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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA gene List
[ODSC] human metagenome; G_DNA_R_Retroauricular crease
HIT:
62 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV180912169
ODSC01006125
[ODSC] human metagenome; G_DNA_R_Retroauricular crease
31
104
+
Val
CAC
[ENA]
¢þ
>WENV180912179
ODSC01009834
[ODSC] human metagenome; G_DNA_R_Retroauricular crease
33
106
+
Gln
TTG
[ENA]
¢þ
>WENV180912161
ODSC01002415
[ODSC] human metagenome; G_DNA_R_Retroauricular crease
36
108
+
Val
GAC
[ENA]
¢þ
>WENV180912171
ODSC01006723
[ODSC] human metagenome; G_DNA_R_Retroauricular crease
43
117
+
Glu
TTC
[ENA]
¢þ
>WENV180912146
ODSC01001199
[ODSC] human metagenome; G_DNA_R_Retroauricular crease
75
157
+
Tyr
GTA
[ENA]
¢þ
>WENV180912156
ODSC01001582
[ODSC] human metagenome; G_DNA_R_Retroauricular crease
81
7
-
Val
TAC
[ENA]
¢þ
>WENV180912176
ODSC01008646
[ODSC] human metagenome; G_DNA_R_Retroauricular crease
92
167
+
Thr
CGT
[ENA]
¢þ
>WENV180912178
ODSC01009597
[ODSC] human metagenome; G_DNA_R_Retroauricular crease
101
25
-
fMet
CAT
[ENA]
¢þ
>WENV180912164
ODSC01002634
[ODSC] human metagenome; G_DNA_R_Retroauricular crease
101
28
-
Arg
ACG
[ENA]
¢þ
>WENV180912175
ODSC01008183
[ODSC] human metagenome; G_DNA_R_Retroauricular crease
110
34
-
Arg
ACG
[ENA]
¢þ
>WENV180912180
ODSC01009834
[ODSC] human metagenome; G_DNA_R_Retroauricular crease
118
190
+
Cys
GCA
[ENA]
¢þ
>WENV180912142
ODSC01000726
[ODSC] human metagenome; G_DNA_R_Retroauricular crease
120
45
-
Glu
TTC
[ENA]
¢þ
>WENV180912172
ODSC01006723
[ODSC] human metagenome; G_DNA_R_Retroauricular crease
122
197
+
Val
TAC
[ENA]
¢þ
>WENV180912151
ODSC01001346
[ODSC] human metagenome; G_DNA_R_Retroauricular crease
129
58
-
Cys
GCA
[ENA]
¢þ
>WENV180912119
ODSC01000023
[ODSC] human metagenome; G_DNA_R_Retroauricular crease
135
207
+
Asn
GTT
[ENA]
¢þ
>WENV180912173
ODSC01007775
[ODSC] human metagenome; G_DNA_R_Retroauricular crease
138
64
-
Pro
GGG
[ENA]
¢þ
>WENV180912177
ODSC01008728
[ODSC] human metagenome; G_DNA_R_Retroauricular crease
146
73
-
Gly
TCC
[ENA]
¢þ
>WENV180912158
ODSC01001721
[ODSC] human metagenome; G_DNA_R_Retroauricular crease
173
247
+
Ala
TGC
[ENA]
¢þ
>WENV180912163
ODSC01002602
[ODSC] human metagenome; G_DNA_R_Retroauricular crease
178
253
+
Thr
TGT
[ENA]
¢þ
>WENV180912170
ODSC01006503
[ODSC] human metagenome; G_DNA_R_Retroauricular crease
180
88
-
Ser
TGA
[ENA]
¢þ
>WENV180912134
ODSC01000429
[ODSC] human metagenome; G_DNA_R_Retroauricular crease
196
122
-
Ala
TGC
[ENA]
¢þ
>WENV180912174
ODSC01008183
[ODSC] human metagenome; G_DNA_R_Retroauricular crease
211
123
-
Leu
TAA
[ENA]
¢þ
>WENV180912144
ODSC01001032
[ODSC] human metagenome; G_DNA_R_Retroauricular crease
217
290
+
Trp
CCA
[ENA]
¢þ
>WENV180912168
ODSC01003947
[ODSC] human metagenome; G_DNA_R_Retroauricular crease
226
142
-
Leu
TAG
[ENA]
¢þ
>WENV180912150
ODSC01001346
[ODSC] human metagenome; G_DNA_R_Retroauricular crease
230
157
-
Gly
GCC
[ENA]
¢þ
>WENV180912166
ODSC01003389
[ODSC] human metagenome; G_DNA_R_Retroauricular crease
231
303
+
Thr
GGT
[ENA]
¢þ
>WENV180912167
ODSC01003907
[ODSC] human metagenome; G_DNA_R_Retroauricular crease
234
310
+
Ile2
CAT
[ENA]
¢þ
>WENV180912153
ODSC01001403
[ODSC] human metagenome; G_DNA_R_Retroauricular crease
244
169
-
Glu
CTC
[ENA]
¢þ
>WENV180912154
ODSC01001408
[ODSC] human metagenome; G_DNA_R_Retroauricular crease
263
346
+
Leu
CAG
[ENA]
¢þ
>WENV180912141
ODSC01000726
[ODSC] human metagenome; G_DNA_R_Retroauricular crease
274
199
-
Ala
GGC
[ENA]
¢þ
>WENV180912162
ODSC01002487
[ODSC] human metagenome; G_DNA_R_Retroauricular crease
