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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA gene List
[ODYZ] human gut metagenome; human gut
HIT:
13 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV181066255
ODYZ01003670
[ODYZ] human gut metagenome; human gut
37
111
+
Asp
GTC
[ENA]
¢þ
>WENV181066258
ODYZ01004580
[ODYZ] human gut metagenome; human gut
63
138
+
Gln
TTG
[ENA]
¢þ
>WENV181066256
ODYZ01004217
[ODYZ] human gut metagenome; human gut
64
138
+
Phe
GAA
[ENA]
¢þ
>WENV181066253
ODYZ01002620
[ODYZ] human gut metagenome; human gut
75
148
+
Gly
GCC
[ENA]
¢þ
>WENV181066254
ODYZ01003010
[ODYZ] human gut metagenome; human gut
112
187
+
Trp
CCA
[ENA]
¢þ
>WENV181066257
ODYZ01004374
[ODYZ] human gut metagenome; human gut
114
29
-
Ser
GGA
[ENA]
¢þ
>WENV181066250
ODYZ01001488
[ODYZ] human gut metagenome; human gut
134
61
-
Glu
CTC
[ENA]
¢þ
>WENV181066251
ODYZ01001866
[ODYZ] human gut metagenome; human gut
148
222
+
Val
TAC
[ENA]
¢þ
>WENV181066248
ODYZ01000809
[ODYZ] human gut metagenome; human gut
149
75
-
Lys
CTT
[ENA]
¢þ
>WENV181066252
ODYZ01002409
[ODYZ] human gut metagenome; human gut
159
84
-
Pro
CGG
[ENA]
¢þ
>WENV181066249
ODYZ01001482
[ODYZ] human gut metagenome; human gut
227
145
-
Tyr
GTA
[ENA]
¢þ
>WENV181066247
ODYZ01000220
[ODYZ] human gut metagenome; human gut
240
314
+
Pro
GGG
[ENA]
¢þ
>WENV181066246
ODYZ01000048
[ODYZ] human gut metagenome; human gut
294
368
+
Ala
TGC
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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