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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA gene List
[OEKF] metagenome; 1998
HIT:
27 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV181184476
OEKF01000026
[OEKF] metagenome; 1998
293
367
+
Thr
TGT
[ENA]
¢þ
>WENV181184477
OEKF01000026
[OEKF] metagenome; 1998
430
514
+
Tyr
GTA
[ENA]
¢þ
>WENV181184478
OEKF01000026
[OEKF] metagenome; 1998
615
690
+
Thr
GGT
[ENA]
¢þ
>WENV181184498
OEKF01000298
[OEKF] metagenome; 1998
666
752
+
Leu
CAA
[ENA]
¢þ
>WENV181184484
OEKF01000113
[OEKF] metagenome; 1998
717
642
-
His
GTG
[ENA]
¢þ
>WENV181184494
OEKF01000194
[OEKF] metagenome; 1998
1602
1677
+
Arg
CCG
[ENA]
¢þ
>WENV181184488
OEKF01000175
[OEKF] metagenome; 1998
1676
1600
-
Val
CAC
[ENA]
¢þ
>WENV181184500
OEKF01000299
[OEKF] metagenome; 1998
2136
2053
-
Leu
TAG
[ENA]
¢þ
>WENV181184486
OEKF01000126
[OEKF] metagenome; 1998
2466
2541
+
Arg
TCG
[ENA]
¢þ
>WENV181184485
OEKF01000115
[OEKF] metagenome; 1998
2586
2511
-
Gly
CCC
[ENA]
¢þ
>WENV181184481
OEKF01000056
[OEKF] metagenome; 1998
2779
2703
-
Glu
TTC
[ENA]
¢þ
>WENV181184482
OEKF01000059
[OEKF] metagenome; 1998
2962
2886
-
Asp
GTC
[ENA]
¢þ
>WENV181184483
OEKF01000066
[OEKF] metagenome; 1998
2974
2898
-
Pro
CGG
[ENA]
¢þ
>WENV181184479
OEKF01000026
[OEKF] metagenome; 1998
3468
3543
+
Trp
CCA
[ENA]
¢þ
>WENV181184475
OEKF01000014
[OEKF] metagenome; 1998
3890
3815
-
Ile2
CAT
[ENA]
¢þ
>WENV181184499
OEKF01000299
[OEKF] metagenome; 1998
4179
4253
+
Lys
CTT
[ENA]
¢þ
>WENV181184495
OEKF01000205
[OEKF] metagenome; 1998
4180
4106
-
fMet
CAT
[ENA]
¢þ
>WENV181184480
OEKF01000049
[OEKF] metagenome; 1998
4502
4577
+
Ala
GGC
[ENA]
¢þ
>WENV181184497
OEKF01000290
[OEKF] metagenome; 1998
6100
6025
-
Arg
CCT
[ENA]
¢þ
>WENV181184496
OEKF01000236
[OEKF] metagenome; 1998
7169
7095
-
Gln
CTG
[ENA]
¢þ
>WENV181184493
OEKF01000184
[OEKF] metagenome; 1998
8355
8268
-
Ser
GGA
[ENA]
¢þ
>WENV181184492
OEKF01000184
[OEKF] metagenome; 1998
8456
8370
-
Ser
CGA
[ENA]
¢þ
>WENV181184487
OEKF01000155
[OEKF] metagenome; 1998
9436
9510
+
Thr
CGT
[ENA]
¢þ
>WENV181184501
OEKF01000315
[OEKF] metagenome; 1998
10659
10574
-
Leu
TAA
[ENA]
¢þ
>WENV181184491
OEKF01000184
[OEKF] metagenome; 1998
16225
16150
-
Arg
GCG
[ENA]
¢þ
>WENV181184490
OEKF01000184
[OEKF] metagenome; 1998
16331
16240
-
Ser
GCT
[ENA]
¢þ
>WENV181184489
OEKF01000184
[OEKF] metagenome; 1998
18830
18743
-
Ser
TGA
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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