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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
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HOW TO USE
tRNA gene List
[ODQP] human metagenome; G_DNA_Supragingival plaque
HIT:
62 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV180909751
ODQP01006125
[ODQP] human metagenome; G_DNA_Supragingival plaque
31
104
+
Val
CAC
[ENA]
¢þ
>WENV180909761
ODQP01009834
[ODQP] human metagenome; G_DNA_Supragingival plaque
33
106
+
Gln
TTG
[ENA]
¢þ
>WENV180909743
ODQP01002415
[ODQP] human metagenome; G_DNA_Supragingival plaque
36
108
+
Val
GAC
[ENA]
¢þ
>WENV180909753
ODQP01006723
[ODQP] human metagenome; G_DNA_Supragingival plaque
43
117
+
Glu
TTC
[ENA]
¢þ
>WENV180909728
ODQP01001199
[ODQP] human metagenome; G_DNA_Supragingival plaque
75
157
+
Tyr
GTA
[ENA]
¢þ
>WENV180909738
ODQP01001582
[ODQP] human metagenome; G_DNA_Supragingival plaque
81
7
-
Val
TAC
[ENA]
¢þ
>WENV180909758
ODQP01008646
[ODQP] human metagenome; G_DNA_Supragingival plaque
92
167
+
Thr
CGT
[ENA]
¢þ
>WENV180909760
ODQP01009597
[ODQP] human metagenome; G_DNA_Supragingival plaque
101
25
-
fMet
CAT
[ENA]
¢þ
>WENV180909746
ODQP01002634
[ODQP] human metagenome; G_DNA_Supragingival plaque
101
28
-
Arg
ACG
[ENA]
¢þ
>WENV180909757
ODQP01008183
[ODQP] human metagenome; G_DNA_Supragingival plaque
110
34
-
Arg
ACG
[ENA]
¢þ
>WENV180909762
ODQP01009834
[ODQP] human metagenome; G_DNA_Supragingival plaque
118
190
+
Cys
GCA
[ENA]
¢þ
>WENV180909724
ODQP01000726
[ODQP] human metagenome; G_DNA_Supragingival plaque
120
45
-
Glu
TTC
[ENA]
¢þ
>WENV180909754
ODQP01006723
[ODQP] human metagenome; G_DNA_Supragingival plaque
122
197
+
Val
TAC
[ENA]
¢þ
>WENV180909733
ODQP01001346
[ODQP] human metagenome; G_DNA_Supragingival plaque
129
58
-
Cys
GCA
[ENA]
¢þ
>WENV180909701
ODQP01000023
[ODQP] human metagenome; G_DNA_Supragingival plaque
135
207
+
Asn
GTT
[ENA]
¢þ
>WENV180909755
ODQP01007775
[ODQP] human metagenome; G_DNA_Supragingival plaque
138
64
-
Pro
GGG
[ENA]
¢þ
>WENV180909759
ODQP01008728
[ODQP] human metagenome; G_DNA_Supragingival plaque
146
73
-
Gly
TCC
[ENA]
¢þ
>WENV180909740
ODQP01001721
[ODQP] human metagenome; G_DNA_Supragingival plaque
173
247
+
Ala
TGC
[ENA]
¢þ
>WENV180909745
ODQP01002602
[ODQP] human metagenome; G_DNA_Supragingival plaque
178
253
+
Thr
TGT
[ENA]
¢þ
>WENV180909752
ODQP01006503
[ODQP] human metagenome; G_DNA_Supragingival plaque
180
88
-
Ser
TGA
[ENA]
¢þ
>WENV180909716
ODQP01000429
[ODQP] human metagenome; G_DNA_Supragingival plaque
196
122
-
Ala
TGC
[ENA]
¢þ
>WENV180909756
ODQP01008183
[ODQP] human metagenome; G_DNA_Supragingival plaque
211
123
-
Leu
TAA
[ENA]
¢þ
>WENV180909726
ODQP01001032
[ODQP] human metagenome; G_DNA_Supragingival plaque
217
290
+
Trp
CCA
[ENA]
¢þ
>WENV180909750
ODQP01003947
[ODQP] human metagenome; G_DNA_Supragingival plaque
226
142
-
Leu
TAG
[ENA]
¢þ
>WENV180909732
ODQP01001346
[ODQP] human metagenome; G_DNA_Supragingival plaque
230
157
-
Gly
GCC
[ENA]
¢þ
>WENV180909748
ODQP01003389
[ODQP] human metagenome; G_DNA_Supragingival plaque
231
303
+
Thr
GGT
[ENA]
¢þ
>WENV180909749
ODQP01003907
[ODQP] human metagenome; G_DNA_Supragingival plaque
234
310
+
Ile2
CAT
[ENA]
¢þ
>WENV180909735
ODQP01001403
[ODQP] human metagenome; G_DNA_Supragingival plaque
244
169
-
Glu
CTC
[ENA]
¢þ
>WENV180909736
ODQP01001408
[ODQP] human metagenome; G_DNA_Supragingival plaque
263
346
+
Leu
CAG
[ENA]
¢þ
>WENV180909723
ODQP01000726
[ODQP] human metagenome; G_DNA_Supragingival plaque
274
199
-
Ala
GGC
[ENA]
¢þ
>WENV180909744
ODQP01002487
