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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA gene List
[OEKR] metagenome; 1998
HIT:
22 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV181184784
OEKR01000261
[OEKR] metagenome; 1998
329
400
+
Gly
TCC
[ENA]
¢þ
>WENV181184797
OEKR01000629
[OEKR] metagenome; 1998
712
798
+
Leu
CAG
[ENA]
¢þ
>WENV181184780
OEKR01000141
[OEKR] metagenome; 1998
981
1055
+
fMet
CAT
[ENA]
¢þ
>WENV181184779
OEKR01000057
[OEKR] metagenome; 1998
1131
1056
-
Pro
GGG
[ENA]
¢þ
>WENV181184785
OEKR01000261
[OEKR] metagenome; 1998
1374
1447
+
Arg
TCT
[ENA]
¢þ
>WENV181184778
OEKR01000042
[OEKR] metagenome; 1998
1763
1837
+
Pro
CGG
[ENA]
¢þ
>WENV181184788
OEKR01000303
[OEKR] metagenome; 1998
1874
1800
-
Ala
TGC
[ENA]
¢þ
>WENV181184793
OEKR01000481
[OEKR] metagenome; 1998
1937
2010
+
Thr
GGT
[ENA]
¢þ
>WENV181184781
OEKR01000167
[OEKR] metagenome; 1998
2077
1989
-
Ser
GGA
[ENA]
¢þ
>WENV181184786
OEKR01000262
[OEKR] metagenome; 1998
2124
2052
-
Arg
CCG
[ENA]
¢þ
>WENV181184796
OEKR01000576
[OEKR] metagenome; 1998
2622
2704
+
Leu
TAG
[ENA]
¢þ
>WENV181184798
OEKR01000641
[OEKR] metagenome; 1998
2819
2734
-
Leu
CAA
[ENA]
¢þ
>WENV181184791
OEKR01000452
[OEKR] metagenome; 1998
2854
2925
+
Gln
CTG
[ENA]
¢þ
>WENV181184782
OEKR01000173
[OEKR] metagenome; 1998
3461
3535
+
Val
CAC
[ENA]
¢þ
>WENV181184794
OEKR01000497
[OEKR] metagenome; 1998
4163
4091
-
Gln
TTG
[ENA]
¢þ
>WENV181184783
OEKR01000258
[OEKR] metagenome; 1998
4232
4303
+
Gly
CCC
[ENA]
¢þ
>WENV181184795
OEKR01000530
[OEKR] metagenome; 1998
4409
4334
-
Pro
TGG
[ENA]
¢þ
>WENV181184777
OEKR01000018
[OEKR] metagenome; 1998
5906
5817
-
Ser
TGA
[ENA]
¢þ
>WENV181184787
OEKR01000301
[OEKR] metagenome; 1998
7409
7316
-
SeC
TCA
[ENA]
¢þ
>WENV181184792
OEKR01000472
[OEKR] metagenome; 1998
8764
8837
+
Val
TAC
[ENA]
¢þ
>WENV181184789
OEKR01000426
[OEKR] metagenome; 1998
9652
9741
+
Ser
GCT
[ENA]
¢þ
>WENV181184790
OEKR01000426
[OEKR] metagenome; 1998
9814
9888
+
Arg
ACG
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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