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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA gene List
[ODYK] human metagenome; G_DNA_Posterior fornix
HIT:
80 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV181057222
ODYK01000584
[ODYK] human metagenome; G_DNA_Posterior fornix
1
72
+
Gln
TTG
[ENA]
¢þ
>WENV181057180
ODYK01000094
[ODYK] human metagenome; G_DNA_Posterior fornix
3
73
+
Cys
GCA
[ENA]
¢þ
>WENV181057218
ODYK01000351
[ODYK] human metagenome; G_DNA_Posterior fornix
42
117
+
Arg
ACG
[ENA]
¢þ
>WENV181057235
ODYK01001677
[ODYK] human metagenome; G_DNA_Posterior fornix
61
134
+
Gln
TTG
[ENA]
¢þ
>WENV181057185
ODYK01000146
[ODYK] human metagenome; G_DNA_Posterior fornix
65
157
+
Ser
GGA
[ENA]
¢þ
>WENV181057232
ODYK01001068
[ODYK] human metagenome; G_DNA_Posterior fornix
66
140
+
Asn
GTT
[ENA]
¢þ
>WENV181057237
ODYK01001815
[ODYK] human metagenome; G_DNA_Posterior fornix
74
-1
-
Asn
GTT
[ENA]
¢þ
>WENV181057234
ODYK01001464
[ODYK] human metagenome; G_DNA_Posterior fornix
79
5
-
Gly
GCC
[ENA]
¢þ
>WENV181057238
ODYK01002049
[ODYK] human metagenome; G_DNA_Posterior fornix
79
5
-
Gly
GCC
[ENA]
¢þ
>WENV181057216
ODYK01000333
[ODYK] human metagenome; G_DNA_Posterior fornix
84
1
-
Tyr
GTA
[ENA]
¢þ
>WENV181057181
ODYK01000094
[ODYK] human metagenome; G_DNA_Posterior fornix
114
200
+
Leu
CAA
[ENA]
¢þ
>WENV181057236
ODYK01001730
[ODYK] human metagenome; G_DNA_Posterior fornix
136
64
-
Trp
CCA
[ENA]
¢þ
>WENV181057215
ODYK01000333
[ODYK] human metagenome; G_DNA_Posterior fornix
163
88
-
Phe
GAA
[ENA]
¢þ
>WENV181057233
ODYK01001282
[ODYK] human metagenome; G_DNA_Posterior fornix
186
111
-
Ala
TGC
[ENA]
¢þ
>WENV181057214
ODYK01000333
[ODYK] human metagenome; G_DNA_Posterior fornix
243
168
-
Asp
GTC
[ENA]
¢þ
>WENV181057213
ODYK01000333
[ODYK] human metagenome; G_DNA_Posterior fornix
320
245
-
fMet
CAT
[ENA]
¢þ
>WENV181057212
ODYK01000333
[ODYK] human metagenome; G_DNA_Posterior fornix
417
331
-
Ser
TGA
[ENA]
¢þ
>WENV181057223
ODYK01000584
[ODYK] human metagenome; G_DNA_Posterior fornix
420
503
+
Tyr
GTA
[ENA]
¢þ
>WENV181057224
ODYK01000584
[ODYK] human metagenome; G_DNA_Posterior fornix
507
580
+
Gln
TTG
[ENA]
¢þ
>WENV181057195
ODYK01000328
[ODYK] human metagenome; G_DNA_Posterior fornix
512
441
-
Gly
CCC
[ENA]
¢þ
>WENV181057211
ODYK01000333
[ODYK] human metagenome; G_DNA_Posterior fornix
523
450
-
Glu
TTC
[ENA]
¢þ
>WENV181057228
ODYK01000623
[ODYK] human metagenome; G_DNA_Posterior fornix
554
479
-
Arg
CCT
[ENA]
¢þ
>WENV181057192
ODYK01000222
[ODYK] human metagenome; G_DNA_Posterior fornix
566
494
-
Gln
CTG
[ENA]
¢þ
>WENV181057231
ODYK01000771
[ODYK] human metagenome; G_DNA_Posterior fornix
602
529
-
Pro
CGG
[ENA]
¢þ
>WENV181057191
ODYK01000222
[ODYK] human metagenome; G_DNA_Posterior fornix
644
571
-
Glu
CTC
[ENA]
¢þ
>WENV181057184
ODYK01000128
[ODYK] human metagenome; G_DNA_Posterior fornix
644
718
+
Thr
AGT
[ENA]
¢þ
>WENV181057230
