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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA gene List
[OEKC] metagenome; 1998
HIT:
41 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV181184417
OEKC01000154
[OEKC] metagenome; 1998
255
181
-
Gln
TTG
[ENA]
¢þ
>WENV181184406
OEKC01000064
[OEKC] metagenome; 1998
466
380
-
Leu
TAA
[ENA]
¢þ
>WENV181184415
OEKC01000131
[OEKC] metagenome; 1998
629
554
-
Trp
CCA
[ENA]
¢þ
>WENV181184433
OEKC01000244
[OEKC] metagenome; 1998
769
843
+
Val
GAC
[ENA]
¢þ
>WENV181184427
OEKC01000212
[OEKC] metagenome; 1998
854
943
+
Ser
TGA
[ENA]
¢þ
>WENV181184422
OEKC01000184
[OEKC] metagenome; 1998
1039
964
-
Thr
TGT
[ENA]
¢þ
>WENV181184401
OEKC01000029
[OEKC] metagenome; 1998
1164
1079
-
Tyr
GTA
[ENA]
¢þ
>WENV181184402
OEKC01000032
[OEKC] metagenome; 1998
1263
1339
+
fMet
CAT
[ENA]
¢þ
>WENV181184400
OEKC01000029
[OEKC] metagenome; 1998
1370
1298
-
Gly
TCC
[ENA]
¢þ
>WENV181184428
OEKC01000222
[OEKC] metagenome; 1998
1680
1755
+
Ala
CGC
[ENA]
¢þ
>WENV181184404
OEKC01000045
[OEKC] metagenome; 1998
1723
1648
-
Glu
TTC
[ENA]
¢þ
>WENV181184420
OEKC01000171
[OEKC] metagenome; 1998
1830
1920
+
Ser
GGA
[ENA]
¢þ
>WENV181184435
OEKC01000249
[OEKC] metagenome; 1998
2305
2229
-
Met
CAT
[ENA]
¢þ
>WENV181184431
OEKC01000227
[OEKC] metagenome; 1998
2354
2430
+
His
GTG
[ENA]
¢þ
>WENV181184403
OEKC01000035
[OEKC] metagenome; 1998
2593
2518
-
Phe
GAA
[ENA]
¢þ
>WENV181184439
OEKC01000252
[OEKC] metagenome; 1998
2601
2677
+
Arg
ACG
[ENA]
¢þ
>WENV181184410
OEKC01000105
[OEKC] metagenome; 1998
3054
3130
+
Pro
CGG
[ENA]
¢þ
>WENV181184413
OEKC01000125
[OEKC] metagenome; 1998
3581
3657
+
Arg
TCT
[ENA]
¢þ
>WENV181184409
OEKC01000085
[OEKC] metagenome; 1998
4837
4762
-
Val
TAC
[ENA]
¢þ
>WENV181184412
OEKC01000115
[OEKC] metagenome; 1998
5079
5155
+
Asp
GTC
[ENA]
¢þ
>WENV181184429
OEKC01000223
[OEKC] metagenome; 1998
5176
5090
-
Leu
GAG
[ENA]
¢þ
>WENV181184430
OEKC01000224
[OEKC] metagenome; 1998
5322
5395
+
Gln
CTG
[ENA]
¢þ
>WENV181184421
OEKC01000171
[OEKC] metagenome; 1998
5610
5702
+
Ser
GCT
[ENA]
¢þ
>WENV181184414
OEKC01000128
[OEKC] metagenome; 1998
6136
6211
+
Glu
CTC
[ENA]
¢þ
>WENV181184423
OEKC01000187
[OEKC] metagenome; 1998
6414
6328
-
Leu
CAG
[ENA]
¢þ
>WENV181184416
OEKC01000152
[OEKC] metagenome; 1998
6420
6344
-
Pro
GGG
[ENA]
¢þ
>WENV181184405
OEKC01000055
[OEKC] metagenome; 1998
6430
6355
-
Lys
CTT
[ENA]
¢þ
>WENV181184432
OEKC01000235
[OEKC] metagenome; 1998
7605
7689
+
Leu
TAG
[ENA]
¢þ
>WENV181184426
OEKC01000211
[OEKC] metagenome; 1998
8169
8080
-
Ser
CGA
[ENA]
¢þ
>WENV181184408
OEKC01000071
[OEKC] metagenome; 1998
8961
8886
-
Lys
TTT
[ENA]
¢þ
>WENV181184424
OEKC01000188
[OEKC] metagenome; 1998
11050
10975
-
Ala
GGC
[ENA]
¢þ
>WENV181184407
OEKC01000065
[OEKC] metagenome; 1998
11176
11250
+
Val
CAC
[ENA]
¢þ
>WENV181184418
OEKC01000168
[OEKC] metagenome; 1998
11820
11905
+
Leu
CAA
[ENA]
¢þ
>WENV181184411
OEKC01000105
[OEKC] metagenome; 1998
14055
13981
-
Thr
GGT
[ENA]
¢þ
>WENV181184440
OEKC01000256
[OEKC] metagenome; 1998
14170
14245
+
Thr
CGT
[ENA]
¢þ
>WENV181184419
OEKC01000170
[OEKC] metagenome; 1998
14293
14219
-
Gly
GCC
[ENA]
¢þ
>WENV181184438
OEKC01000251
[OEKC] metagenome; 1998
17888
17961
+
Gly
CCC
[ENA]
¢þ
>WENV181184434
OEKC01000249
[OEKC] metagenome; 1998
18337
18411
+
Asn
GTT
[ENA]
¢þ
>WENV181184437
OEKC01000250
[OEKC] metagenome; 1998
26706
26630
-
Pro
TGG
[ENA]
¢þ
>WENV181184436
OEKC01000250
[OEKC] metagenome; 1998
26818
26744
-
Ile2
CAT
[ENA]
¢þ
>WENV181184425
OEKC01000199
[OEKC] metagenome; 1998
28191
28118
-
Cys
GCA
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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