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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
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HOW TO USE
tRNA gene List
[ODRY] human metagenome; G_DNA_Tongue dorsum
HIT:
62 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV180911921
ODRY01006125
[ODRY] human metagenome; G_DNA_Tongue dorsum
31
104
+
Val
CAC
[ENA]
¢þ
>WENV180911931
ODRY01009834
[ODRY] human metagenome; G_DNA_Tongue dorsum
33
106
+
Gln
TTG
[ENA]
¢þ
>WENV180911913
ODRY01002415
[ODRY] human metagenome; G_DNA_Tongue dorsum
36
108
+
Val
GAC
[ENA]
¢þ
>WENV180911923
ODRY01006723
[ODRY] human metagenome; G_DNA_Tongue dorsum
43
117
+
Glu
TTC
[ENA]
¢þ
>WENV180911898
ODRY01001199
[ODRY] human metagenome; G_DNA_Tongue dorsum
75
157
+
Tyr
GTA
[ENA]
¢þ
>WENV180911908
ODRY01001582
[ODRY] human metagenome; G_DNA_Tongue dorsum
81
7
-
Val
TAC
[ENA]
¢þ
>WENV180911928
ODRY01008646
[ODRY] human metagenome; G_DNA_Tongue dorsum
92
167
+
Thr
CGT
[ENA]
¢þ
>WENV180911930
ODRY01009597
[ODRY] human metagenome; G_DNA_Tongue dorsum
101
25
-
fMet
CAT
[ENA]
¢þ
>WENV180911916
ODRY01002634
[ODRY] human metagenome; G_DNA_Tongue dorsum
101
28
-
Arg
ACG
[ENA]
¢þ
>WENV180911927
ODRY01008183
[ODRY] human metagenome; G_DNA_Tongue dorsum
110
34
-
Arg
ACG
[ENA]
¢þ
>WENV180911932
ODRY01009834
[ODRY] human metagenome; G_DNA_Tongue dorsum
118
190
+
Cys
GCA
[ENA]
¢þ
>WENV180911894
ODRY01000726
[ODRY] human metagenome; G_DNA_Tongue dorsum
120
45
-
Glu
TTC
[ENA]
¢þ
>WENV180911924
ODRY01006723
[ODRY] human metagenome; G_DNA_Tongue dorsum
122
197
+
Val
TAC
[ENA]
¢þ
>WENV180911903
ODRY01001346
[ODRY] human metagenome; G_DNA_Tongue dorsum
129
58
-
Cys
GCA
[ENA]
¢þ
>WENV180911871
ODRY01000023
[ODRY] human metagenome; G_DNA_Tongue dorsum
135
207
+
Asn
GTT
[ENA]
¢þ
>WENV180911925
ODRY01007775
[ODRY] human metagenome; G_DNA_Tongue dorsum
138
64
-
Pro
GGG
[ENA]
¢þ
>WENV180911929
ODRY01008728
[ODRY] human metagenome; G_DNA_Tongue dorsum
146
73
-
Gly
TCC
[ENA]
¢þ
>WENV180911910
ODRY01001721
[ODRY] human metagenome; G_DNA_Tongue dorsum
173
247
+
Ala
TGC
[ENA]
¢þ
>WENV180911915
ODRY01002602
[ODRY] human metagenome; G_DNA_Tongue dorsum
178
253
+
Thr
TGT
[ENA]
¢þ
>WENV180911922
ODRY01006503
[ODRY] human metagenome; G_DNA_Tongue dorsum
180
88
-
Ser
TGA
[ENA]
¢þ
>WENV180911886
ODRY01000429
[ODRY] human metagenome; G_DNA_Tongue dorsum
196
122
-
Ala
TGC
[ENA]
¢þ
>WENV180911926
ODRY01008183
[ODRY] human metagenome; G_DNA_Tongue dorsum
211
123
-
Leu
TAA
[ENA]
¢þ
>WENV180911896
ODRY01001032
[ODRY] human metagenome; G_DNA_Tongue dorsum
217
290
+
Trp
CCA
[ENA]
¢þ
>WENV180911920
ODRY01003947
[ODRY] human metagenome; G_DNA_Tongue dorsum
226
142
-
Leu
TAG
[ENA]
¢þ
>WENV180911902
ODRY01001346
[ODRY] human metagenome; G_DNA_Tongue dorsum
230
157
-
Gly
GCC
[ENA]
¢þ
>WENV180911918
ODRY01003389
[ODRY] human metagenome; G_DNA_Tongue dorsum
231
303
+
Thr
GGT
[ENA]
¢þ
>WENV180911919
ODRY01003907
[ODRY] human metagenome; G_DNA_Tongue dorsum
234
310
+
Ile2
CAT
[ENA]
¢þ
>WENV180911905
ODRY01001403
[ODRY] human metagenome; G_DNA_Tongue dorsum
244
169
-
Glu
CTC
[ENA]
¢þ
>WENV180911906
ODRY01001408
[ODRY] human metagenome; G_DNA_Tongue dorsum
263
346
+
Leu
CAG
[ENA]
¢þ
>WENV180911893
ODRY01000726
[ODRY] human metagenome; G_DNA_Tongue dorsum
274
199
-
Ala
GGC
[ENA]
