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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA gene List
[OEAD] human gut metagenome; human gut
HIT:
29 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV181069808
OEAD01003940
[OEAD] human gut metagenome; human gut
33
105
+
Cys
GCA
[ENA]
¢þ
>WENV181069802
OEAD01002668
[OEAD] human gut metagenome; human gut
43
118
+
Phe
GAA
[ENA]
¢þ
>WENV181069809
OEAD01004368
[OEAD] human gut metagenome; human gut
71
146
+
Gly
GCC
[ENA]
¢þ
>WENV181069801
OEAD01002136
[OEAD] human gut metagenome; human gut
76
149
+
Ala
TGC
[ENA]
¢þ
>WENV181069815
OEAD01005973
[OEAD] human gut metagenome; human gut
86
11
-
Gly
GCC
[ENA]
¢þ
>WENV181069813
OEAD01005559
[OEAD] human gut metagenome; human gut
95
19
-
Asp
GTC
[ENA]
¢þ
>WENV181069807
OEAD01003118
[OEAD] human gut metagenome; human gut
99
24
-
Ala
GGC
[ENA]
¢þ
>WENV181069811
OEAD01004503
[OEAD] human gut metagenome; human gut
104
178
+
Ile
GAT
[ENA]
¢þ
>WENV181069794
OEAD01000427
[OEAD] human gut metagenome; human gut
106
30
-
Asp
GTC
[ENA]
¢þ
>WENV181069804
OEAD01002674
[OEAD] human gut metagenome; human gut
111
184
+
Gln
CTG
[ENA]
¢þ
>WENV181069797
OEAD01001063
[OEAD] human gut metagenome; human gut
120
195
+
Thr
CGT
[ENA]
¢þ
>WENV181069803
OEAD01002668
[OEAD] human gut metagenome; human gut
126
202
+
Met
CAT
[ENA]
¢þ
>WENV181069798
OEAD01001541
[OEAD] human gut metagenome; human gut
128
203
+
Ala
TGC
[ENA]
¢þ
>WENV181069791
OEAD01000227
[OEAD] human gut metagenome; human gut
134
59
-
Lys
CTT
[ENA]
¢þ
>WENV181069799
OEAD01001977
[OEAD] human gut metagenome; human gut
136
224
+
Leu
TAA
[ENA]
¢þ
>WENV181069814
OEAD01005835
[OEAD] human gut metagenome; human gut
149
64
-
Leu
AAG
[ENA]
¢þ
>WENV181069812
OEAD01005559
[OEAD] human gut metagenome; human gut
181
106
-
Val
TAC
[ENA]
¢þ
>WENV181069806
OEAD01003080
[OEAD] human gut metagenome; human gut
183
93
-
Ser
GCT
[ENA]
¢þ
>WENV181069810
OEAD01004497
[OEAD] human gut metagenome; human gut
186
111
-
Lys
TTT
[ENA]
¢þ
>WENV181069805
OEAD01003062
[OEAD] human gut metagenome; human gut
186
111
-
Ala
CGC
[ENA]
¢þ
>WENV181069793
OEAD01000427
[OEAD] human gut metagenome; human gut
187
112
-
Val
TAC
[ENA]
¢þ
>WENV181069796
OEAD01000535
[OEAD] human gut metagenome; human gut
194
120
-
Gln
TTG
[ENA]
¢þ
>WENV181069800
OEAD01002123
[OEAD] human gut metagenome; human gut
215
141
-
Val
GAC
[ENA]
¢þ
>WENV181069792
OEAD01000384
[OEAD] human gut metagenome; human gut
320
246
-
Gln
TTG
[ENA]
¢þ
>WENV181069795
OEAD01000436
[OEAD] human gut metagenome; human gut
351
277
-
Gly
GCC
[ENA]
¢þ
>WENV181069790
OEAD01000080
[OEAD] human gut metagenome; human gut
534
458
-
Ile
GAT
[ENA]
¢þ
>WENV181069789
OEAD01000080
[OEAD] human gut metagenome; human gut
634
559
-
Ala
TGC
[ENA]
¢þ
>WENV181069787
OEAD01000045
[OEAD] human gut metagenome; human gut
1077
1152
+
Ala
TGC
[ENA]
¢þ
>WENV181069788
OEAD01000045
[OEAD] human gut metagenome; human gut
1347
1422
+
Ile
GAT
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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