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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA gene List
[ODRJ] human metagenome; G_DNA_Buccal mucosa
HIT:
62 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV180910991
ODRJ01006125
[ODRJ] human metagenome; G_DNA_Buccal mucosa
31
104
+
Val
CAC
[ENA]
¢þ
>WENV180911001
ODRJ01009834
[ODRJ] human metagenome; G_DNA_Buccal mucosa
33
106
+
Gln
TTG
[ENA]
¢þ
>WENV180910983
ODRJ01002415
[ODRJ] human metagenome; G_DNA_Buccal mucosa
36
108
+
Val
GAC
[ENA]
¢þ
>WENV180910993
ODRJ01006723
[ODRJ] human metagenome; G_DNA_Buccal mucosa
43
117
+
Glu
TTC
[ENA]
¢þ
>WENV180910968
ODRJ01001199
[ODRJ] human metagenome; G_DNA_Buccal mucosa
75
157
+
Tyr
GTA
[ENA]
¢þ
>WENV180910978
ODRJ01001582
[ODRJ] human metagenome; G_DNA_Buccal mucosa
81
7
-
Val
TAC
[ENA]
¢þ
>WENV180910998
ODRJ01008646
[ODRJ] human metagenome; G_DNA_Buccal mucosa
92
167
+
Thr
CGT
[ENA]
¢þ
>WENV180911000
ODRJ01009597
[ODRJ] human metagenome; G_DNA_Buccal mucosa
101
25
-
fMet
CAT
[ENA]
¢þ
>WENV180910986
ODRJ01002634
[ODRJ] human metagenome; G_DNA_Buccal mucosa
101
28
-
Arg
ACG
[ENA]
¢þ
>WENV180910997
ODRJ01008183
[ODRJ] human metagenome; G_DNA_Buccal mucosa
110
34
-
Arg
ACG
[ENA]
¢þ
>WENV180911002
ODRJ01009834
[ODRJ] human metagenome; G_DNA_Buccal mucosa
118
190
+
Cys
GCA
[ENA]
¢þ
>WENV180910964
ODRJ01000726
[ODRJ] human metagenome; G_DNA_Buccal mucosa
120
45
-
Glu
TTC
[ENA]
¢þ
>WENV180910994
ODRJ01006723
[ODRJ] human metagenome; G_DNA_Buccal mucosa
122
197
+
Val
TAC
[ENA]
¢þ
>WENV180910973
ODRJ01001346
[ODRJ] human metagenome; G_DNA_Buccal mucosa
129
58
-
Cys
GCA
[ENA]
¢þ
>WENV180910941
ODRJ01000023
[ODRJ] human metagenome; G_DNA_Buccal mucosa
135
207
+
Asn
GTT
[ENA]
¢þ
>WENV180910995
ODRJ01007775
[ODRJ] human metagenome; G_DNA_Buccal mucosa
138
64
-
Pro
GGG
[ENA]
¢þ
>WENV180910999
ODRJ01008728
[ODRJ] human metagenome; G_DNA_Buccal mucosa
146
73
-
Gly
TCC
[ENA]
¢þ
>WENV180910980
ODRJ01001721
[ODRJ] human metagenome; G_DNA_Buccal mucosa
173
247
+
Ala
TGC
[ENA]
¢þ
>WENV180910985
ODRJ01002602
[ODRJ] human metagenome; G_DNA_Buccal mucosa
178
253
+
Thr
TGT
[ENA]
¢þ
>WENV180910992
ODRJ01006503
[ODRJ] human metagenome; G_DNA_Buccal mucosa
180
88
-
Ser
TGA
[ENA]
¢þ
>WENV180910956
ODRJ01000429
[ODRJ] human metagenome; G_DNA_Buccal mucosa
196
122
-
Ala
TGC
[ENA]
¢þ
>WENV180910996
ODRJ01008183
[ODRJ] human metagenome; G_DNA_Buccal mucosa
211
123
-
Leu
TAA
[ENA]
¢þ
>WENV180910966
ODRJ01001032
[ODRJ] human metagenome; G_DNA_Buccal mucosa
217
290
+
Trp
CCA
[ENA]
¢þ
>WENV180910990
ODRJ01003947
[ODRJ] human metagenome; G_DNA_Buccal mucosa
226
142
-
Leu
TAG
[ENA]
¢þ
>WENV180910972
ODRJ01001346
[ODRJ] human metagenome; G_DNA_Buccal mucosa
230
157
-
Gly
GCC
[ENA]
¢þ
>WENV180910988
ODRJ01003389
[ODRJ] human metagenome; G_DNA_Buccal mucosa
231
303
+
Thr
GGT
[ENA]
¢þ
>WENV180910989
ODRJ01003907
[ODRJ] human metagenome; G_DNA_Buccal mucosa
234
310
+
Ile2
CAT
[ENA]
¢þ
>WENV180910975
ODRJ01001403
[ODRJ] human metagenome; G_DNA_Buccal mucosa
244
169
-
Glu
CTC
[ENA]
¢þ
>WENV180910976
ODRJ01001408
[ODRJ] human metagenome; G_DNA_Buccal mucosa
263
346
+
Leu
CAG
[ENA]
¢þ
>WENV180910963
ODRJ01000726
[ODRJ] human metagenome; G_DNA_Buccal mucosa
274
199
-
Ala
GGC
[ENA]
¢þ
>WENV180910984
ODRJ01002487
