This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA gene List
[OEKO] metagenome; 1998
HIT:
32 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV181184696
OEKO01000295
[OEKO] metagenome; 1998
26
109
+
Tyr
GTA
[ENA]
¢þ
>WENV181184694
OEKO01000244
[OEKO] metagenome; 1998
75
2
-
Ala
GGC
[ENA]
¢þ
>WENV181184682
OEKO01000002
[OEKO] metagenome; 1998
464
390
-
Thr
TGT
[ENA]
¢þ
>WENV181184697
OEKO01000298
[OEKO] metagenome; 1998
477
551
+
Pro
CGG
[ENA]
¢þ
>WENV181184698
OEKO01000300
[OEKO] metagenome; 1998
527
453
-
fMet
CAT
[ENA]
¢þ
>WENV181184683
OEKO01000004
[OEKO] metagenome; 1998
528
620
+
Ser
CGA
[ENA]
¢þ
>WENV181184706
OEKO01000373
[OEKO] metagenome; 1998
573
502
-
Gln
TTG
[ENA]
¢þ
>WENV181184708
OEKO01000416
[OEKO] metagenome; 1998
616
690
+
His
GTG
[ENA]
¢þ
>WENV181184684
OEKO01000038
[OEKO] metagenome; 1998
851
764
-
Leu
TAA
[ENA]
¢þ
>WENV181184690
OEKO01000119
[OEKO] metagenome; 1998
872
801
-
Gly
CCC
[ENA]
¢þ
>WENV181184687
OEKO01000068
[OEKO] metagenome; 1998
884
958
+
Gly
GCC
[ENA]
¢þ
>WENV181184703
OEKO01000338
[OEKO] metagenome; 1998
1761
1688
-
Arg
TCT
[ENA]
¢þ
>WENV181184693
OEKO01000236
[OEKO] metagenome; 1998
1860
1934
+
Ala
CGC
[ENA]
¢þ
>WENV181184709
OEKO01000456
[OEKO] metagenome; 1998
1945
2033
+
Ser
GGA
[ENA]
¢þ
>WENV181184686
OEKO01000058
[OEKO] metagenome; 1998
1979
1905
-
Val
TAC
[ENA]
¢þ
>WENV181184689
OEKO01000115
[OEKO] metagenome; 1998
2049
1962
-
Ser
TGA
[ENA]
¢þ
>WENV181184691
OEKO01000186
[OEKO] metagenome; 1998
2421
2494
+
Thr
GGT
[ENA]
¢þ
>WENV181184692
OEKO01000190
[OEKO] metagenome; 1998
2453
2537
+
Leu
CAG
[ENA]
¢þ
>WENV181184688
OEKO01000113
[OEKO] metagenome; 1998
2812
2741
-
Gln
CTG
[ENA]
¢þ
>WENV181184702
OEKO01000338
[OEKO] metagenome; 1998
2865
2793
-
Gly
TCC
[ENA]
¢þ
>WENV181184711
OEKO01000464
[OEKO] metagenome; 1998
3086
3012
-
Ile2
CAT
[ENA]
¢þ
>WENV181184705
OEKO01000347
[OEKO] metagenome; 1998
3233
3318
+
Leu
CAA
[ENA]
¢þ
>WENV181184704
OEKO01000344
[OEKO] metagenome; 1998
3741
3648
-
SeC
TCA
[ENA]
¢þ
>WENV181184685
OEKO01000046
[OEKO] metagenome; 1998
4338
4263
-
Pro
GGG
[ENA]
¢þ
>WENV181184701
OEKO01000338
[OEKO] metagenome; 1998
5183
5258
+
Pro
TGG
[ENA]
¢þ
>WENV181184712
OEKO01000470
[OEKO] metagenome; 1998
5603
5530
-
Arg
CCT
[ENA]
¢þ
>WENV181184700
OEKO01000327
[OEKO] metagenome; 1998
7318
7244
-
Arg
ACG
[ENA]
¢þ
>WENV181184707
OEKO01000404
[OEKO] metagenome; 1998
7368
7443
+
Lys
TTT
[ENA]
¢þ
>WENV181184699
OEKO01000327
[OEKO] metagenome; 1998
7450
7361
-
Ser
GCT
[ENA]
¢þ
>WENV181184710
OEKO01000457
[OEKO] metagenome; 1998
8265
8339
+
Val
CAC
[ENA]
¢þ
>WENV181184695
OEKO01000286
[OEKO] metagenome; 1998
11152
11080
-
Arg
CCG
[ENA]
¢þ
>WENV181184713
OEKO01000566
[OEKO] metagenome; 1998
17653
17740
+
Leu
GAG
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
BACK