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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA gene List
[OEEP] human gut metagenome; human gut
HIT:
38 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV181115695
OEEP01003104
[OEEP] human gut metagenome; human gut
37
109
+
Lys
CTT
[ENA]
¢þ
>WENV181115720
OEEP01014976
[OEEP] human gut metagenome; human gut
37
122
+
Ser
GCT
[ENA]
¢þ
>WENV181115722
OEEP01015265
[OEEP] human gut metagenome; human gut
48
119
+
Trp
CCA
[ENA]
¢þ
>WENV181115705
OEEP01005896
[OEEP] human gut metagenome; human gut
79
154
+
Pro
TGG
[ENA]
¢þ
>WENV181115717
OEEP01011662
[OEEP] human gut metagenome; human gut
84
160
+
Ile
GAT
[ENA]
¢þ
>WENV181115716
OEEP01011050
[OEEP] human gut metagenome; human gut
110
30
-
Leu
TAG
[ENA]
¢þ
>WENV181115723
OEEP01018363
[OEEP] human gut metagenome; human gut
117
42
-
Thr
GGT
[ENA]
¢þ
>WENV181115715
OEEP01011021
[OEEP] human gut metagenome; human gut
123
40
-
Leu
CAG
[ENA]
¢þ
>WENV181115721
OEEP01014976
[OEEP] human gut metagenome; human gut
127
203
+
Arg
ACG
[ENA]
¢þ
>WENV181115708
OEEP01006644
[OEEP] human gut metagenome; human gut
129
204
+
Thr
TGT
[ENA]
¢þ
>WENV181115714
OEEP01010346
[OEEP] human gut metagenome; human gut
135
60
-
Val
TAC
[ENA]
¢þ
>WENV181115703
OEEP01004987
[OEEP] human gut metagenome; human gut
145
221
+
Lys
CTT
[ENA]
¢þ
>WENV181115701
OEEP01004384
[OEEP] human gut metagenome; human gut
146
73
-
Asn
GTT
[ENA]
¢þ
>WENV181115713
OEEP01008356
[OEEP] human gut metagenome; human gut
147
72
-
Asp
GTC
[ENA]
¢þ
>WENV181115698
OEEP01003380
[OEEP] human gut metagenome; human gut
150
67
-
Tyr
GTA
[ENA]
¢þ
>WENV181115710
OEEP01007135
[OEEP] human gut metagenome; human gut
150
77
-
Gly
GCC
[ENA]
¢þ
>WENV181115699
OEEP01003639
[OEEP] human gut metagenome; human gut
158
83
-
Asp
GTC
[ENA]
¢þ
>WENV181115711
OEEP01008268
[OEEP] human gut metagenome; human gut
166
95
-
Gln
TTG
[ENA]
¢þ
>WENV181115692
OEEP01002218
[OEEP] human gut metagenome; human gut
167
241
+
Glu
CTC
[ENA]
¢þ
>WENV181115725
OEEP01019978
[OEEP] human gut metagenome; human gut
170
96
-
Ile
GAT
[ENA]
¢þ
>WENV181115689
OEEP01000838
[OEEP] human gut metagenome; human gut
171
88
-
Leu
CAA
[ENA]
¢þ
>WENV181115706
OEEP01005896
[OEEP] human gut metagenome; human gut
173
243
+
Gly
TCC
[ENA]
¢þ
>WENV181115724
OEEP01019506
[OEEP] human gut metagenome; human gut
177
104
-
Gly
CCC
[ENA]
¢þ
>WENV181115718
OEEP01013128
[OEEP] human gut metagenome; human gut
182
109
-
Phe
GAA
[ENA]
¢þ
>WENV181115719
OEEP01013673
[OEEP] human gut metagenome; human gut
183
108
-
Thr
CGT
[ENA]
¢þ
>WENV181115709
OEEP01006644
[OEEP] human gut metagenome; human gut
208
292
+
Tyr
GTA
[ENA]
¢þ
>WENV181115704
OEEP01004987
[OEEP] human gut metagenome; human gut
227
301
+
Glu
CTC
[ENA]
¢þ
>WENV181115712
OEEP01008274
[OEEP] human gut metagenome; human gut
246
171
-
Thr
CGT
[ENA]
¢þ
>WENV181115697
OEEP01003380
[OEEP] human gut metagenome; human gut
251
179
-
Thr
TGT
[ENA]
¢þ
>WENV181115707
OEEP01005923
[OEEP] human gut metagenome; human gut
259
185
-
Ile2
CAT
[ENA]
¢þ
>WENV181115702
OEEP01004499
[OEEP] human gut metagenome; human gut
308
234
-
Met
CAT
[ENA]
¢þ
>WENV181115693
OEEP01002218
[OEEP] human gut metagenome; human gut
313
389
+
Ile2
CAT
[ENA]
¢þ
>WENV181115700
OEEP01004384
[OEEP] human gut metagenome; human gut
326
255
-
Glu
TTC
[ENA]
¢þ
>WENV181115696
OEEP01003380
[OEEP] human gut metagenome; human gut
367
296
-
Glu
TTC
[ENA]
¢þ
>WENV181115694
OEEP01002218
[OEEP] human gut metagenome; human gut
403
478
+
Trp
CCA
[ENA]
¢þ
>WENV181115691
OEEP01000936
[OEEP] human gut metagenome; human gut
613
538
-
Arg
CCT
[ENA]
¢þ
>WENV181115690
OEEP01000848
[OEEP] human gut metagenome; human gut
771
699
-
Ala
TGC
[ENA]
¢þ
>WENV181115688
OEEP01000028
[OEEP] human gut metagenome; human gut
2128
2199
+
Asn
GTT
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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