[ODRJ] human metagenome; G_DNA_Buccal mucosa
279
364
+
Ser
TGA
[ENA]
¢þ
>WENV180910987
ODRJ01002917
[ODRJ] human metagenome; G_DNA_Buccal mucosa
296
370
+
Lys
CTT
[ENA]
¢þ
>WENV180910962
ODRJ01000693
[ODRJ] human metagenome; G_DNA_Buccal mucosa
315
239
-
Pro
CGG
[ENA]
¢þ
>WENV180910982
ODRJ01001853
[ODRJ] human metagenome; G_DNA_Buccal mucosa
334
249
-
Ser
TGA
[ENA]
¢þ
>WENV180910969
ODRJ01001199
[ODRJ] human metagenome; G_DNA_Buccal mucosa
358
431
+
Thr
GGT
[ENA]
¢þ
>WENV180910971
ODRJ01001268
[ODRJ] human metagenome; G_DNA_Buccal mucosa
366
441
+
Trp
CCA
[ENA]
¢þ
>WENV180910946
ODRJ01000061
[ODRJ] human metagenome; G_DNA_Buccal mucosa
381
311
-
Met
CAT
[ENA]
¢þ
>WENV180910951
ODRJ01000316
[ODRJ] human metagenome; G_DNA_Buccal mucosa
384
458
+
Asp
GTC
[ENA]
¢þ
>WENV180910981
ODRJ01001853
[ODRJ] human metagenome; G_DNA_Buccal mucosa
440
358
-
Tyr
GTA
[ENA]
¢þ
>WENV180910974
ODRJ01001403
[ODRJ] human metagenome; G_DNA_Buccal mucosa
452
380
-
Gln
CTG
[ENA]
¢þ
>WENV180910965
ODRJ01001011
[ODRJ] human metagenome; G_DNA_Buccal mucosa
469
393
-
fMet
CAT
[ENA]
¢þ
>WENV180910967
ODRJ01001097
[ODRJ] human metagenome; G_DNA_Buccal mucosa
484
557
+
Asn
GTT
[ENA]
¢þ
>WENV180910979
ODRJ01001663
[ODRJ] human metagenome; G_DNA_Buccal mucosa
492
407
-
Ser
GGA
[ENA]
¢þ
>WENV180910970
ODRJ01001199
[ODRJ] human metagenome; G_DNA_Buccal mucosa
496
570
+
Met
CAT
[ENA]
¢þ
>WENV180910952
ODRJ01000316
[ODRJ] human metagenome; G_DNA_Buccal mucosa
519
594
+
Phe
GAA
[ENA]
¢þ
>WENV180910954
ODRJ01000353
[ODRJ] human metagenome; G_DNA_Buccal mucosa
529
604
+
Lys
TTT
[ENA]
¢þ
>WENV180910977
ODRJ01001520
[ODRJ] human metagenome; G_DNA_Buccal mucosa
545
470
-
Asn
GTT
[ENA]
¢þ
>WENV180910944
ODRJ01000059
[ODRJ] human metagenome; G_DNA_Buccal mucosa
548
618
+
Val
TAC
[ENA]
¢þ
>WENV180910961
ODRJ01000587
[ODRJ] human metagenome; G_DNA_Buccal mucosa
555
481
-
Lys
TTT
[ENA]
¢þ
>WENV180910959
ODRJ01000538
[ODRJ] human metagenome; G_DNA_Buccal mucosa
632
715
+
Leu
TAG
[ENA]
¢þ
>WENV180910958
ODRJ01000494
[ODRJ] human metagenome; G_DNA_Buccal mucosa
709
782
+
Ala
GGC
[ENA]
¢þ
>WENV180910960
ODRJ01000553
[ODRJ] human metagenome; G_DNA_Buccal mucosa
815
890
+
His
GTG
[ENA]
¢þ
>WENV180910949
ODRJ01000151
[ODRJ] human metagenome; G_DNA_Buccal mucosa
941
1016
+
Arg
TCT
[ENA]
¢þ
>WENV180910957
ODRJ01000482
[ODRJ] human metagenome; G_DNA_Buccal mucosa
1069
996
-
Arg
CCT
[ENA]
¢þ
>WENV180910955
ODRJ01000353
[ODRJ] human metagenome; G_DNA_Buccal mucosa
1209
1136
-
Thr
TGT
[ENA]
¢þ
>WENV180910953
ODRJ01000318
[ODRJ] human metagenome; G_DNA_Buccal mucosa
1263
1188
-
Ala
TGC
[ENA]
¢þ
>WENV180910950
ODRJ01000219
[ODRJ] human metagenome; G_DNA_Buccal mucosa
1359
1284
-
Thr
CGT
[ENA]
¢þ
>WENV180910945
ODRJ01000061
[ODRJ] human metagenome; G_DNA_Buccal mucosa
1607
1680
+
His
GTG
[ENA]
¢þ
>WENV180910942
ODRJ01000038
[ODRJ] human metagenome; G_DNA_Buccal mucosa
1632
1716
+
Leu
TAG
[ENA]
¢þ
>WENV180910948
ODRJ01000143
[ODRJ] human metagenome; G_DNA_Buccal mucosa
1643
1570
-
Gly
TCC
[ENA]
¢þ
>WENV180910947
ODRJ01000063
[ODRJ] human metagenome; G_DNA_Buccal mucosa
1966
2053
+
Ser
CGA
[ENA]
¢þ
>WENV180910943
ODRJ01000038
[ODRJ] human metagenome; G_DNA_Buccal mucosa
2093
2168
+
Arg
TCG
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
BACK