ODYK01000647
[ODYK] human metagenome; G_DNA_Posterior fornix
720
646
-
Ala
TGC
[ENA]
¢þ
>WENV181057229
ODYK01000647
[ODYK] human metagenome; G_DNA_Posterior fornix
850
776
-
Ile
GAT
[ENA]
¢þ
>WENV181057225
ODYK01000584
[ODYK] human metagenome; G_DNA_Posterior fornix
927
1008
+
Tyr
GTA
[ENA]
¢þ
>WENV181057226
ODYK01000584
[ODYK] human metagenome; G_DNA_Posterior fornix
1012
1084
+
Trp
CCA
[ENA]
¢þ
>WENV181057227
ODYK01000584
[ODYK] human metagenome; G_DNA_Posterior fornix
1097
1170
+
His
GTG
[ENA]
¢þ
>WENV181057217
ODYK01000341
[ODYK] human metagenome; G_DNA_Posterior fornix
1275
1187
-
Ser
CGA
[ENA]
¢þ
>WENV181057186
ODYK01000146
[ODYK] human metagenome; G_DNA_Posterior fornix
1284
1356
+
Glu
TTC
[ENA]
¢þ
>WENV181057187
ODYK01000146
[ODYK] human metagenome; G_DNA_Posterior fornix
1360
1434
+
Val
TAC
[ENA]
¢þ
>WENV181057210
ODYK01000333
[ODYK] human metagenome; G_DNA_Posterior fornix
1368
1278
-
Ser
GCT
[ENA]
¢þ
>WENV181057221
ODYK01000556
[ODYK] human metagenome; G_DNA_Posterior fornix
1391
1306
-
Leu
CAA
[ENA]
¢þ
>WENV181057209
ODYK01000333
[ODYK] human metagenome; G_DNA_Posterior fornix
1446
1370
-
Ile
GAT
[ENA]
¢þ
>WENV181057208
ODYK01000333
[ODYK] human metagenome; G_DNA_Posterior fornix
1614
1540
-
Phe
GAA
[ENA]
¢þ
>WENV181057190
ODYK01000179
[ODYK] human metagenome; G_DNA_Posterior fornix
1663
1589
-
Arg
CCT
[ENA]
¢þ
>WENV181057207
ODYK01000333
[ODYK] human metagenome; G_DNA_Posterior fornix
1694
1619
-
Asp
GTC
[ENA]
¢þ
>WENV181057206
ODYK01000333
[ODYK] human metagenome; G_DNA_Posterior fornix
1771
1696
-
fMet
CAT
[ENA]
¢þ
>WENV181057219
ODYK01000383
[ODYK] human metagenome; G_DNA_Posterior fornix
1781
1694
-
Leu
AAG
[ENA]
¢þ
>WENV181057194
ODYK01000259
[ODYK] human metagenome; G_DNA_Posterior fornix
1796
1881
+
Leu
CAG
[ENA]
¢þ
>WENV181057220
ODYK01000434
[ODYK] human metagenome; G_DNA_Posterior fornix
1798
1722
-
Arg
TCT
[ENA]
¢þ
>WENV181057205
ODYK01000333
[ODYK] human metagenome; G_DNA_Posterior fornix
1868
1793
-
Ile2
CAT
[ENA]
¢þ
>WENV181057204
ODYK01000333
[ODYK] human metagenome; G_DNA_Posterior fornix
1955
1880
-
Met
CAT
[ENA]
¢þ
>WENV181057203
ODYK01000333
[ODYK] human metagenome; G_DNA_Posterior fornix
2058
1985
-
Pro
TGG
[ENA]
¢þ
>WENV181057202
ODYK01000333
[ODYK] human metagenome; G_DNA_Posterior fornix
2140
2066
-
Arg
ACG
[ENA]
¢þ
>WENV181057201
ODYK01000333
[ODYK] human metagenome; G_DNA_Posterior fornix
2234
2149
-
Leu
TAA
[ENA]
¢þ
>WENV181057193
ODYK01000247
[ODYK] human metagenome; G_DNA_Posterior fornix
2281
2210
-
Arg
CCG
[ENA]
¢þ
>WENV181057182
ODYK01000100
[ODYK] human metagenome; G_DNA_Posterior fornix
2301
2215
-
Leu
CAG
[ENA]
¢þ
>WENV181057200
ODYK01000333
[ODYK] human metagenome; G_DNA_Posterior fornix
2317
2246
-
Gly
GCC
[ENA]
¢þ
>WENV181057199
ODYK01000333
[ODYK] human metagenome; G_DNA_Posterior fornix
2401
2327
-
Thr
TGT
[ENA]
¢þ
>WENV181057198
ODYK01000333
[ODYK] human metagenome; G_DNA_Posterior fornix
