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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
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|
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HOW TO USE
tRNA gene List
[ODXG] human metagenome; G_DNA_Anterior nares
HIT:
62 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV181030348
ODXG01000917
[ODXG] human metagenome; G_DNA_Anterior nares
12
100
+
Ser
GGA
[ENA]
¢þ
>WENV181030354
ODXG01003066
[ODXG] human metagenome; G_DNA_Anterior nares
19
92
+
Arg
CCT
[ENA]
¢þ
>WENV181030355
ODXG01003339
[ODXG] human metagenome; G_DNA_Anterior nares
21
115
+
SeC
TCA
[ENA]
¢þ
>WENV181030370
ODXG01008583
[ODXG] human metagenome; G_DNA_Anterior nares
25
101
+
Ile
GAT
[ENA]
¢þ
>WENV181030366
ODXG01006728
[ODXG] human metagenome; G_DNA_Anterior nares
45
117
+
Gln
TTG
[ENA]
¢þ
>WENV181030353
ODXG01003043
[ODXG] human metagenome; G_DNA_Anterior nares
45
118
+
Gly
CCC
[ENA]
¢þ
>WENV181030378
ODXG01011575
[ODXG] human metagenome; G_DNA_Anterior nares
77
149
+
Met
CAT
[ENA]
¢þ
>WENV181030369
ODXG01007420
[ODXG] human metagenome; G_DNA_Anterior nares
82
156
+
Asn
GTT
[ENA]
¢þ
>WENV181030376
ODXG01010711
[ODXG] human metagenome; G_DNA_Anterior nares
83
156
+
Phe
GAA
[ENA]
¢þ
>WENV181030375
ODXG01010356
[ODXG] human metagenome; G_DNA_Anterior nares
87
163
+
Pro
CGG
[ENA]
¢þ
>WENV181030342
ODXG01000763
[ODXG] human metagenome; G_DNA_Anterior nares
94
164
+
Gly
TCC
[ENA]
¢þ
>WENV181030336
ODXG01000483
[ODXG] human metagenome; G_DNA_Anterior nares
105
30
-
Glu
CTC
[ENA]
¢þ
>WENV181030364
ODXG01005784
[ODXG] human metagenome; G_DNA_Anterior nares
110
37
-
Thr
GGT
[ENA]
¢þ
>WENV181030371
ODXG01008583
[ODXG] human metagenome; G_DNA_Anterior nares
111
184
+
Ala
TGC
[ENA]
¢þ
>WENV181030365
ODXG01006447
[ODXG] human metagenome; G_DNA_Anterior nares
117
191
+
Val
TAC
[ENA]
¢þ
>WENV181030351
ODXG01002527
[ODXG] human metagenome; G_DNA_Anterior nares
123
34
-
Ser
GCT
[ENA]
¢þ
>WENV181030330
ODXG01000040
[ODXG] human metagenome; G_DNA_Anterior nares
135
207
+
Gly
TCC
[ENA]
¢þ
>WENV181030339
ODXG01000577
[ODXG] human metagenome; G_DNA_Anterior nares
140
67
-
Trp
CCA
[ENA]
¢þ
>WENV181030329
ODXG01000039
[ODXG] human metagenome; G_DNA_Anterior nares
141
57
-
Leu
CAA
[ENA]
¢þ
>WENV181030350
ODXG01001877
[ODXG] human metagenome; G_DNA_Anterior nares
141
213
+
Gln
TTG
[ENA]
¢þ
>WENV181030358
ODXG01003473
[ODXG] human metagenome; G_DNA_Anterior nares
143
69
-
Arg
TCG
[ENA]
¢þ
>WENV181030361
ODXG01004856
[ODXG] human metagenome; G_DNA_Anterior nares
144
219
+
Thr
CGT
[ENA]
¢þ
>WENV181030334
ODXG01000286
[ODXG] human metagenome; G_DNA_Anterior nares
146
73
-
Arg
CCT
[ENA]
¢þ
>WENV181030374
ODXG01010144
[ODXG] human metagenome; G_DNA_Anterior nares
149
73
-
Ile
GAT
[ENA]
¢þ
>WENV181030332
ODXG01000166
[ODXG] human metagenome; G_DNA_Anterior nares
156
230
+
Met
CAT
[ENA]
¢þ
>WENV181030372
ODXG01009371
[ODXG] human metagenome; G_DNA_Anterior nares
167
79
-
Ser
GCT
[ENA]
¢þ
>WENV181030373
ODXG01009554
[ODXG] human metagenome; G_DNA_Anterior nares
172
97
-
Thr
CGT
[ENA]
¢þ
>WENV181030367
ODXG01007007
[ODXG] human metagenome; G_DNA_Anterior nares
173
101
-
Val
CAC
[ENA]
¢þ
>WENV181030343
ODXG01000763
[ODXG] human metagenome; G_DNA_Anterior nares
174
249
+
Ile
GAT
[ENA]
¢þ
>WENV181030363
ODXG01005007
[ODXG] human metagenome; G_DNA_Anterior nares