[ODQP] human metagenome; G_DNA_Supragingival plaque
279
364
+
Ser
TGA
[ENA]
¢þ
>WENV180909747
ODQP01002917
[ODQP] human metagenome; G_DNA_Supragingival plaque
296
370
+
Lys
CTT
[ENA]
¢þ
>WENV180909722
ODQP01000693
[ODQP] human metagenome; G_DNA_Supragingival plaque
315
239
-
Pro
CGG
[ENA]
¢þ
>WENV180909742
ODQP01001853
[ODQP] human metagenome; G_DNA_Supragingival plaque
334
249
-
Ser
TGA
[ENA]
¢þ
>WENV180909729
ODQP01001199
[ODQP] human metagenome; G_DNA_Supragingival plaque
358
431
+
Thr
GGT
[ENA]
¢þ
>WENV180909731
ODQP01001268
[ODQP] human metagenome; G_DNA_Supragingival plaque
366
441
+
Trp
CCA
[ENA]
¢þ
>WENV180909706
ODQP01000061
[ODQP] human metagenome; G_DNA_Supragingival plaque
381
311
-
Met
CAT
[ENA]
¢þ
>WENV180909711
ODQP01000316
[ODQP] human metagenome; G_DNA_Supragingival plaque
384
458
+
Asp
GTC
[ENA]
¢þ
>WENV180909741
ODQP01001853
[ODQP] human metagenome; G_DNA_Supragingival plaque
440
358
-
Tyr
GTA
[ENA]
¢þ
>WENV180909734
ODQP01001403
[ODQP] human metagenome; G_DNA_Supragingival plaque
452
380
-
Gln
CTG
[ENA]
¢þ
>WENV180909725
ODQP01001011
[ODQP] human metagenome; G_DNA_Supragingival plaque
469
393
-
fMet
CAT
[ENA]
¢þ
>WENV180909727
ODQP01001097
[ODQP] human metagenome; G_DNA_Supragingival plaque
484
557
+
Asn
GTT
[ENA]
¢þ
>WENV180909739
ODQP01001663
[ODQP] human metagenome; G_DNA_Supragingival plaque
492
407
-
Ser
GGA
[ENA]
¢þ
>WENV180909730
ODQP01001199
[ODQP] human metagenome; G_DNA_Supragingival plaque
496
570
+
Met
CAT
[ENA]
¢þ
>WENV180909712
ODQP01000316
[ODQP] human metagenome; G_DNA_Supragingival plaque
519
594
+
Phe
GAA
[ENA]
¢þ
>WENV180909714
ODQP01000353
[ODQP] human metagenome; G_DNA_Supragingival plaque
529
604
+
Lys
TTT
[ENA]
¢þ
>WENV180909737
ODQP01001520
[ODQP] human metagenome; G_DNA_Supragingival plaque
545
470
-
Asn
GTT
[ENA]
¢þ
>WENV180909704
ODQP01000059
[ODQP] human metagenome; G_DNA_Supragingival plaque
548
618
+
Val
TAC
[ENA]
¢þ
>WENV180909721
ODQP01000587
[ODQP] human metagenome; G_DNA_Supragingival plaque
555
481
-
Lys
TTT
[ENA]
¢þ
>WENV180909719
ODQP01000538
[ODQP] human metagenome; G_DNA_Supragingival plaque
632
715
+
Leu
TAG
[ENA]
¢þ
>WENV180909718
ODQP01000494
[ODQP] human metagenome; G_DNA_Supragingival plaque
709
782
+
Ala
GGC
[ENA]
¢þ
>WENV180909720
ODQP01000553
[ODQP] human metagenome; G_DNA_Supragingival plaque
815
890
+
His
GTG
[ENA]
¢þ
>WENV180909709
ODQP01000151
[ODQP] human metagenome; G_DNA_Supragingival plaque
941
1016
+
Arg
TCT
[ENA]
¢þ
>WENV180909717
ODQP01000482
[ODQP] human metagenome; G_DNA_Supragingival plaque
1069
996
-
Arg
CCT
[ENA]
¢þ
>WENV180909715
ODQP01000353
[ODQP] human metagenome; G_DNA_Supragingival plaque
1209
1136
-
Thr
TGT
[ENA]
¢þ
>WENV180909713
ODQP01000318
[ODQP] human metagenome; G_DNA_Supragingival plaque
1263
1188
-
Ala
TGC
[ENA]
¢þ
>WENV180909710
ODQP01000219
[ODQP] human metagenome; G_DNA_Supragingival plaque
1359
1284
-
Thr
CGT
[ENA]
¢þ
>WENV180909705
ODQP01000061
[ODQP] human metagenome; G_DNA_Supragingival plaque
1607
1680
+
His
GTG
[ENA]
¢þ
>WENV180909702
ODQP01000038
[ODQP] human metagenome; G_DNA_Supragingival plaque
1632
1716
+
Leu
TAG
[ENA]
¢þ
>WENV180909708
ODQP01000143
[ODQP] human metagenome; G_DNA_Supragingival plaque
1643
1570
-
Gly
TCC
[ENA]
¢þ
>WENV180909707
ODQP01000063
[ODQP] human metagenome; G_DNA_Supragingival plaque
1966
2053
+
Ser
CGA
[ENA]
¢þ
>WENV180909703
ODQP01000038
[ODQP] human metagenome; G_DNA_Supragingival plaque
2093
2168
+
Arg
TCG
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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