279
364
+
Ser
TGA
[ENA]
¢þ
>WENV180912165
ODSC01002917
[ODSC] human metagenome; G_DNA_R_Retroauricular crease
296
370
+
Lys
CTT
[ENA]
¢þ
>WENV180912140
ODSC01000693
[ODSC] human metagenome; G_DNA_R_Retroauricular crease
315
239
-
Pro
CGG
[ENA]
¢þ
>WENV180912160
ODSC01001853
[ODSC] human metagenome; G_DNA_R_Retroauricular crease
334
249
-
Ser
TGA
[ENA]
¢þ
>WENV180912147
ODSC01001199
[ODSC] human metagenome; G_DNA_R_Retroauricular crease
358
431
+
Thr
GGT
[ENA]
¢þ
>WENV180912149
ODSC01001268
[ODSC] human metagenome; G_DNA_R_Retroauricular crease
366
441
+
Trp
CCA
[ENA]
¢þ
>WENV180912124
ODSC01000061
[ODSC] human metagenome; G_DNA_R_Retroauricular crease
381
311
-
Met
CAT
[ENA]
¢þ
>WENV180912129
ODSC01000316
[ODSC] human metagenome; G_DNA_R_Retroauricular crease
384
458
+
Asp
GTC
[ENA]
¢þ
>WENV180912159
ODSC01001853
[ODSC] human metagenome; G_DNA_R_Retroauricular crease
440
358
-
Tyr
GTA
[ENA]
¢þ
>WENV180912152
ODSC01001403
[ODSC] human metagenome; G_DNA_R_Retroauricular crease
452
380
-
Gln
CTG
[ENA]
¢þ
>WENV180912143
ODSC01001011
[ODSC] human metagenome; G_DNA_R_Retroauricular crease
469
393
-
fMet
CAT
[ENA]
¢þ
>WENV180912145
ODSC01001097
[ODSC] human metagenome; G_DNA_R_Retroauricular crease
484
557
+
Asn
GTT
[ENA]
¢þ
>WENV180912157
ODSC01001663
[ODSC] human metagenome; G_DNA_R_Retroauricular crease
492
407
-
Ser
GGA
[ENA]
¢þ
>WENV180912148
ODSC01001199
[ODSC] human metagenome; G_DNA_R_Retroauricular crease
496
570
+
Met
CAT
[ENA]
¢þ
>WENV180912130
ODSC01000316
[ODSC] human metagenome; G_DNA_R_Retroauricular crease
519
594
+
Phe
GAA
[ENA]
¢þ
>WENV180912132
ODSC01000353
[ODSC] human metagenome; G_DNA_R_Retroauricular crease
529
604
+
Lys
TTT
[ENA]
¢þ
>WENV180912155
ODSC01001520
[ODSC] human metagenome; G_DNA_R_Retroauricular crease
545
470
-
Asn
GTT
[ENA]
¢þ
>WENV180912122
ODSC01000059
[ODSC] human metagenome; G_DNA_R_Retroauricular crease
548
618
+
Val
TAC
[ENA]
¢þ
>WENV180912139
ODSC01000587
[ODSC] human metagenome; G_DNA_R_Retroauricular crease
555
481
-
Lys
TTT
[ENA]
¢þ
>WENV180912137
ODSC01000538
[ODSC] human metagenome; G_DNA_R_Retroauricular crease
632
715
+
Leu
TAG
[ENA]
¢þ
>WENV180912136
ODSC01000494
[ODSC] human metagenome; G_DNA_R_Retroauricular crease
709
782
+
Ala
GGC
[ENA]
¢þ
>WENV180912138
ODSC01000553
[ODSC] human metagenome; G_DNA_R_Retroauricular crease
815
890
+
His
GTG
[ENA]
¢þ
>WENV180912127
ODSC01000151
[ODSC] human metagenome; G_DNA_R_Retroauricular crease
941
1016
+
Arg
TCT
[ENA]
¢þ
>WENV180912135
ODSC01000482
[ODSC] human metagenome; G_DNA_R_Retroauricular crease
1069
996
-
Arg
CCT
[ENA]
¢þ
>WENV180912133
ODSC01000353
[ODSC] human metagenome; G_DNA_R_Retroauricular crease
1209
1136
-
Thr
TGT
[ENA]
¢þ
>WENV180912131
ODSC01000318
[ODSC] human metagenome; G_DNA_R_Retroauricular crease
1263
1188
-
Ala
TGC
[ENA]
¢þ
>WENV180912128
ODSC01000219
[ODSC] human metagenome; G_DNA_R_Retroauricular crease
1359
1284
-
Thr
CGT
[ENA]
¢þ
>WENV180912123
ODSC01000061
[ODSC] human metagenome; G_DNA_R_Retroauricular crease
1607
1680
+
His
GTG
[ENA]
¢þ
>WENV180912120
ODSC01000038
[ODSC] human metagenome; G_DNA_R_Retroauricular crease
1632
1716
+
Leu
TAG
[ENA]
¢þ
>WENV180912126
ODSC01000143
[ODSC] human metagenome; G_DNA_R_Retroauricular crease
1643
1570
-
Gly
TCC
[ENA]
¢þ
>WENV180912125
ODSC01000063
[ODSC] human metagenome; G_DNA_R_Retroauricular crease
1966
2053
+
Ser
CGA
[ENA]
¢þ
>WENV180912121
ODSC01000038
[ODSC] human metagenome; G_DNA_R_Retroauricular crease
2093
2168
+
Arg
TCG
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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