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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA gene List
[ODZG] human gut metagenome; human gut
HIT:
55 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV181066312
ODZG01000805
[ODZG] human gut metagenome; human gut
35
111
+
fMet
CAT
[ENA]
¢þ
>WENV181066348
ODZG01012572
[ODZG] human gut metagenome; human gut
38
124
+
Ser
CGA
[ENA]
¢þ
>WENV181066356
ODZG01016907
[ODZG] human gut metagenome; human gut
70
145
+
Trp
CCA
[ENA]
¢þ
>WENV181066354
ODZG01016751
[ODZG] human gut metagenome; human gut
82
8
-
Ile
GAT
[ENA]
¢þ
>WENV181066337
ODZG01005418
[ODZG] human gut metagenome; human gut
83
10
-
Met
CAT
[ENA]
¢þ
>WENV181066347
ODZG01009646
[ODZG] human gut metagenome; human gut
92
179
+
Ser
TGA
[ENA]
¢þ
>WENV181066358
ODZG01019046
[ODZG] human gut metagenome; human gut
97
170
+
Asn
GTT
[ENA]
¢þ
>WENV181066350
ODZG01013911
[ODZG] human gut metagenome; human gut
98
170
+
Lys
TTT
[ENA]
¢þ
>WENV181066340
ODZG01005978
[ODZG] human gut metagenome; human gut
102
175
+
Thr
CGT
[ENA]
¢þ
>WENV181066343
ODZG01007047
[ODZG] human gut metagenome; human gut
105
179
+
Arg
ACG
[ENA]
¢þ
>WENV181066338
ODZG01005771
[ODZG] human gut metagenome; human gut
108
180
+
Gln
CTG
[ENA]
¢þ
>WENV181066334
ODZG01004923
[ODZG] human gut metagenome; human gut
108
182
+
Ala
TGC
[ENA]
¢þ
>WENV181066326
ODZG01002575
[ODZG] human gut metagenome; human gut
110
34
-
Arg
ACG
[ENA]
¢þ
>WENV181066339
ODZG01005960
[ODZG] human gut metagenome; human gut
112
184
+
Glu
TTC
[ENA]
¢þ
>WENV181066357
ODZG01018793
[ODZG] human gut metagenome; human gut
114
39
-
Lys
TTT
[ENA]
¢þ
>WENV181066332
ODZG01003622
[ODZG] human gut metagenome; human gut
117
34
-
Leu
CAG
[ENA]
¢þ
>WENV181066335
ODZG01005067
[ODZG] human gut metagenome; human gut
117
188
+
Gln
TTG
[ENA]
¢þ
>WENV181066355
ODZG01016891
[ODZG] human gut metagenome; human gut
119
193
+
Trp
CCA
[ENA]
¢þ
>WENV181066352
ODZG01016540
[ODZG] human gut metagenome; human gut
133
47
-
Leu
AAG
[ENA]
¢þ
>WENV181066324
ODZG01002282
[ODZG] human gut metagenome; human gut
134
61
-
Glu
CTC
[ENA]
¢þ
>WENV181066319
ODZG01001777
[ODZG] human gut metagenome; human gut
135
61
-
Ile
GAT
[ENA]
¢þ
>WENV181066342
ODZG01007006
[ODZG] human gut metagenome; human gut
137
212
+
Thr
CGT
[ENA]
¢þ
>WENV181066315
ODZG01001068
[ODZG] human gut metagenome; human gut
141
214
+
Ala
GGC
[ENA]
¢þ
>WENV181066345
ODZG01007514
[ODZG] human gut metagenome; human gut
146
60
-
Ser
GCT
[ENA]
¢þ
>WENV181066353
ODZG01016751
[ODZG] human gut metagenome; human gut
161
86
-
Ala
TGC
[ENA]
¢þ
>WENV181066330
ODZG01002885
[ODZG] human gut metagenome; human gut
161
86
-
His
GTG
[ENA]
¢þ
>WENV181066321
ODZG01001921
[ODZG] human gut metagenome; human gut