2507
2424
-
Leu
TAG
[ENA]
¢þ
>WENV181057197
ODYK01000333
[ODYK] human metagenome; G_DNA_Posterior fornix
2592
2520
-
Lys
TTT
[ENA]
¢þ
>WENV181057196
ODYK01000333
[ODYK] human metagenome; G_DNA_Posterior fornix
2670
2596
-
Val
TAC
[ENA]
¢þ
>WENV181057183
ODYK01000119
[ODYK] human metagenome; G_DNA_Posterior fornix
4105
4032
-
Lys
CTT
[ENA]
¢þ
>WENV181057161
ODYK01000004
[ODYK] human metagenome; G_DNA_Posterior fornix
4164
4237
+
Gln
TTG
[ENA]
¢þ
>WENV181057188
ODYK01000157
[ODYK] human metagenome; G_DNA_Posterior fornix
4417
4491
+
Arg
ACG
[ENA]
¢þ
>WENV181057189
ODYK01000157
[ODYK] human metagenome; G_DNA_Posterior fornix
4499
4572
+
Pro
TGG
[ENA]
¢þ
>WENV181057176
ODYK01000067
[ODYK] human metagenome; G_DNA_Posterior fornix
4749
4822
+
Arg
CCG
[ENA]
¢þ
>WENV181057179
ODYK01000087
[ODYK] human metagenome; G_DNA_Posterior fornix
5817
5745
-
Thr
GGT
[ENA]
¢þ
>WENV181057175
ODYK01000054
[ODYK] human metagenome; G_DNA_Posterior fornix
7292
7367
+
Thr
CGT
[ENA]
¢þ
>WENV181057178
ODYK01000077
[ODYK] human metagenome; G_DNA_Posterior fornix
7933
7861
-
Thr
GGT
[ENA]
¢þ
>WENV181057173
ODYK01000045
[ODYK] human metagenome; G_DNA_Posterior fornix
8436
8510
+
Lys
CTT
[ENA]
¢þ
>WENV181057174
ODYK01000045
[ODYK] human metagenome; G_DNA_Posterior fornix
8980
9054
+
Lys
CTT
[ENA]
¢þ
>WENV181057177
ODYK01000077
[ODYK] human metagenome; G_DNA_Posterior fornix
10822
10750
-
Thr
GGT
[ENA]
¢þ
>WENV181057171
ODYK01000021
[ODYK] human metagenome; G_DNA_Posterior fornix
12874
12944
+
Gly
CCC
[ENA]
¢þ
>WENV181057172
ODYK01000042
[ODYK] human metagenome; G_DNA_Posterior fornix
14062
14136
+
Thr
AGT
[ENA]
¢þ
>WENV181057162
ODYK01000004
[ODYK] human metagenome; G_DNA_Posterior fornix
16199
16280
+
Tyr
GTA
[ENA]
¢þ
>WENV181057163
ODYK01000004
[ODYK] human metagenome; G_DNA_Posterior fornix
16314
16387
+
Gln
TTG
[ENA]
¢þ
>WENV181057164
ODYK01000004
[ODYK] human metagenome; G_DNA_Posterior fornix
33329
33414
+
Leu
AAG
[ENA]
¢þ
>WENV181057169
ODYK01000005
[ODYK] human metagenome; G_DNA_Posterior fornix
34903
34831
-
Trp
CCA
[ENA]
¢þ
>WENV181057170
ODYK01000006
[ODYK] human metagenome; G_DNA_Posterior fornix
38759
38684
-
Arg
TCT
[ENA]
¢þ
>WENV181057165
ODYK01000004
[ODYK] human metagenome; G_DNA_Posterior fornix
51179
51266
+
Ser
TGA
[ENA]
¢þ
>WENV181057166
ODYK01000004
[ODYK] human metagenome; G_DNA_Posterior fornix
51272
51347
+
Asp
GTC
[ENA]
¢þ
>WENV181057167
ODYK01000004
[ODYK] human metagenome; G_DNA_Posterior fornix
51353
51428
+
His
GTG
[ENA]
¢þ
>WENV181057168
ODYK01000004
[ODYK] human metagenome; G_DNA_Posterior fornix
51432
51506
+
Val
TAC
[ENA]
¢þ
>WENV181057160
ODYK01000001
[ODYK] human metagenome; G_DNA_Posterior fornix
70241
70169
-
Gln
CTG
[ENA]
¢þ
>WENV181057159
ODYK01000001
[ODYK] human metagenome; G_DNA_Posterior fornix
70319
70246
-
Glu
CTC
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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