¢þ
>WENV180911914
ODRY01002487
[ODRY] human metagenome; G_DNA_Tongue dorsum
279
364
+
Ser
TGA
[ENA]
¢þ
>WENV180911917
ODRY01002917
[ODRY] human metagenome; G_DNA_Tongue dorsum
296
370
+
Lys
CTT
[ENA]
¢þ
>WENV180911892
ODRY01000693
[ODRY] human metagenome; G_DNA_Tongue dorsum
315
239
-
Pro
CGG
[ENA]
¢þ
>WENV180911912
ODRY01001853
[ODRY] human metagenome; G_DNA_Tongue dorsum
334
249
-
Ser
TGA
[ENA]
¢þ
>WENV180911899
ODRY01001199
[ODRY] human metagenome; G_DNA_Tongue dorsum
358
431
+
Thr
GGT
[ENA]
¢þ
>WENV180911901
ODRY01001268
[ODRY] human metagenome; G_DNA_Tongue dorsum
366
441
+
Trp
CCA
[ENA]
¢þ
>WENV180911876
ODRY01000061
[ODRY] human metagenome; G_DNA_Tongue dorsum
381
311
-
Met
CAT
[ENA]
¢þ
>WENV180911881
ODRY01000316
[ODRY] human metagenome; G_DNA_Tongue dorsum
384
458
+
Asp
GTC
[ENA]
¢þ
>WENV180911911
ODRY01001853
[ODRY] human metagenome; G_DNA_Tongue dorsum
440
358
-
Tyr
GTA
[ENA]
¢þ
>WENV180911904
ODRY01001403
[ODRY] human metagenome; G_DNA_Tongue dorsum
452
380
-
Gln
CTG
[ENA]
¢þ
>WENV180911895
ODRY01001011
[ODRY] human metagenome; G_DNA_Tongue dorsum
469
393
-
fMet
CAT
[ENA]
¢þ
>WENV180911897
ODRY01001097
[ODRY] human metagenome; G_DNA_Tongue dorsum
484
557
+
Asn
GTT
[ENA]
¢þ
>WENV180911909
ODRY01001663
[ODRY] human metagenome; G_DNA_Tongue dorsum
492
407
-
Ser
GGA
[ENA]
¢þ
>WENV180911900
ODRY01001199
[ODRY] human metagenome; G_DNA_Tongue dorsum
496
570
+
Met
CAT
[ENA]
¢þ
>WENV180911882
ODRY01000316
[ODRY] human metagenome; G_DNA_Tongue dorsum
519
594
+
Phe
GAA
[ENA]
¢þ
>WENV180911884
ODRY01000353
[ODRY] human metagenome; G_DNA_Tongue dorsum
529
604
+
Lys
TTT
[ENA]
¢þ
>WENV180911907
ODRY01001520
[ODRY] human metagenome; G_DNA_Tongue dorsum
545
470
-
Asn
GTT
[ENA]
¢þ
>WENV180911874
ODRY01000059
[ODRY] human metagenome; G_DNA_Tongue dorsum
548
618
+
Val
TAC
[ENA]
¢þ
>WENV180911891
ODRY01000587
[ODRY] human metagenome; G_DNA_Tongue dorsum
555
481
-
Lys
TTT
[ENA]
¢þ
>WENV180911889
ODRY01000538
[ODRY] human metagenome; G_DNA_Tongue dorsum
632
715
+
Leu
TAG
[ENA]
¢þ
>WENV180911888
ODRY01000494
[ODRY] human metagenome; G_DNA_Tongue dorsum
709
782
+
Ala
GGC
[ENA]
¢þ
>WENV180911890
ODRY01000553
[ODRY] human metagenome; G_DNA_Tongue dorsum
815
890
+
His
GTG
[ENA]
¢þ
>WENV180911879
ODRY01000151
[ODRY] human metagenome; G_DNA_Tongue dorsum
941
1016
+
Arg
TCT
[ENA]
¢þ
>WENV180911887
ODRY01000482
[ODRY] human metagenome; G_DNA_Tongue dorsum
1069
996
-
Arg
CCT
[ENA]
¢þ
>WENV180911885
ODRY01000353
[ODRY] human metagenome; G_DNA_Tongue dorsum
1209
1136
-
Thr
TGT
[ENA]
¢þ
>WENV180911883
ODRY01000318
[ODRY] human metagenome; G_DNA_Tongue dorsum
1263
1188
-
Ala
TGC
[ENA]
¢þ
>WENV180911880
ODRY01000219
[ODRY] human metagenome; G_DNA_Tongue dorsum
1359
1284
-
Thr
CGT
[ENA]
¢þ
>WENV180911875
ODRY01000061
[ODRY] human metagenome; G_DNA_Tongue dorsum
1607
1680
+
His
GTG
[ENA]
¢þ
>WENV180911872
ODRY01000038
[ODRY] human metagenome; G_DNA_Tongue dorsum
1632
1716
+
Leu
TAG
[ENA]
¢þ
>WENV180911878
ODRY01000143
[ODRY] human metagenome; G_DNA_Tongue dorsum
1643
1570
-
Gly
TCC
[ENA]
¢þ
>WENV180911877
ODRY01000063
[ODRY] human metagenome; G_DNA_Tongue dorsum
1966
2053
+
Ser
CGA
[ENA]
¢þ
>WENV180911873
ODRY01000038
[ODRY] human metagenome; G_DNA_Tongue dorsum
2093
2168
+
Arg
TCG
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
BACK