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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA gene List
[ODXI] human metagenome; G_DNA_Posterior fornix
HIT:
43 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV181030419
ODXI01000019
[ODXI] human metagenome; G_DNA_Posterior fornix
58
133
+
Val
TAC
[ENA]
¢þ
>WENV181030435
ODXI01001195
[ODXI] human metagenome; G_DNA_Posterior fornix
62
135
+
Asn
GTT
[ENA]
¢þ
>WENV181030434
ODXI01000893
[ODXI] human metagenome; G_DNA_Posterior fornix
80
154
+
Ala
TGC
[ENA]
¢þ
>WENV181030410
ODXI01000008
[ODXI] human metagenome; G_DNA_Posterior fornix
120
211
+
Ser
GGA
[ENA]
¢þ
>WENV181030420
ODXI01000019
[ODXI] human metagenome; G_DNA_Posterior fornix
134
206
+
Lys
TTT
[ENA]
¢þ
>WENV181030421
ODXI01000019
[ODXI] human metagenome; G_DNA_Posterior fornix
221
304
+
Leu
TAG
[ENA]
¢þ
>WENV181030411
ODXI01000008
[ODXI] human metagenome; G_DNA_Posterior fornix
309
382
+
Glu
TTC
[ENA]
¢þ
>WENV181030422
ODXI01000019
[ODXI] human metagenome; G_DNA_Posterior fornix
336
409
+
Thr
TGT
[ENA]
¢þ
>WENV181030412
ODXI01000008
[ODXI] human metagenome; G_DNA_Posterior fornix
385
459
+
Val
TAC
[ENA]
¢þ
>WENV181030423
ODXI01000019
[ODXI] human metagenome; G_DNA_Posterior fornix
414
485
+
Gly
GCC
[ENA]
¢þ
>WENV181030424
ODXI01000019
[ODXI] human metagenome; G_DNA_Posterior fornix
497
584
+
Leu
TAA
[ENA]
¢þ
>WENV181030425
ODXI01000019
[ODXI] human metagenome; G_DNA_Posterior fornix
593
669
+
Arg
ACG
[ENA]
¢þ
>WENV181030426
ODXI01000019
[ODXI] human metagenome; G_DNA_Posterior fornix
673
746
+
Pro
TGG
[ENA]
¢þ
>WENV181030427
ODXI01000019
[ODXI] human metagenome; G_DNA_Posterior fornix
773
848
+
Met
CAT
[ENA]
¢þ
>WENV181030428
ODXI01000019
[ODXI] human metagenome; G_DNA_Posterior fornix
860
935
+
Ile2
CAT
[ENA]
¢þ
>WENV181030429
ODXI01000019
[ODXI] human metagenome; G_DNA_Posterior fornix
970
1045
+
fMet
CAT
[ENA]
¢þ
>WENV181030430
ODXI01000019
[ODXI] human metagenome; G_DNA_Posterior fornix
1125
1199
+
Phe
GAA
[ENA]
¢þ
>WENV181030431
ODXI01000019
[ODXI] human metagenome; G_DNA_Posterior fornix
1288
1363
+
Ile
GAT
[ENA]
¢þ
>WENV181030432
ODXI01000019
[ODXI] human metagenome; G_DNA_Posterior fornix
1364
1455
+
Ser
GCT
[ENA]
¢þ
>WENV181030433
ODXI01000019
[ODXI] human metagenome; G_DNA_Posterior fornix
4170
4241
+
Glu
TTC
[ENA]
¢þ
>WENV181030418
ODXI01000018
[ODXI] human metagenome; G_DNA_Posterior fornix
5760
5675
-
Leu
CAA
[ENA]
¢þ
>WENV181030417
ODXI01000018
[ODXI] human metagenome; G_DNA_Posterior fornix
5863
5793
-
Cys
GCA
[ENA]
¢þ
>WENV181030416
ODXI01000018
[ODXI] human metagenome; G_DNA_Posterior fornix
5959
5886
-
Gln
TTG
[ENA]
¢þ
>WENV181030415
ODXI01000018
[ODXI] human metagenome; G_DNA_Posterior fornix
6038
5965
-
His
GTG
[ENA]
¢þ
>WENV181030414
ODXI01000018
[ODXI] human metagenome; G_DNA_Posterior fornix
6124
6052
-
Trp
CCA
[ENA]
¢þ
>WENV181030413
ODXI01000008
[ODXI] human metagenome; G_DNA_Posterior fornix
17991
17908
-
Leu
CAG
[ENA]
¢þ
>WENV181030408
ODXI01000005
[ODXI] human metagenome; G_DNA_Posterior fornix
24514
24429
-
Leu
AAG
[ENA]
¢þ
>WENV181030401
ODXI01000002
[ODXI] human metagenome; G_DNA_Posterior fornix
27442
27367
-
Pro
CGG
[ENA]
¢þ
>WENV181030400
ODXI01000002
[ODXI] human metagenome; G_DNA_Posterior fornix
27552
27481
-
Gly
GCC
[ENA]
¢þ
>WENV181030398
ODXI01000001
[ODXI] human metagenome; G_DNA_Posterior fornix
35381
35295
-
Ser
CGA
[ENA]
¢þ
>WENV181030403
ODXI01000004
[ODXI] human metagenome; G_DNA_Posterior fornix
36426
36354
-
Thr
AGT
[ENA]
¢þ
>WENV181030407
ODXI01000005
[ODXI] human metagenome; G_DNA_Posterior fornix
39296
39223
-
Gln
TTG
[ENA]
¢þ
>WENV181030406
ODXI01000005
[ODXI] human metagenome; G_DNA_Posterior fornix
39385
39302
-
Tyr
GTA
[ENA]
¢þ
>WENV181030405
ODXI01000005
[ODXI] human metagenome; G_DNA_Posterior fornix
40589
40516
-
Gln
TTG
[ENA]
¢þ
>WENV181030409
ODXI01000007
[ODXI] human metagenome; G_DNA_Posterior fornix
45089
45161
+
Thr
GGT
[ENA]
¢þ
>WENV181030397
ODXI01000001
[ODXI] human metagenome; G_DNA_Posterior fornix
48661
48588
-
Arg
TCT
[ENA]
¢þ
>WENV181030404
ODXI01000005
[ODXI] human metagenome; G_DNA_Posterior fornix
64352
64423
+
Arg
CCG
[ENA]
¢þ
>WENV181030402
ODXI01000004
[ODXI] human metagenome; G_DNA_Posterior fornix
89808
89734
-
Lys
CTT
[ENA]
¢þ
>WENV181030393
ODXI01000001
[ODXI] human metagenome; G_DNA_Posterior fornix
107952
108024
+
Arg
CCT
[ENA]
¢þ
>WENV181030399
ODXI01000002
[ODXI] human metagenome; G_DNA_Posterior fornix
134656
134728
+
Gly
CCC
[ENA]
¢þ
>WENV181030394
ODXI01000001
[ODXI] human metagenome; G_DNA_Posterior fornix
189925
189998
+
Glu
CTC
[ENA]
¢þ
>WENV181030395
ODXI01000001
[ODXI] human metagenome; G_DNA_Posterior fornix
190002
190074
+
Gln
CTG
[ENA]
¢þ
>WENV181030396
ODXI01000001
[ODXI] human metagenome; G_DNA_Posterior fornix
205902
205828
-
Thr
CGT
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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