA_Buccal mucosa
1966
2053
+
Ser
CGA
[ENA]
¢þ
>WENV180903680
ODPA01000038
[ODPA] human metagenome; G_DNA_Buccal mucosa
2093
2168
+
Arg
TCG
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
BACK