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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA gene List
[OEEF] human gut metagenome; human gut
HIT:
33 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV181106456
OEEF01006556
[OEEF] human gut metagenome; human gut
28
101
+
Gly
GCC
[ENA]
¢þ
>WENV181106455
OEEF01006165
[OEEF] human gut metagenome; human gut
43
113
+
Gly
TCC
[ENA]
¢þ
>WENV181106449
OEEF01003569
[OEEF] human gut metagenome; human gut
43
118
+
Val
TAC
[ENA]
¢þ
>WENV181106438
OEEF01000523
[OEEF] human gut metagenome; human gut
47
119
+
Thr
TGT
[ENA]
¢þ
>WENV181106464
OEEF01011913
[OEEF] human gut metagenome; human gut
49
122
+
Cys
GCA
[ENA]
¢þ
>WENV181106436
OEEF01000217
[OEEF] human gut metagenome; human gut
69
141
+
Lys
CTT
[ENA]
¢þ
>WENV181106463
OEEF01011423
[OEEF] human gut metagenome; human gut
71
154
+
Leu
TAG
[ENA]
¢þ
>WENV181106458
OEEF01007629
[OEEF] human gut metagenome; human gut
75
150
+
Thr
GGT
[ENA]
¢þ
>WENV181106460
OEEF01010090
[OEEF] human gut metagenome; human gut
96
12
-
Tyr
GTA
[ENA]
¢þ
>WENV181106461
OEEF01010799
[OEEF] human gut metagenome; human gut
102
27
-
Pro
TGG
[ENA]
¢þ
>WENV181106468
OEEF01014732
[OEEF] human gut metagenome; human gut
112
28
-
Leu
GAG
[ENA]
¢þ
>WENV181106466
OEEF01013246
[OEEF] human gut metagenome; human gut
116
34
-
Tyr
GTA
[ENA]
¢þ
>WENV181106447
OEEF01003409
[OEEF] human gut metagenome; human gut
116
191
+
Asp
GTC
[ENA]
¢þ
>WENV181106450
OEEF01003569
[OEEF] human gut metagenome; human gut
123
199
+
Asp
GTC
[ENA]
¢þ
>WENV181106462
OEEF01010891
[OEEF] human gut metagenome; human gut
131
56
-
His
GTG
[ENA]
¢þ
>WENV181106453
OEEF01004471
[OEEF] human gut metagenome; human gut
133
206
+
Ile
GAT
[ENA]
¢þ
>WENV181106439
OEEF01000523
[OEEF] human gut metagenome; human gut
148
231
+
Tyr
GTA
[ENA]
¢þ
>WENV181106440
OEEF01001284
[OEEF] human gut metagenome; human gut
154
229
+
Ala
TGC
[ENA]
¢þ
>WENV181106465
OEEF01012884
[OEEF] human gut metagenome; human gut
158
82
-
Ile2
CAT
[ENA]
¢þ
>WENV181106454
OEEF01005390
[OEEF] human gut metagenome; human gut
165
90
-
Arg
CCT
[ENA]
¢þ
>WENV181106444
OEEF01002544
[OEEF] human gut metagenome; human gut
176
101
-
Arg
ACG
[ENA]
¢þ
>WENV181106467
OEEF01014496
[OEEF] human gut metagenome; human gut
185
111
-
Arg
CCG
[ENA]
¢þ
>WENV181106459
OEEF01010090
[OEEF] human gut metagenome; human gut
191
116
-
Thr
TGT
[ENA]
¢þ
>WENV181106446
OEEF01002652
[OEEF] human gut metagenome; human gut
199
125
-
Gln
CTG
[ENA]
¢þ
>WENV181106451
OEEF01003569
[OEEF] human gut metagenome; human gut
207
282
+
Phe
GAA
[ENA]
¢þ
>WENV181106442
OEEF01002313
[OEEF] human gut metagenome; human gut
216
292
+
Arg
CCG
[ENA]
¢þ
>WENV181106457
OEEF01007018
[OEEF] human gut metagenome; human gut
219
131
-
Ser
GCT
[ENA]
¢þ
>WENV181106448
OEEF01003409
[OEEF] human gut metagenome; human gut
221
295
+
Val
TAC
[ENA]
¢þ
>WENV181106452
OEEF01003876
[OEEF] human gut metagenome; human gut
239
167
-
Glu
CTC
[ENA]
¢þ
>WENV181106441
OEEF01001284
[OEEF] human gut metagenome; human gut
263
339
+
Ile
GAT
[ENA]
¢þ
>WENV181106445
OEEF01002652
[OEEF] human gut metagenome; human gut
310
237
-
Glu
CTC
[ENA]
¢þ
>WENV181106443
OEEF01002544
[OEEF] human gut metagenome; human gut
312
227
-
Leu
TAA
[ENA]
¢þ
>WENV181106437
OEEF01000481
[OEEF] human gut metagenome; human gut
557
641
+
Leu
CAA
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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