189
113
-
fMet
CAT
[ENA]
¢þ
>WENV181030340
ODXG01000606
[ODXG] human metagenome; G_DNA_Anterior nares
190
117
-
Lys
CTT
[ENA]
¢þ
>WENV181030368
ODXG01007197
[ODXG] human metagenome; G_DNA_Anterior nares
204
277
+
Arg
TCT
[ENA]
¢þ
>WENV181030331
ODXG01000154
[ODXG] human metagenome; G_DNA_Anterior nares
219
145
-
Leu
TAA
[ENA]
¢þ
>WENV181030377
ODXG01011080
[ODXG] human metagenome; G_DNA_Anterior nares
223
148
-
Asp
GTC
[ENA]
¢þ
>WENV181030362
ODXG01004937
[ODXG] human metagenome; G_DNA_Anterior nares
238
312
+
Arg
CCG
[ENA]
¢þ
>WENV181030357
ODXG01003473
[ODXG] human metagenome; G_DNA_Anterior nares
239
167
-
Lys
TTT
[ENA]
¢þ
>WENV181030328
ODXG01000039
[ODXG] human metagenome; G_DNA_Anterior nares
241
169
-
Cys
GCA
[ENA]
¢þ
>WENV181030360
ODXG01004682
[ODXG] human metagenome; G_DNA_Anterior nares
267
191
-
Pro
TGG
[ENA]
¢þ
>WENV181030349
ODXG01001783
[ODXG] human metagenome; G_DNA_Anterior nares
271
197
-
Pro
GGG
[ENA]
¢þ
>WENV181030359
ODXG01003747
[ODXG] human metagenome; G_DNA_Anterior nares
275
348
+
Arg
ACG
[ENA]
¢þ
>WENV181030344
ODXG01000763
[ODXG] human metagenome; G_DNA_Anterior nares
275
365
+
Ser
GCT
[ENA]
¢þ
>WENV181030335
ODXG01000483
[ODXG] human metagenome; G_DNA_Anterior nares
283
211
-
Gln
CTG
[ENA]
¢þ
>WENV181030352
ODXG01002823
[ODXG] human metagenome; G_DNA_Anterior nares
317
390
+
Ala
GGC
[ENA]
¢þ
>WENV181030356
ODXG01003473
[ODXG] human metagenome; G_DNA_Anterior nares
321
249
-
Val
TAC
[ENA]
¢þ
>WENV181030327
ODXG01000039
[ODXG] human metagenome; G_DNA_Anterior nares
326
253
-
Gln
TTG
[ENA]
¢þ
>WENV181030338
ODXG01000577
[ODXG] human metagenome; G_DNA_Anterior nares
349
276
-
Met
CAT
[ENA]
¢þ
>WENV181030345
ODXG01000763
[ODXG] human metagenome; G_DNA_Anterior nares
381
452
+
Glu
TTC
[ENA]
¢þ
>WENV181030347
ODXG01000803
[ODXG] human metagenome; G_DNA_Anterior nares
391
317
-
Ile2
CAT
[ENA]
¢þ
>WENV181030326
ODXG01000039
[ODXG] human metagenome; G_DNA_Anterior nares
415
341
-
His
GTG
[ENA]
¢þ
>WENV181030341
ODXG01000671
[ODXG] human metagenome; G_DNA_Anterior nares
418
343
-
Arg
CCG
[ENA]
¢þ
>WENV181030346
ODXG01000763
[ODXG] human metagenome; G_DNA_Anterior nares
463
552
+
Ser
TGA
[ENA]
¢þ
>WENV181030337
ODXG01000577
[ODXG] human metagenome; G_DNA_Anterior nares
473
398
-
Thr
GGT
[ENA]
¢þ
>WENV181030325
ODXG01000039
[ODXG] human metagenome; G_DNA_Anterior nares
497
425
-
Trp
CCA
[ENA]
¢þ
>WENV181030324
ODXG01000039
[ODXG] human metagenome; G_DNA_Anterior nares
582
500
-
Tyr
GTA
[ENA]
¢þ
>WENV181030323
ODXG01000039
[ODXG] human metagenome; G_DNA_Anterior nares
673
599
-
Phe
GAA
[ENA]
¢þ
>WENV181030333
ODXG01000166
[ODXG] human metagenome; G_DNA_Anterior nares
704
779
+
Trp
CCA
[ENA]
¢þ
>WENV181030322
ODXG01000039
[ODXG] human metagenome; G_DNA_Anterior nares
754
679
-
Asp
GTC
[ENA]
¢þ
>WENV181030321
ODXG01000039
[ODXG] human metagenome; G_DNA_Anterior nares
926
853
-
Pro
TGG
[ENA]
¢þ
>WENV181030320
ODXG01000039
[ODXG] human metagenome; G_DNA_Anterior nares
1023
948
-
Arg
ACG
[ENA]
¢þ
>WENV181030319
ODXG01000039
[ODXG] human metagenome; G_DNA_Anterior nares
1118
1032
-
Leu
TAA
[ENA]
¢þ
>WENV181030318
ODXG01000039
[ODXG] human metagenome; G_DNA_Anterior nares
1218
1147
-
Gly
GCC
[ENA]
¢þ
>WENV181030317
ODXG01000039
[ODXG] human metagenome; G_DNA_Anterior nares
1306
1234
-
Thr
TGT
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
BACK