168
242
+
Arg
TCT
[ENA]
¢þ
>WENV181066351
ODZG01015236
[ODZG] human gut metagenome; human gut
169
84
-
Ser
CGA
[ENA]
¢þ
>WENV181066349
ODZG01013300
[ODZG] human gut metagenome; human gut
171
98
-
Ala
TGC
[ENA]
¢þ
>WENV181066346
ODZG01009527
[ODZG] human gut metagenome; human gut
176
89
-
Ser
CGA
[ENA]
¢þ
>WENV181066344
ODZG01007259
[ODZG] human gut metagenome; human gut
178
104
-
Ile2
CAT
[ENA]
¢þ
>WENV181066327
ODZG01002675
[ODZG] human gut metagenome; human gut
187
114
-
Lys
TTT
[ENA]
¢þ
>WENV181066329
ODZG01002793
[ODZG] human gut metagenome; human gut
188
114
-
Thr
TGT
[ENA]
¢þ
>WENV181066341
ODZG01005999
[ODZG] human gut metagenome; human gut
218
292
+
Pro
TGG
[ENA]
¢þ
>WENV181066311
ODZG01000700
[ODZG] human gut metagenome; human gut
219
293
+
Lys
CTT
[ENA]
¢þ
>WENV181066322
ODZG01002147
[ODZG] human gut metagenome; human gut
225
299
+
Arg
TCT
[ENA]
¢þ
>WENV181066318
ODZG01001777
[ODZG] human gut metagenome; human gut
231
158
-
Ala
TGC
[ENA]
¢þ
>WENV181066305
ODZG01000281
[ODZG] human gut metagenome; human gut
237
310
+
Gly
GCC
[ENA]
¢þ
>WENV181066331
ODZG01003370
[ODZG] human gut metagenome; human gut
239
325
+
Ser
TGA
[ENA]
¢þ
>WENV181066313
ODZG01000808
[ODZG] human gut metagenome; human gut
240
315
+
Arg
CCG
[ENA]
¢þ
>WENV181066336
ODZG01005418
[ODZG] human gut metagenome; human gut
242
160
-
Tyr
GTA
[ENA]
¢þ
>WENV181066317
ODZG01001593
[ODZG] human gut metagenome; human gut
242
168
-
Val
TAC
[ENA]
¢þ
>WENV181066323
ODZG01002182
[ODZG] human gut metagenome; human gut
271
200
-
Gln
TTG
[ENA]
¢þ
>WENV181066333
ODZG01003806
[ODZG] human gut metagenome; human gut
273
199
-
Leu
AAG
[ENA]
¢þ
>WENV181066328
ODZG01002719
[ODZG] human gut metagenome; human gut
289
215
-
Leu
CAA
[ENA]
¢þ
>WENV181066310
ODZG01000691
[ODZG] human gut metagenome; human gut
299
226
-
Arg
CCT
[ENA]
¢þ
>WENV181066320
ODZG01001891
[ODZG] human gut metagenome; human gut
311
230
-
Leu
TAG
[ENA]
¢þ
>WENV181066325
ODZG01002389
[ODZG] human gut metagenome; human gut
326
252
-
Asp
GTC
[ENA]
¢þ
>WENV181066306
ODZG01000281
[ODZG] human gut metagenome; human gut
356
428
+
Val
GAC
[ENA]
¢þ
>WENV181066314
ODZG01000852
[ODZG] human gut metagenome; human gut
409
484
+
His
GTG
[ENA]
¢þ
>WENV181066316
ODZG01001131
[ODZG] human gut metagenome; human gut
440
366
-
Val
CAC
[ENA]
¢þ
>WENV181066307
ODZG01000281
[ODZG] human gut metagenome; human gut
458
531
+
Val
CAC
[ENA]
¢þ
>WENV181066308
ODZG01000281
[ODZG] human gut metagenome; human gut
555
628
+
Ala
GGC
[ENA]
¢þ
>WENV181066309
ODZG01000466
[ODZG] human gut metagenome; human gut
575
502
-
Gly
TCC
[ENA]
¢þ
>WENV181066304
ODZG01000221
[ODZG] human gut metagenome; human gut
630
556
-
Pro
GGG
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
BACK