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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA gene List
[OEDU] human gut metagenome; human gut
HIT:
36 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV181104414
OEDU01004735
[OEDU] human gut metagenome; human gut
26
114
+
Leu
TAA
[ENA]
¢þ
>WENV181104407
OEDU01003193
[OEDU] human gut metagenome; human gut
31
104
+
Lys
TTT
[ENA]
¢þ
>WENV181104403
OEDU01002317
[OEDU] human gut metagenome; human gut
39
112
+
Gly
TCC
[ENA]
¢þ
>WENV181104406
OEDU01002587
[OEDU] human gut metagenome; human gut
58
131
+
Arg
CCT
[ENA]
¢þ
>WENV181104396
OEDU01000976
[OEDU] human gut metagenome; human gut
62
136
+
Ile
GAT
[ENA]
¢þ
>WENV181104418
OEDU01006747
[OEDU] human gut metagenome; human gut
88
161
+
Gly
GCC
[ENA]
¢þ
>WENV181104416
OEDU01004884
[OEDU] human gut metagenome; human gut
109
23
-
Ser
CGA
[ENA]
¢þ
>WENV181104389
OEDU01000440
[OEDU] human gut metagenome; human gut
112
187
+
Asn
GTT
[ENA]
¢þ
>WENV181104415
OEDU01004735
[OEDU] human gut metagenome; human gut
121
194
+
Gly
TCC
[ENA]
¢þ
>WENV181104419
OEDU01006990
[OEDU] human gut metagenome; human gut
134
59
-
Arg
ACG
[ENA]
¢þ
>WENV181104410
OEDU01003575
[OEDU] human gut metagenome; human gut
136
53
-
Leu
TAG
[ENA]
¢þ
>WENV181104417
OEDU01005783
[OEDU] human gut metagenome; human gut
142
66
-
Pro
GGG
[ENA]
¢þ
>WENV181104408
OEDU01003336
[OEDU] human gut metagenome; human gut
169
242
+
Gly
CCC
[ENA]
¢þ
>WENV181104413
OEDU01004309
[OEDU] human gut metagenome; human gut
174
99
-
Trp
CCA
[ENA]
¢þ
>WENV181104397
OEDU01000976
[OEDU] human gut metagenome; human gut
175
248
+
Ala
TGC
[ENA]
¢þ
>WENV181104405
OEDU01002390
[OEDU] human gut metagenome; human gut
179
104
-
Gly
GCC
[ENA]
¢þ
>WENV181104393
OEDU01000771
[OEDU] human gut metagenome; human gut
189
100
-
Ser
GCT
[ENA]
¢þ
>WENV181104409
OEDU01003575
[OEDU] human gut metagenome; human gut
213
141
-
Lys
TTT
[ENA]
¢þ
>WENV181104411
OEDU01003607
[OEDU] human gut metagenome; human gut
220
144
-
fMet
CAT
[ENA]
¢þ
>WENV181104412
OEDU01003893
[OEDU] human gut metagenome; human gut
248
172
-
Arg
TCT
[ENA]
¢þ
>WENV181104398
OEDU01000976
[OEDU] human gut metagenome; human gut
249
322
+
Ala
GGC
[ENA]
¢þ
>WENV181104387
OEDU01000321
[OEDU] human gut metagenome; human gut
270
344
+
His
GTG
[ENA]
¢þ
>WENV181104390
OEDU01000482
[OEDU] human gut metagenome; human gut
276
202
-
Lys
CTT
[ENA]
¢þ
>WENV181104404
OEDU01002390
[OEDU] human gut metagenome; human gut
285
212
-
Val
CAC
[ENA]
¢þ
>WENV181104400
OEDU01001257
[OEDU] human gut metagenome; human gut
399
473
+
Asp
GTC
[ENA]
¢þ
>WENV181104401
OEDU01001294
[OEDU] human gut metagenome; human gut
403
484
+
Leu
TAA
[ENA]
¢þ
>WENV181104402
OEDU01001494
[OEDU] human gut metagenome; human gut
426
341
-
Leu
CAG
[ENA]
¢þ
>WENV181104395
OEDU01000895
[OEDU] human gut metagenome; human gut
432
358
-
Met
CAT
[ENA]
¢þ
>WENV181104399
OEDU01001233
[OEDU] human gut metagenome; human gut
464
383
-
Leu
TAG
[ENA]
¢þ
>WENV181104394
OEDU01000895
[OEDU] human gut metagenome; human gut
592
510
-
Tyr
GTA
[ENA]
¢þ
>WENV181104391
OEDU01000548
[OEDU] human gut metagenome; human gut
624
711
+
Ser
GGA
[ENA]
¢þ
>WENV181104384
OEDU01000014
[OEDU] human gut metagenome; human gut
625
700
+
Arg
CCG
[ENA]
¢þ
>WENV181104388
OEDU01000377
[OEDU] human gut metagenome; human gut
776
687
-
Leu
GAG
[ENA]
¢þ
>WENV181104392
OEDU01000569
[OEDU] human gut metagenome; human gut
859
773
-
Ser
TGA
[ENA]
¢þ
>WENV181104386
OEDU01000181
[OEDU] human gut metagenome; human gut
1241
1317
+
Pro
TGG
[ENA]
¢þ
>WENV181104385
OEDU01000128
[OEDU] human gut metagenome; human gut
1697
1771
+
Thr
TGT
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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